FFCP PHASE1:Hg19::chr10:6622345..6622400,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=439949|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000445427,ENST00000455810,NR_036502,NR_036503_5end|coexpression_cluster_id=C18|description=CAGE_peak_1_at_LOC439949_5end|id=chr10:6622345..6622400,+|ontology_enrichment_celltype=CL:0000084!7.41e-13!25;CL:0000827!7.41e-13!25;CL:0000791!4.04e-12!18;CL:0000789!4.04e-12!18;CL:0002420!4.04e-12!18;CL:0002419!4.04e-12!18;CL:0000790!4.04e-12!18;CL:0000542!4.01e-08!53;CL:0000051!4.01e-08!53;CL:0000625!4.13e-08!11;CL:0000838!4.20e-08!52|ontology_enrichment_celltype_v019=CL:0000791;3.73e-14;18!CL:0000789;3.73e-14;18!CL:0002419;3.73e-14;18!CL:0000084;4.97e-14;25!CL:0000625;2.21e-09;11|ontology_enrichment_celltype_v019_2=CL:0000791,2.91e-14,18;CL:0000789,2.91e-14,18;CL:0002420,2.91e-14,18;CL:0002419,2.91e-14,18;CL:0000790,2.91e-14,18;CL:0000084,3.03e-14,25;CL:0000827,3.03e-14,25;CL:0000542,2.30e-10,53;CL:0000051,2.30e-10,53;CL:0000838,2.39e-10,52;CL:0000625,1.93e-09,11;CL:0000988,8.92e-07,177|ontology_enrichment_development_v019=CL:0000790;3.73e-14;18|ontology_enrichment_disease=DOID:2531!1.09e-15!51;DOID:0060083!1.09e-15!51;DOID:1240!1.87e-15!39;DOID:8692!7.01e-14!31|ontology_enrichment_disease_v019=DOID:8692;2.28e-16;31!DOID:1240;3.32e-14;39!DOID:2531;3.06e-11;51!DOID:0060083;3.06e-11;51!DOID:1036;7.28e-07;8|ontology_enrichment_disease_v019_2=DOID:2531,7.35e-18,51;DOID:0060083,7.35e-18,51;DOID:1240,9.13e-18,39;DOID:8692,1.04e-16,31;DOID:1036,8.12e-07,8|ontology_enrichment_uberon=UBERON:0000178!2.12e-08!15;UBERON:0000179!2.12e-08!15;UBERON:0000463!2.12e-08!15|ontology_enrichment_uberon_v019=UBERON:0000178;8.52e-10;15!UBERON:0000179;8.52e-10;15!UBERON:0000463;8.52e-10;15!UBERON:0006554;3.62e-07;30!UBERON:0001008;3.62e-07;30!UBERON:0002390;5.12e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.64e-10,15;UBERON:0000179,8.64e-10,15;UBERON:0000463,8.64e-10,15|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,1.96587149201207,0.697801167972428,3.05817920982241,3.16520373874144,0.247532705920093,0,0,0,0,0,0.861847406537515,2.04000691244253,2.82109249330279,3.14859585844162,2.32686522623903,1.63205431473244,2.90370941842215,3.03772180964799,2.91229890860613,0.393364276848904,1.91914699048606,1.08371286321253,4.59710612239464,4.819294700452,2.9580320813343,3.02122082263176,1.56386155736164,9.68881449804996,0,1.20326668482085,1.95309783644267,0.223915474239924,0.971680998056939,1.03030227053675,0,0,0,0.464858073811369,1.23350366406548,0,0.575384784644301,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0.545812300115692,0,0,0,0,0.329851300186716,0.398927315243264,0,0.870627715885752,0,0,0,0,0.65156653411535,0.605399502633369,0,0,0.422510572623884,0,0.419317291016752,0.786300418025466,0.450530678524519,0.64290234678832,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,6.60856642895129,2.80254281490768,11.0621315605532,6.68813218387032,6.6811829667358,6.99045096598331,21.0654984192254,21.1849473311834,21.7785990637977,25.3274746930285,14.9290012226133,18.8547780783896,13.5135675696009,19.4978781910811,14.986684407904,15.0868843169459,10.5240258946353,14.64655094265,11.8819265151372,16.4598085109887,21.403266247177,21.9524599990451,12.9172650675225,16.0952607312807,16.1504899376836,13.1570