FFCP PHASE1:Hg19::chr1:176432298..176432319,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=60676|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14615|TSSclassifier=S|UniProt=Q9BXP8,A9Z1Y8|association_with_transcript=0bp_to_ENST00000367661,ENST00000367662,NM_020318,NM_021936,uc001gky.1,uc001gkz.2,uc009www.2_5end|coexpression_cluster_id=C50|description=CAGE_peak_1_at_PAPPA2_5end|id=chr1:176432298..176432319,+|ontology_enrichment_celltype=CL:0002541!1.12e-27!3;CL:0002537!2.46e-16!5|ontology_enrichment_celltype_v019=CL:0002541;6.47e-47;3!CL:0000349;2.96e-20;19!CL:0002537;3.88e-13;5|ontology_enrichment_celltype_v019_2=CL:0002541,6.47e-47,3;CL:0000349,2.96e-20,19;CL:0002537,3.88e-13,5|ontology_enrichment_development_v019=UBERON:0003124;5.53e-17;1!UBERON:0003918;5.11e-07;10!UBERON:0007687;5.11e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!2.20e-30!14;UBERON:0000158!2.20e-30!14;UBERON:0000476!1.12e-27!3;UBERON:0000920!1.12e-27!3;UBERON:0003124!6.55e-21!7;UBERON:0000478!1.94e-17!24;UBERON:0003978!2.67e-12!3;UBERON:0009751!2.67e-12!3;UBERON:0000946!2.67e-12!3;UBERON:0002523!2.67e-12!3;UBERON:0005983!2.67e-12!3;UBERON:0002165!2.67e-12!3;UBERON:0002062!2.67e-12!3;UBERON:0007280!2.67e-12!3;UBERON:0000305!7.84e-12!7;UBERON:0004923!3.22e-11!57;UBERON:0004871!2.03e-10!8;UBERON:0002134!6.33e-10!1;UBERON:0005208!6.33e-10!1;UBERON:0005946!6.33e-10!1;UBERON:0005965!6.33e-10!1;UBERON:0002078!6.33e-10!1;UBERON:0007190!8.24e-10!1;UBERON:0002146!8.99e-10!1;UBERON:0005623!8.99e-10!1|ontology_enrichment_uberon_v019=UBERON:0003124;6.47e-47;3!UBERON:0000920;6.47e-47;3!UBERON:0005631;2.56e-38;10!UBERON:0000158;2.56e-38;10!UBERON:0000478;7.05e-23;24!UBERON:0000305;1.18e-09;7|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.47e-47,3;UBERON:0005631,2.94e-39,14;UBERON:0000158,2.94e-39,14;UBERON:0003124,1.06e-35,7;UBERON:0000478,7.05e-23,24;UBERON:0000305,1.18e-09,7;UBERON:0004871,1.47e-08,8;UBERON:0004923,3.52e-08,66|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78669021968937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94702919869853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1199.19129355619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1154.01470992176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,331.616089300651,3.56357616999166,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1466.76733244737,175.775781738174,3070.81334464335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3999119452314,23.8668376014241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.08700438042865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0,0,0,0,0,0,0,0,0,0,0,2529.88029940862,0,0,0.40781839786099,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@PAPPA2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=60676 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14615 | |||
|TSSclassifier=S | |||
|UniProt=Q9BXP8,A9Z1Y8 | |||
|association_with_transcript=0bp_to_ENST00000367661,ENST00000367662,NM_020318,NM_021936,uc001gky.1,uc001gkz.2,uc009www.2_5end | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_1_at_PAPPA2_5end | |||
|id=chr1:176432298..176432319,+ | |||
|ontology_enrichment_celltype=CL:0002541!1.12e-27!3;CL:0002537!2.46e-16!5 | |||
|ontology_enrichment_celltype_v019=CL:0002541;6.47e-47;3!CL:0000349;2.96e-20;19!CL:0002537;3.88e-13;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.47e-47,3;CL:0000349,2.96e-20,19;CL:0002537,3.88e-13,5 | |||
|ontology_enrichment_development_v019=UBERON:0003124;5.53e-17;1!UBERON:0003918;5.11e-07;10!UBERON:0007687;5.11e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.20e-30!14;UBERON:0000158!2.20e-30!14;UBERON:0000476!1.12e-27!3;UBERON:0000920!1.12e-27!3;UBERON:0003124!6.55e-21!7;UBERON:0000478!1.94e-17!24;UBERON:0003978!2.67e-12!3;UBERON:0009751!2.67e-12!3;UBERON:0000946!2.67e-12!3;UBERON:0002523!2.67e-12!3;UBERON:0005983!2.67e-12!3;UBERON:0002165!2.67e-12!3;UBERON:0002062!2.67e-12!3;UBERON:0007280!2.67e-12!3;UBERON:0000305!7.84e-12!7;UBERON:0004923!3.22e-11!57;UBERON:0004871!2.03e-10!8;UBERON:0002134!6.33e-10!1;UBERON:0005208!6.33e-10!1;UBERON:0005946!6.33e-10!1;UBERON:0005965!6.33e-10!1;UBERON:0002078!6.33e-10!1;UBERON:0007190!8.24e-10!1;UBERON:0002146!8.99e-10!1;UBERON:0005623!8.99e-10!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;6.47e-47;3!UBERON:0000920;6.47e-47;3!UBERON:0005631;2.56e-38;10!UBERON:0000158;2.56e-38;10!UBERON:0000478;7.05e-23;24!UBERON:0000305;1.18e-09;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.47e-47,3;UBERON:0005631,2.94e-39,14;UBERON:0000158,2.94e-39,14;UBERON:0003124,1.06e-35,7;UBERON:0000478,7.05e-23,24;UBERON:0000305,1.18e-09,7;UBERON:0004871,1.47e-08,8;UBERON:0004923,3.52e-08,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78669021968937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94702919869853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1199.19129355619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1154.01470992176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,331.616089300651,3.56357616999166,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1466.76733244737,175.775781738174,3070.81334464335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3999119452314,23.8668376014241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.08700438042865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0,0,0,0,0,0,0,0,0,0,0,2529.88029940862,0,0,0.40781839786099,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@PAPPA2 | |||
}} |
Revision as of 01:57, 12 September 2013
Short description: | p1@PAPPA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PAPPA2_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000367661, ENST00000367662, NM_020318, NM_021936, uc001gky.1, uc001gkz.2, uc009www.2_5end |
EntrezGene: | PAPPA2 |
HGNC: | 14615 |
UniProt: | Q9BXP8A9Z1Y8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.47e-47 | 3 |
extraembryonic cell | 2.96e-20 | 19 |
amnion mesenchymal stem cell | 3.88e-13 | 5 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.47e-47 | 3 |
extraembryonic membrane | 2.94e-39 | 14 |
membranous layer | 2.94e-39 | 14 |
chorion | 1.06e-35 | 7 |
extraembryonic structure | 7.05e-23 | 24 |
amnion | 1.18e-09 | 7 |
somatic layer of lateral plate mesoderm | 1.47e-08 | 8 |
organ component layer | 3.52e-08 | 66 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.