FFCP PHASE1:Hg19::chr11:20621167..20621170,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9152|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11051|TSSclassifier=S|UniProt=Q9Y345|association_with_transcript=27bp_to_ENST00000298923_5end|coexpression_cluster_id=C993|description=CAGE_peak_6_at_SLC6A5_5end|id=chr11:20621167..20621170,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;5.04e-34;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003076!1.43e-91!15;UBERON:0003057!1.43e-91!15;UBERON:0001896!1.28e-84!3;UBERON:0005290!1.28e-84!3;UBERON:0010096!1.28e-84!3;UBERON:0004733!5.23e-59!12;UBERON:0002028!5.23e-59!12;UBERON:0007277!5.23e-59!12;UBERON:0002298!9.15e-57!8;UBERON:0004732!1.60e-54!13;UBERON:0002240!4.67e-38!3;UBERON:0001049!4.74e-24!57;UBERON:0005068!4.74e-24!57;UBERON:0006241!4.74e-24!57;UBERON:0007135!4.74e-24!57;UBERON:0005174!2.54e-23!5;UBERON:0001137!2.54e-23!5;UBERON:0001017!1.05e-16!82;UBERON:0003075!3.85e-16!86;UBERON:0007284!3.85e-16!86;UBERON:0005743!5.84e-16!86;UBERON:0002148!1.15e-15!2;UBERON:0009662!1.15e-15!2;UBERON:0002346!1.92e-15!90;UBERON:0000073!1.67e-14!94;UBERON:0001016!1.67e-14!94;UBERON:0002680!1.02e-13!9;UBERON:0001895!1.02e-13!9;UBERON:0010092!1.02e-13!9;UBERON:0002616!3.45e-12!59;UBERON:0000988!6.73e-11!3;UBERON:0006331!6.73e-11!3;UBERON:0000955!2.38e-10!69;UBERON:0006238!2.38e-10!69;UBERON:0007023!4.18e-09!115;UBERON:0004121!3.00e-08!169;UBERON:0000924!4.59e-08!173;UBERON:0006601!4.59e-08!173;UBERON:0000063!1.20e-07!97;UBERON:0000025!2.76e-07!194|ontology_enrichment_uberon_v019=UBERON:0002148;3.52e-50;2!UBERON:0006331;3.52e-50;2!UBERON:0009662;3.52e-50;2!UBERON:0002680;9.75e-45;9!UBERON:0001895;9.75e-45;9!UBERON:0000988;5.04e-34;3!UBERON:0004733;5.97e-34;12!UBERON:0002028;5.97e-34;12!UBERON:0004732;1.86e-31;13!UBERON:0002037;8.34e-18;6!UBERON:0002298;8.34e-18;6!UBERON:0000125;2.31e-12;9!UBERON:0002308;2.31e-12;9|ontology_enrichment_uberon_v019_2=UBERON:0002148,2.74e-50,2;UBERON:0006331,2.74e-50,2;UBERON:0009662,2.74e-50,2;UBERON:0002680,9.75e-45,9;UBERON:0001895,9.75e-45,9;UBERON:0010092,9.75e-45,9;UBERON:0000988,4.27e-34,3;UBERON:0004733,5.98e-34,12;UBERON:0002028,5.98e-34,12;UBERON:0007277,5.98e-34,12;UBERON:0004732,1.86e-31,13;UBERON:0003076,1.82e-27,15;UBERON:0003057,1.82e-27,15;UBERON:0002298,7.67e-18,6;UBERON:0002037,9.07e-18,6;UBERON:0006215,9.07e-18,6;UBERON:0000125,2.19e-12,9;UBERON:0002308,2.19e-12,9;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93924434542326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.443716206147409,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p6@SLC6A5}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=9152 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11051 | |||
|TSSclassifier=S | |||
|UniProt=Q9Y345 | |||
|association_with_transcript=27bp_to_ENST00000298923_5end | |||
|coexpression_cluster_id=C993 | |||
|description=CAGE_peak_6_at_SLC6A5_5end | |||