239850141,18.1582286164735,20.183587069549,14.2567806667256,16.7138382176328,15.7423531719935,11.2437653897111,16.3376303910372,16.4225599384209,5.84659555351724,2.94184215361858,6.08262496307756,0,1.34140171940727,0.639312809217652,0,0,0.144846518960824,0,0,1.13441780596881,0.665188192387692,0.702678285545008,0.982343066232845,6.55731518926576,2.96627554227544,0.324547393654683,0.174129737299267,0.132957960518865,0,1.14398982156026,0,0.993812036833525,0,2.77712401286075,0,1.25849830862972,1.10047216776027,0.626984899610432,0.516833518338658,0,0.33472061276467,2.01414658554573,0,1.22031028774085,1.10298924103761,0.81014194788176,1.69669483739752,2.46982309888787,1.35133776579987,1.53316637465883,0,2.5648244150257,0,0,2.18047026071267,0,0,0,0,0,0,0,0.24666754841716,1.24484414159907,1.0776853765575,0.490385709340376,0.605429710579726,0,1.87457145467037,0.312160076830321,0,0.149448680551801,1.05691048779388,2.26622122115384,0.842704840213491,0,1.47401180774122,0.516628905878827,0,0,0,0,1.34668891163253,0.750711119231785,0,0,0,0,0.680593098960126,0,0.427114777637135,0,0.300091096084402,0,0,0,0,0,0,0.0920498986422993,0.323292113637624,0,0,0.67824236924195,3.86521706326594,3.00020732649918,2.58124135850103,3.53723747775827,3.44577397635862,3.137236457477,1.86589899027667,2.77552935963191,2.91981887260664,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,1.40241773803446,0.4115740113314,1.47008711385542,1.26755034821831,0.982827216677626,0,14.1268191812688,1.8448265781467,0.343135620597051,2.85350742062426,5.62008766288098,2.81481122752566,4.16648003213383,1.62904152655162,2.07986957055916,0,1.15930404975077,0.234817388471643,1.01056513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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=439949 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000445427,ENST00000455810,NR_036502,NR_036503_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_LOC439949_5end | |||
|id=chr10:6622345..6622400,+ | |||
|ontology_enrichment_celltype=CL:0000084!7.41e-13!25;CL:0000827!7.41e-13!25;CL:0000791!4.04e-12!18;CL:0000789!4.04e-12!18;CL:0002420!4.04e-12!18;CL:0002419!4.04e-12!18;CL:0000790!4.04e-12!18;CL:0000542!4.01e-08!53;CL:0000051!4.01e-08!53;CL:0000625!4.13e-08!11;CL:0000838!4.20e-08!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.73e-14;18!CL:0000789;3.73e-14;18!CL:0002419;3.73e-14;18!CL:0000084;4.97e-14;25!CL:0000625;2.21e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.91e-14,18;CL:0000789,2.91e-14,18;CL:0002420,2.91e-14,18;CL:0002419,2.91e-14,18;CL:0000790,2.91e-14,18;CL:0000084,3.03e-14,25;CL:0000827,3.03e-14,25;CL:0000542,2.30e-10,53;CL:0000051,2.30e-10,53;CL:0000838,2.39e-10,52;CL:0000625,1.93e-09,11;CL:0000988,8.92e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;3.73e-14;18 | |||
|ontology_enrichment_disease=DOID:2531!1.09e-15!51;DOID:0060083!1.09e-15!51;DOID:1240!1.87e-15!39;DOID:8692!7.01e-14!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.28e-16;31!DOID:1240;3.32e-14;39!DOID:2531;3.06e-11;51!DOID:0060083;3.06e-11;51!DOID:1036;7.28e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,7.35e-18,51;DOID:0060083,7.35e-18,51;DOID:1240,9.13e-18,39;DOID:8692,1.04e-16,31;DOID:1036,8.12e-07,8 | |||
