FFCP PHASE1:Hg19::chr15:33023180..33023193,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26585|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=2001|TSSclassifier=N|UniProt=O60565|association_with_transcript=288bp_to_AF045800,BC069525,CU686886,HQ448400_5end|coexpression_cluster_id=C316|description=CAGE_peak_15_at_GREM1_5end|id=chr15:33023180..33023193,+|ontology_enrichment_celltype=CL:0000057!5.76e-32!75;CL:0000055!9.08e-28!180;CL:0002620!4.31e-19!23;CL:0002334!1.31e-15!12;CL:0000048!8.28e-14!430;CL:0000723!3.50e-13!436;CL:0000034!2.22e-12!444;CL:0002320!2.01e-08!365;CL:0000134!3.32e-08!358;CL:0002371!2.83e-07!591;CL:0000680!4.45e-07!57;CL:0000056!4.45e-07!57;CL:0000355!4.45e-07!57;CL:0000192!5.32e-07!42;CL:0000514!5.32e-07!42|ontology_enrichment_celltype_v019=CL:0002334;1.26e-22;12!CL:0002620;1.48e-15;23!CL:0000057;2.44e-10;73!CL:0000135;2.70e-10;3!CL:0000388;2.70e-10;3!CL:0002579;3.55e-10;3!CL:0002539;5.76e-10;10!CL:0002580;9.58e-10;3!CL:0002559;1.35e-09;5!CL:0002615;4.82e-09;3!CL:0000136;1.34e-07;13!CL:0002617;6.46e-07;2|ontology_enrichment_celltype_v019_2=CL:0000057,2.15e-29,76;CL:0002334,3.35e-22,12;CL:0002620,1.67e-15,23;CL:0000048,2.11e-10,427;CL:0000135,2.58e-10,3;CL:0000388,2.58e-10,3;CL:0002539,3.25e-10,10;CL:0002579,3.73e-10,3;CL:0000723,4.51e-10,433;CL:0002559,1.13e-09,5;CL:0000034,1.20e-09,441;CL:0002580,1.27e-09,3;CL:0000134,3.00e-09,354;CL:0002320,7.61e-09,361;CL:0002615,8.27e-09,3;CL:0000136,1.27e-08,15;CL:0000219,4.83e-08,386;CL:0002617,4.07e-07,2;CL:0002561,9.92e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!2.55e-07!5;DOID:450!2.55e-07!5;DOID:66!2.55e-07!5;DOID:423!2.55e-07!5;DOID:0080000!2.55e-07!5;DOID:11722!2.55e-07!5|ontology_enrichment_disease_v019=DOID:17;2.33e-09;5!DOID:450;2.33e-09;5!DOID:66;2.33e-09;5!DOID:423;2.33e-09;5!DOID:0080000;2.33e-09;5!DOID:11722;2.33e-09;5|ontology_enrichment_disease_v019_2=DOID:17,1.55e-09,5;DOID:450,1.55e-09,5;DOID:66,1.55e-09,5;DOID:423,1.55e-09,5;DOID:0080000,1.55e-09,5;DOID:11722,1.55e-09,5|ontology_enrichment_uberon=UBERON:0002199!5.41e-15!45;UBERON:0002416!5.41e-15!45;UBERON:0002097!6.33e-15!40;UBERON:0003102!1.06e-13!95;UBERON:0000914!5.12e-13!83;UBERON:0002329!5.12e-13!83;UBERON:0003077!5.12e-13!83;UBERON:0003059!5.12e-13!83;UBERON:0007282!5.12e-13!83;UBERON:0009618!5.12e-13!83;UBERON:0007285!5.12e-13!83;UBERON:0004290!1.60e-09!70;UBERON:0003688!5.02e-09!6;UBERON:0002358!5.02e-09!6;UBERON:0003684!5.02e-09!6;UBERON:0001178!5.02e-09!6;UBERON:0001135!5.46e-09!15;UBERON:0002384!1.71e-08!375;UBERON:0000486!3.75e-08!82;UBERON:0005256!6.44e-08!143;UBERON:0002100!3.32e-07!216;UBERON:0000475!5.87e-07!365|ontology_enrichment_uberon_v019=UBERON:0003688;1.71e-17;6!UBERON:0002358;1.71e-17;6!UBERON:0003684;1.71e-17;6!UBERON:0001178;1.71e-17;6!UBERON:0002097;9.53e-14;41!UBERON:0004457;2.02e-11;9!UBERON:0000042;2.02e-11;9!UBERON:0002199;2.39e-10;46!UBERON:0002416;