FFCP PHASE1:Hg19::chr10:50818275..50818286,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6572|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10936|TSSclassifier=S|UniProt=Q16572|association_with_transcript=-60bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end|coexpression_cluster_id=C1313|description=CAGE_peak_6_at_SLC18A3_5end|id=chr10:50818275..50818286,+|ontology_enrichment_celltype=CL:0000349!3.55e-21!3;CL:0002577!3.55e-21!3;CL:0002537!1.06e-12!5|ontology_enrichment_celltype_v019=CL:0002577;9.22e-39;3!CL:0000349;2.68e-24;19!CL:0002537;1.81e-23;5|ontology_enrichment_celltype_v019_2=CL:0002577,8.37e-39,3;CL:0000349,2.77e-24,19;CL:0002537,2.02e-23,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:171!2.16e-16!10;DOID:169!2.58e-10!6;DOID:2513!9.10e-08!1;DOID:3095!2.50e-07!22;DOID:2994!2.50e-07!22|ontology_enrichment_disease_v019=DOID:171;3.07e-12;10|ontology_enrichment_disease_v019_2=DOID:171,2.98e-12,10|ontology_enrichment_uberon=UBERON:0005631!8.53e-23!14;UBERON:0000158!8.53e-23!14;UBERON:0001987!5.04e-16!4;UBERON:0004340!5.04e-16!4;UBERON:0003124!9.95e-16!7;UBERON:0002148!5.10e-14!2;UBERON:0009662!5.10e-14!2;UBERON:0002298!4.69e-13!8;UBERON:0000478!6.12e-13!24;UBERON:0000013!2.82e-12!5;UBERON:0002410!2.82e-12!5;UBERON:0002308!1.17e-11!9;UBERON:0000125!1.17e-11!9;UBERON:0000988!1.21e-09!3;UBERON:0006331!1.21e-09!3;UBERON:0005383!1.86e-09!3;UBERON:0005382!1.86e-09!3;UBERON:0001896!2.12e-09!3;UBERON:0005290!2.12e-09!3;UBERON:0010096!2.12e-09!3;UBERON:0000305!3.30e-09!7;UBERON:0004733!9.45e-09!12;UBERON:0002028!9.45e-09!12;UBERON:0007277!9.45e-09!12;UBERON:0000924!2.97e-08!173;UBERON:0006601!2.97e-08!173;UBERON:0004871!4.12e-08!8;UBERON:0004732!4.37e-08!13;UBERON:0002346!6.92e-08!90;UBERON:0001874!6.97e-08!1;UBERON:0001049!1.93e-07!57;UBERON:0005068!1.93e-07!57;UBERON:0006241!1.93e-07!57;UBERON:0007135!1.93e-07!57;UBERON:0000369!2.67e-07!4;UBERON:0002435!2.67e-07!4;UBERON:0000204!2.67e-07!4;UBERON:0010082!2.67e-07!4;UBERON:0000073!3.20e-07!94;UBERON:0001016!3.20e-07!94;UBERON:0002616!3.79e-07!59;UBERON:0000010!5.00e-07!8;UBERON:0003076!5.08e-07!15;UBERON:0003057!5.08e-07!15;UBERON:0000064!8.65e-07!219|ontology_enrichment_uberon_v019=UBERON:0001987;2.21e-29;4!UBERON:0002346;6.02e-29;4!UBERON:0000923;6.02e-29;4!UBERON:0010316;6.02e-29;4!UBERON:0005291;6.02e-29;4!UBERON:0002050;2.14e-23;5!UBERON:0005423;2.14e-23;5!UBERON:0000478;2.27e-19;24!UBERON:0000305;4.36e-17;7!UBERON:0005631;2.81e-12;10!UBERON:0000158;2.81e-12;10|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.05e-32,14;UBERON:0000158,1.05e-32,14;UBERON:0001987,2.06e-29,4;UBERON:0004340,2.06e-29,4;UBERON:0000478,2.33e-19,24;UBERON:0003124,2.67e-17,7;UBERON:0000305,4.73e-17,7;UBERON:0004871,4.69e-15,8;UBERON:0004923,2.37e-07,66|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.909382714338778,3.32870879020994,8.76931850656073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0.593929361665277,3.07160702099232,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.694499979733169,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,4.63044948647668,0,0,0,0,0,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639471856518258,0,0.786329709279482,0.109209638192014,0,2.55089904122019,1.73510069962603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471346769748006,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0|short_description=p6@SLC18A3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6572 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10936 | |||
|TSSclassifier=S | |||
|UniProt=Q16572 | |||
|association_with_transcript=-60bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | |||
|coexpression_cluster_id=C1313 | |||
|description=CAGE_peak_6_at_SLC18A3_5end | |||
|id=chr10:50818275..50818286,+ | |||
|ontology_enrichment_celltype=CL:0000349!3.55e-21!3;CL:0002577!3.55e-21!3;CL:0002537!1.06e-12!5 | |||