|ontology_enrichment_uberon=UBERON:0000178!2.12e-08!15;UBERON:0000179!2.12e-08!15;UBERON:0000463!2.12e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.52e-10;15!UBERON:0000179;8.52e-10;15!UBERON:0000463;8.52e-10;15!UBERON:0006554;3.62e-07;30!UBERON:0001008;3.62e-07;30!UBERON:0002390;5.12e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.64e-10,15;UBERON:0000179,8.64e-10,15;UBERON:0000463,8.64e-10,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,1.96587149201207,0.697801167972428,3.05817920982241,3.16520373874144,0.247532705920093,0,0,0,0,0,0.861847406537515,2.04000691244253,2.82109249330279,3.14859585844162,2.32686522623903,1.63205431473244,2.90370941842215,3.03772180964799,2.91229890860613,0.393364276848904,1.91914699048606,1.08371286321253,4.59710612239464,4.819294700452,2.9580320813343,3.02122082263176,1.56386155736164,9.68881449804996,0,1.20326668482085,1.95309783644267,0.223915474239924,0.971680998056939,1.03030227053675,0,0,0,0.464858073811369,1.23350366406548,0,0.575384784644301,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0.545812300115692,0,0,0,0,0.329851300186716,0.398927315243264,0,0.870627715885752,0,0,0,0,0.65156653411535,0.605399502633369,0,0,0.422510572623884,0,0.419317291016752,0.786300418025466,0.450530678524519,0.64290234678832,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,6.60856642895129,2.80254281490768,11.0621315605532,6.68813218387032,6.6811829667358,6.99045096598331,21.0654984192254,21.1849473311834,21.7785990637977,25.3274746930285,14.9290012226133,18.8547780783896,13.5135675696009,19.4978781910811,14.986684407904,15.0868843169459,10.5240258946353,14.64655094265,11.8819265151372,16.4598085109887,21.403266247177,21.9524599990451,12.9172650675225,16.0952607312807,16.1504899376836,13.1570239850141,18.1582286164735,20.183587069549,14.2567806667256,16.7138382176328,15.7423531719935,11.2437653897111,16.3376303910372,16.4225599384209,5.84659555351724,2.94184215361858,6.08262496307756,0,1.34140171940727,0.639312809217652,0,0,0.144846518960824,0,0,1.13441780596881,0.665188192387692,0.702678285545008,0.982343066232845,6.55731518926576,2.96627554227544,0.324547393654683,0.174129737299267,0.132957960518865,0,1.14398982156026,0,0.993812036833525,0,2.77712401286075,0,1.25849830862972,1.10047216776027,0.626984899610432,0.516833518338658,0,0.33472061276467,2.01414658554573,0,1.22031028774085,1.10298924103761,0.81014194788176,1.69669483739752,2.46982309888787,1.35133776579987,1.53316637465883,0,2.5648244150257,0,0,2.18047026071267,0,0,0,0,0,0,0,0.24666754841716,1.24484414159907,1.0776853765575,0.490385709340376,0.605429710579726,0,1.87457145467037,0.312160076830321,0,0.149448680551801,1.05691048779388,2.26622122115384,0.842704840213491,0,1.47401180774122,0.516628905878827,0,0,0,0,1.34668891163253,0.750711119231785,0,0,0,0,0.680593098960126,0,0.427114777637135,0,0.300091096084402,0,0,0,0,0,0,0.0920498986422993,0.323292113637624,0,0,0.67824236924195,3.86521706326594,3.00020732649918,2.58124135850103,3.53723747775827,3.44577397635862,3.137236457477,1.86589899027667,2.77552935963191,2.91981887260664,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,1.40241773803446,0.4115740113314,1.47008711385542,1.26755034821831,0.982827216677626,0,14.1268191812688,1.8448265781467,0.343135620597051,2.85350742062426,5.62008766288098,2.81481122752566,4.16648003213383,1.62904152