2.39e-10;46!UBERON:0007846;2.70e-10;3!UBERON:0000043;2.70e-10;3!UBERON:0007845;2.70e-10;3!UBERON:0004237;5.76e-10;10!UBERON:0004695;5.76e-10;10!UBERON:0002111;5.76e-10;10!UBERON:0004178;5.76e-10;10!UBERON:0002073;1.35e-09;5!UBERON:0001135;1.65e-08;15!UBERON:0003102;2.25e-08;50!UBERON:0000310;2.67e-07;10!UBERON:0005406;4.58e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.13e-17,6;UBERON:0002358,3.13e-17,6;UBERON:0003684,3.13e-17,6;UBERON:0001178,3.13e-17,6;UBERON:0002097,2.66e-16,41;UBERON:0002199,7.53e-16,46;UBERON:0002416,7.53e-16,46;UBERON:0003102,5.92e-12,99;UBERON:0007846,2.58e-10,3;UBERON:0000043,2.58e-10,3;UBERON:0007845,2.58e-10,3;UBERON:0004237,3.25e-10,10;UBERON:0004695,3.25e-10,10;UBERON:0002111,3.25e-10,10;UBERON:0004178,3.25e-10,10;UBERON:0002073,1.13e-09,5;UBERON:0005086,1.13e-09,5;UBERON:0002384,5.76e-09,371;UBERON:0001135,1.18e-08,15;UBERON:0004457,2.93e-08,12;UBERON:0000042,2.93e-08,12;UBERON:0000310,2.46e-07,10;UBERON:0005406,4.32e-07,2;UBERON:0005933,9.92e-07,2;UBERON:0005942,9.92e-07,2;UBERON:0005932,9.92e-07,2|phase1_expression=1.99846217197612,4.92431204949261,1.12763523276777,1.0007329835313,2.68176656656373,9.59572376510406,0,0,0,0,0,0,0,0.37129905888014,0,4.70627602516243,3.61616716814386,2.92124036154949,1.95173119516203,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,2.91980922181582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,0.25326102332916,0.662045904066094,0.860509862246441,0,0.560677600142307,0,0.49333509683432,0,0.269421344139376,0,0,0,0,0.936480230490962,0,0.896692083310806,0.23486899728753,0.323745888736263,0.280901613404497,0.204154171254893,0,0,3.56400857184616,6.92347401979959,0,0,0.168336113954066,0.250237039743928,0,2.19488810440419,7.66219489497549,5.10809400282429,0,1.97328599257748,0.427114777637135,2.7551147150743,2.10063767259082,1.95799805553034,0.515281080091258,2.233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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26585 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |||
|TSSclassifier=N | |||
|UniProt=O60565 | |||
|association_with_transcript=288bp_to_AF045800,BC069525,CU686886,HQ448400_5end | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_15_at_GREM1_5end | |||
|id=chr15:33023180..33023193,+ | |||
|ontology_enrichment_celltype=CL:0000057!5.76e-32!75;CL:0000055!9.08e-28!180;CL:0002620!4.31e-19!23;CL:0002334!1.31e-15!12;CL:0000048!8.28e-14!430;CL:0000723!3.50e-13!436;CL:0000034!2.22e-12!444;CL:0002320!2.01e-08!365;CL:0000134!3.32e-08!358;CL:0002371!2.83e-07!591;CL:0000680!4.45e-07!57;CL:0000056!4.45e-07!57;CL:0000355!4.45e-07!57;CL:0000192!5.32e-07!42;CL:0000514!5.32e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.26e-22;12!CL:0002620;1.48e-15;23!CL:0000057;2.44e-10;73!CL:0000135;2.70e-10;3!CL:0000388;2.70e-10;3!CL:0002579;3.55e-10;3!CL:0002539;5.76e-10;10!CL:0002580;9.58e-10;3!CL:0002559