|ontology_enrichment_celltype_v019=CL:0002577;9.22e-39;3!CL:0000349;2.68e-24;19!CL:0002537;1.81e-23;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,8.37e-39,3;CL:0000349,2.77e-24,19;CL:0002537,2.02e-23,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!2.16e-16!10;DOID:169!2.58e-10!6;DOID:2513!9.10e-08!1;DOID:3095!2.50e-07!22;DOID:2994!2.50e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:171;3.07e-12;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.98e-12,10 | |||
|ontology_enrichment_uberon=UBERON:0005631!8.53e-23!14;UBERON:0000158!8.53e-23!14;UBERON:0001987!5.04e-16!4;UBERON:0004340!5.04e-16!4;UBERON:0003124!9.95e-16!7;UBERON:0002148!5.10e-14!2;UBERON:0009662!5.10e-14!2;UBERON:0002298!4.69e-13!8;UBERON:0000478!6.12e-13!24;UBERON:0000013!2.82e-12!5;UBERON:0002410!2.82e-12!5;UBERON:0002308!1.17e-11!9;UBERON:0000125!1.17e-11!9;UBERON:0000988!1.21e-09!3;UBERON:0006331!1.21e-09!3;UBERON:0005383!1.86e-09!3;UBERON:0005382!1.86e-09!3;UBERON:0001896!2.12e-09!3;UBERON:0005290!2.12e-09!3;UBERON:0010096!2.12e-09!3;UBERON:0000305!3.30e-09!7;UBERON:0004733!9.45e-09!12;UBERON:0002028!9.45e-09!12;UBERON:0007277!9.45e-09!12;UBERON:0000924!2.97e-08!173;UBERON:0006601!2.97e-08!173;UBERON:0004871!4.12e-08!8;UBERON:0004732!4.37e-08!13;UBERON:0002346!6.92e-08!90;UBERON:0001874!6.97e-08!1;UBERON:0001049!1.93e-07!57;UBERON:0005068!1.93e-07!57;UBERON:0006241!1.93e-07!57;UBERON:0007135!1.93e-07!57;UBERON:0000369!2.67e-07!4;UBERON:0002435!2.67e-07!4;UBERON:0000204!2.67e-07!4;UBERON:0010082!2.67e-07!4;UBERON:0000073!3.20e-07!94;UBERON:0001016!3.20e-07!94;UBERON:0002616!3.79e-07!59;UBERON:0000010!5.00e-07!8;UBERON:0003076!5.08e-07!15;UBERON:0003057!5.08e-07!15;UBERON:0000064!8.65e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;2.21e-29;4!UBERON:0002346;6.02e-29;4!UBERON:0000923;6.02e-29;4!UBERON:0010316;6.02e-29;4!UBERON:0005291;6.02e-29;4!UBERON:0002050;2.14e-23;5!UBERON:0005423;2.14e-23;5!UBERON:0000478;2.27e-19;24!UBERON:0000305;4.36e-17;7!UBERON:0005631;2.81e-12;10!UBERON:0000158;2.81e-12;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.05e-32,14;UBERON:0000158,1.05e-32,14;UBERON:0001987,2.06e-29,4;UBERON:0004340,2.06e-29,4;UBERON:0000478,2.33e-19,24;UBERON:0003124,2.67e-17,7;UBERON:0000305,4.73e-17,7;UBERON:0004871,4.69e-15,8;UBERON:0004923,2.37e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.909382714338778,3.32870879020994,8.76931850656073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0.593929361665277,3.07160702099232,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.694499979733169,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,4.63044948647668,0,0,0,0,0,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639471856518258,0,0.786329709279482,0.109209638192014,0,2.55089904122019,1.73510069962603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471346769748006,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@SLC18A3 | |||
}} |
Revision as of 13:35, 10 September 2013
Short description: | p6@SLC18A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SLC18A3_5end |
Coexpression cluster: | C1313_Placental_mesothelioma_amniotic_neuroectodermal_renal_chorionic_carcinosarcoma |
Association with transcript: | -60bp_to_ENST00000374115, NM_003055, uc001jhw.2_5end |
EntrezGene: | SLC18A3 |
HGNC: | 10936 |
UniProt: | Q16572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 8.37e-39 | 3 |
extraembryonic cell | 2.77e-24 | 19 |
amnion mesenchymal stem cell | 2.02e-23 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.05e-32 | 14 |
membranous layer | 1.05e-32 | 14 |
placenta | 2.06e-29 | 4 |
allantois | 2.06e-29 | 4 |
extraembryonic structure | 2.33e-19 | 24 |
chorion | 2.67e-17 | 7 |
amnion | 4.73e-17 | 7 |
somatic layer of lateral plate mesoderm | 4.69e-15 | 8 |
organ component layer | 2.37e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.98e-12 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.