FFCP PHASE1:Hg19::chr12:57623992..57624003,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6472|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10852|TSSclassifier=S|UniProt=|association_with_transcript=38bp_to_ENST00000557302_5end|coexpression_cluster_id=C2221|description=CAGE_peak_9_at_SHMT2_5end|id=chr12:57623992..57624003,+|ontology_enrichment_celltype=CL:0000548!2.75e-18!679;CL:0000004!2.75e-18!679;CL:0000255!2.75e-18!679;CL:0000012!1.19e-17!682;CL:0000144!2.76e-12!625;CL:0000055!3.28e-11!180;CL:0002371!2.05e-10!591;CL:0000003!2.26e-10!722;CL:0000057!6.05e-10!75;CL:0000063!7.34e-10!578;CL:0002620!4.11e-07!23|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0.363356758541113,0.214100523890983,0.845726424575827,1.0007329835313,1.78784437770915,1.74467704820074,0,0,0.522371256399677,0.491467873003018,1.39560233594486,1.09220686065086,0.263766978228454,0,0,0.672325146451775,0,0,0,0,0.204000691244253,2.19418305034661,0,0,0,0,0,0,0,0,0.154816123316076,0,0.90361775633475,2.21852406100073,0.387336002901508,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,1.6446715520873,0.619412741790207,0.863077176966451,0.512321413058201,0.47296445977717,0,0,0,0,0.818718450173537,0.898893937780338,0.306083892370903,0.962787081228281,1.27867425159808,0,0.598390972864896,0.426224750532694,1.7412554317715,1.70215567407342,2.4912889959823,0.502497330513487,0,0.217188844705117,2.42159801053347,1.47311054395026,1.58231193720442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15076305659177,2.1686349143074,2.00535164254356,1.01392563272577,0,1.94653948121054,0.0945348171640679,0,0,0,1.82147644146271,0,0,0,0,0,0,0,2.18638648103376,0.860234595106124,0.347140501607594,0.56530794192401,0.419499436209906,0,0.208994966536811,0,0,0.33472061276467,0,0.760272105718513,0,0,0,0,0,0.337834441449967,3.06633274931766,0,1.09921046358244,0,0,0.436094052142534,1.98788780678127,0.506522046658319,0.397227542439656,1.14734648299525,0.354668382198357,0.560677600142307,0,2.96001058100592,0,2.55950276932407,0,1.36221684880438,0,5.38939293217732,0,1.71141546463335,0.298897361103602,0.822041490506354,0.485618833104395,0.140450806702248,0.204154171254893,0.122834317311768,1.44656093646072,0,2.47266929278557,3.64064544775211,1.43723628363248,0.336672227908132,0.125118519871964,0,1.31693286264251,0.919463387397059,1.20190447125277,0.453728732640084,0.717558542755448,1.92201649936711,0.847727604638247,0.300091096084402,1.03052529238439,1.03056216018252,0.744467425326359,0.506328996723799,1.16924406193438,0.757301322732344,1.56484827691909,0.323292113637624,1.77504796258307,0.403008392910561,0.847802961552438,0,0,0,0.975789649036763,0.265059536642971,0.116193942869518,0.725627385107593,0,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.220587945464788,0,0,0.269662616320329,0,0,0,1.40241773803446,0,0,0,4.91413608338813,3.54473944008842,0,0.122988438543114,0.686271241194102,0,3.37205259772859,0.301586917234893,0.0925884451585296,10.1000574646201,0,0,0.231860809950154,1.17408694235822,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.626909658919938,1.45316969256981,0,0,0.176096868026452,0,0,0,0,1.90994212779139,0,0,0,0,0,1.12131084345361,3.05172048183296,0.22001485746285,0.258543431515556,3.57656445851882,0,1.59562869950922,1.04007436911366,0.257207374262142,0,0,1.14382394926518,3.25572963234866,0,0,2.48774364119782,0,0,0,0,0,0,2.10833939483032,1.91699884393266,5.7430967917057,0,0.144781306667579,0,0,1.68127715990291,0,0,0,0,0,0,0,0,0,0,0,0,0,3.52644530809656,0.623912584592421,1.07057393278297,0.473107245101804,0.819989904948992,0.902838299183157,2.27407504055985,8.27784570340039,0,0.368738337083406,0.0868836144680828,1.37060810223918,0.686286847621712,0,0,0,0.606255142892519,0,1.5119514666484,0.992431231275107,0.460385919864187,1.12264037773229,0.512556597022804,0,1.60853921143608,1.48418066444991,0.154209693802656,0.532685175939381,0.0821271560138091,0,0.232420756919918,0.120859449591622,0.200506470303285,0.368323955743585,0.459257792658427,0.364182336013434,1.18011973463482,2.25599806453706,0.308061348417659,1.56869953835371,0,0,1.13733384070897,0.170093705276516,0,0,0.270946437543853,0,0.764628819135115,1.66215201785745,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0.574265537996172,0,0,2.22342652071881,0,0.15350367472613,0.275673144969061,0.429680979473094,0,0.255679882248303,0.801288320820636,0.826424576804891,1.15314040419064,0,0.910420027699949,3.253918845081,1.25924938732256,0.6970372701606,0.308033580176089,0,0.869932992075073,0.55597265731176,2.86249773483982,0,0,0.190630193923825,0.255897791311334,1.28381696410176,1.90921948755562,0.78494864019923,0,0,0.589062011728432,0.404364963146632,1.58510321173008,0,0,0.7311404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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6472 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=38bp_to_ENST00000557302_5end | |||
|coexpression_cluster_id=C2221 | |||
|description=CAGE_peak_9_at_SHMT2_5end | |||
|id=chr12:57623992..57624003,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.75e-18!679;CL:0000004!2.75e-18!679;CL:0000255!2.75e-18!679;CL:0000012!1.19e-17!682;CL:0000144!2.76e-12!625;CL:0000055!3.28e-11!180;CL:0002371!2.05e-10!591;CL:0000003!2.26e-10!722;CL:0000057!6.05e-10!75;CL:0000063!7.34e-10!578;CL:0002620!4.11e-07!23 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p9@SHMT2 | |||
}} |
Revision as of 23:38, 10 September 2013
Short description: | p9@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_SHMT2_5end |
Coexpression cluster: | C2221_Mesenchymal_Fibroblast_Keratocytes_Keratinocyte_Osteoblast_mesenchymal_Hepatocyte |
Association with transcript: | 38bp_to_ENST00000557302_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.