|id=chr11:20621167..20621170,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.04e-34;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!1.43e-91!15;UBERON:0003057!1.43e-91!15;UBERON:0001896!1.28e-84!3;UBERON:0005290!1.28e-84!3;UBERON:0010096!1.28e-84!3;UBERON:0004733!5.23e-59!12;UBERON:0002028!5.23e-59!12;UBERON:0007277!5.23e-59!12;UBERON:0002298!9.15e-57!8;UBERON:0004732!1.60e-54!13;UBERON:0002240!4.67e-38!3;UBERON:0001049!4.74e-24!57;UBERON:0005068!4.74e-24!57;UBERON:0006241!4.74e-24!57;UBERON:0007135!4.74e-24!57;UBERON:0005174!2.54e-23!5;UBERON:0001137!2.54e-23!5;UBERON:0001017!1.05e-16!82;UBERON:0003075!3.85e-16!86;UBERON:0007284!3.85e-16!86;UBERON:0005743!5.84e-16!86;UBERON:0002148!1.15e-15!2;UBERON:0009662!1.15e-15!2;UBERON:0002346!1.92e-15!90;UBERON:0000073!1.67e-14!94;UBERON:0001016!1.67e-14!94;UBERON:0002680!1.02e-13!9;UBERON:0001895!1.02e-13!9;UBERON:0010092!1.02e-13!9;UBERON:0002616!3.45e-12!59;UBERON:0000988!6.73e-11!3;UBERON:0006331!6.73e-11!3;UBERON:0000955!2.38e-10!69;UBERON:0006238!2.38e-10!69;UBERON:0007023!4.18e-09!115;UBERON:0004121!3.00e-08!169;UBERON:0000924!4.59e-08!173;UBERON:0006601!4.59e-08!173;UBERON:0000063!1.20e-07!97;UBERON:0000025!2.76e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0002148;3.52e-50;2!UBERON:0006331;3.52e-50;2!UBERON:0009662;3.52e-50;2!UBERON:0002680;9.75e-45;9!UBERON:0001895;9.75e-45;9!UBERON:0000988;5.04e-34;3!UBERON:0004733;5.97e-34;12!UBERON:0002028;5.97e-34;12!UBERON:0004732;1.86e-31;13!UBERON:0002037;8.34e-18;6!UBERON:0002298;8.34e-18;6!UBERON:0000125;2.31e-12;9!UBERON:0002308;2.31e-12;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002148,2.74e-50,2;UBERON:0006331,2.74e-50,2;UBERON:0009662,2.74e-50,2;UBERON:0002680,9.75e-45,9;UBERON:0001895,9.75e-45,9;UBERON:0010092,9.75e-45,9;UBERON:0000988,4.27e-34,3;UBERON:0004733,5.98e-34,12;UBERON:0002028,5.98e-34,12;UBERON:0007277,5.98e-34,12;UBERON:0004732,1.86e-31,13;UBERON:0003076,1.82e-27,15;UBERON:0003057,1.82e-27,15;UBERON:0002298,7.67e-18,6;UBERON:0002037,9.07e-18,6;UBERON:0006215,9.07e-18,6;UBERON:0000125,2.19e-12,9;UBERON:0002308,2.19e-12,9;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93924434542326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.443716206147409,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@SLC6A5 | |||
}} |
Revision as of 17:10, 10 September 2013
Short description: | p6@SLC6A5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_SLC6A5_5end |
Coexpression cluster: | C993_locus_medulla_spinal_pons_small_cerebellum_amygdala |
Association with transcript: | 27bp_to_ENST00000298923_5end |
EntrezGene: | SLC6A5 |
HGNC: | 11051 |
UniProt: | Q9Y345 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
locus ceruleus | 2.74e-50 | 2 |
brainstem nucleus | 2.74e-50 | 2 |
hindbrain nucleus | 2.74e-50 | 2 |
regional part of metencephalon | 9.75e-45 | 9 |
metencephalon | 9.75e-45 | 9 |
future metencephalon | 9.75e-45 | 9 |
pons | 4.27e-34 | 3 |
segmental subdivision of hindbrain | 5.98e-34 | 12 |
hindbrain | 5.98e-34 | 12 |
presumptive hindbrain | 5.98e-34 | 12 |
segmental subdivision of nervous system | 1.86e-31 | 13 |
posterior neural tube | 1.82e-27 | 15 |
chordal neural plate | 1.82e-27 | 15 |
brainstem | 7.67e-18 | 6 |
cerebellum | 9.07e-18 | 6 |
rhombic lip | 9.07e-18 | 6 |
neural nucleus | 2.19e-12 | 9 |
nucleus of brain | 2.19e-12 | 9 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.