655162,2.07986957055916,0,1.15930404975077,0.234817388471643,1.01056513432752,0.462985512576611,0.761016608938393,0,0,0,0,0.148631162288728,5.62403003920662,3.69560682037491,2.97727704209012,1.79117045405697,3.48760726216754,7.28427090413901,0.492663237895943,3.34584049250259,0.414656231081544,0,0,0,0,0,0,0.411309970813294,0,0,0,1.30788020649984,0.22001485746285,0.775630294546667,0,0,0.26593811658487,0,1.80045161983499,0,1.0656887160644,0.285955987316295,0.542621605391443,0.823240336780769,0.325736184293735,0.355391948742546,0.791951872933429,0,0,0.199945982364114,1.2162378064119,0.502257091432126,2.10833939483032,0,0,0,0,0,0.179060963239896,3.47463946379935,6.89607660706745,4.74380664690938,6.03212270514817,1.01637849688985,1.30139853857622,2.31986643833309,0.670065061337395,2.55175500661265,0,0,0,0.36807447515742,0.500170521059677,0.813795071099207,0.207970861530807,0.535286966391485,0.473107245101804,0.117141414992713,0,0,0,1.32845119707087,0.184369168541703,0.695068915744663,0.587403472388222,0.343143423810856,4.75566460082641,3.23571301227925,5.76328812138599,0.909382714338778,1.66435439510497,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,2.29632954224082,2.6065841139427,4.60404944679482,0.34444334449382,0,0.131124414959424,4.51199612907412,1.46329140498388,1.56869953835371,4.38417673959782,2.11103257785751,1.13733384070897,1.70093705276516,1.0795795805107,7.71136263451447,1.08378575017541,2.50844886927427,3.05851527654046,3.3243040357149,3.1342465661105,4.82371728621056,3.66009631434861,2.56450125116389,2.29610251989794,3.90454073597164,0.515205058238611,0.0915694648183434,0.082509499920588,5.74265537996172,1.95018073810956,0,1.54673149267395,0.154048617114644,0,0.689182862422653,0.751941714077915,0.145016693914229,0.767039646744908,0.356128142586949,3.14041339185858,1.34533047155574,3.95599408733211,3.2370489873776,0,0,0,3.38836938193698,0,0,0.37064843820784,0.143124886741991,0.744316738719335,0,0.571890581771475,0.767693373934002,0,0,0,1.07923474549989,0,0.471249609382746,0,0,0,1.4629012172687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| |||
|short_description=p1@LOC439949 | |||
}} |
Revision as of 14:00, 10 September 2013
Short description: | p1@LOC439949 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC439949_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000445427, ENST00000455810, NR_036502, NR_036503_5end |
EntrezGene: | LOC439949 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.91e-14 | 18 |
alpha-beta T cell | 2.91e-14 | 18 |
immature T cell | 2.91e-14 | 18 |
mature T cell | 2.91e-14 | 18 |
immature alpha-beta T cell | 2.91e-14 | 18 |
T cell | 3.03e-14 | 25 |
pro-T cell | 3.03e-14 | 25 |
lymphocyte | 2.30e-10 | 53 |
common lymphoid progenitor | 2.30e-10 | 53 |
lymphoid lineage restricted progenitor cell | 2.39e-10 | 52 |
CD8-positive, alpha-beta T cell | 1.93e-09 | 11 |
hematopoietic cell | 8.92e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 8.64e-10 | 15 |
haemolymphatic fluid | 8.64e-10 | 15 |
organism substance | 8.64e-10 | 15 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 7.35e-18 | 51 |
immune system cancer | 7.35e-18 | 51 |
leukemia | 9.13e-18 | 39 |
myeloid leukemia | 1.04e-16 | 31 |
chronic leukemia | 8.12e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.