;1.35e-09;5!CL:0002615;4.82e-09;3!CL:0000136;1.34e-07;13!CL:0002617;6.46e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.15e-29,76;CL:0002334,3.35e-22,12;CL:0002620,1.67e-15,23;CL:0000048,2.11e-10,427;CL:0000135,2.58e-10,3;CL:0000388,2.58e-10,3;CL:0002539,3.25e-10,10;CL:0002579,3.73e-10,3;CL:0000723,4.51e-10,433;CL:0002559,1.13e-09,5;CL:0000034,1.20e-09,441;CL:0002580,1.27e-09,3;CL:0000134,3.00e-09,354;CL:0002320,7.61e-09,361;CL:0002615,8.27e-09,3;CL:0000136,1.27e-08,15;CL:0000219,4.83e-08,386;CL:0002617,4.07e-07,2;CL:0002561,9.92e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!2.55e-07!5;DOID:450!2.55e-07!5;DOID:66!2.55e-07!5;DOID:423!2.55e-07!5;DOID:0080000!2.55e-07!5;DOID:11722!2.55e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.33e-09;5!DOID:450;2.33e-09;5!DOID:66;2.33e-09;5!DOID:423;2.33e-09;5!DOID:0080000;2.33e-09;5!DOID:11722;2.33e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.55e-09,5;DOID:450,1.55e-09,5;DOID:66,1.55e-09,5;DOID:423,1.55e-09,5;DOID:0080000,1.55e-09,5;DOID:11722,1.55e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!5.41e-15!45;UBERON:0002416!5.41e-15!45;UBERON:0002097!6.33e-15!40;UBERON:0003102!1.06e-13!95;UBERON:0000914!5.12e-13!83;UBERON:0002329!5.12e-13!83;UBERON:0003077!5.12e-13!83;UBERON:0003059!5.12e-13!83;UBERON:0007282!5.12e-13!83;UBERON:0009618!5.12e-13!83;UBERON:0007285!5.12e-13!83;UBERON:0004290!1.60e-09!70;UBERON:0003688!5.02e-09!6;UBERON:0002358!5.02e-09!6;UBERON:0003684!5.02e-09!6;UBERON:0001178!5.02e-09!6;UBERON:0001135!5.46e-09!15;UBERON:0002384!1.71e-08!375;UBERON:0000486!3.75e-08!82;UBERON:0005256!6.44e-08!143;UBERON:0002100!3.32e-07!216;UBERON:0000475!5.87e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.71e-17;6!UBERON:0002358;1.71e-17;6!UBERON:0003684;1.71e-17;6!UBERON:0001178;1.71e-17;6!UBERON:0002097;9.53e-14;41!UBERON:0004457;2.02e-11;9!UBERON:0000042;2.02e-11;9!UBERON:0002199;2.39e-10;46!UBERON:0002416;2.39e-10;46!UBERON:0007846;2.70e-10;3!UBERON:0000043;2.70e-10;3!UBERON:0007845;2.70e-10;3!UBERON:0004237;5.76e-10;10!UBERON:0004695;5.76e-10;10!UBERON:0002111;5.76e-10;10!UBERON:0004178;5.76e-10;10!UBERON:0002073;1.35e-09;5!UBERON:0001135;1.65e-08;15!UBERON:0003102;2.25e-08;50!UBERON:0000310;2.67e-07;10!UBERON:0005406;4.58e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.13e-17,6;UBERON:0002358,3.13e-17,6;UBERON:0003684,3.13e-17,6;UBERON:0001178,3.13e-17,6;UBERON:0002097,2.66e-16,41;UBERON:0002199,7.53e-16,46;UBERON:0002416,7.53e-16,46;UBERON:0003102,5.92e-12,99;UBERON:0007846,2.58e-10,3;UBERON:0000043,2.58e-10,3;UBERON:0007845,2.58e-10,3;UBERON:0004237,3.25e-10,10;UBERON:0004695,3.25e-10,10;UBERON:0002111,3.25e-10,10;UBERON:0004178,3.25e-10,10;UBERON:0002073,1.13e-09,5;UBERON:0005086,1.13e-09,5;UBERON:0002384,5.76e-09,371;UBERON:0001135,1.18e-08,15;UBERON:0004457,2.93e-08,12;UBERON:0000042,2.93e-08,12;UBERON:0000310,2.46e-07,10;UBERON:0005406,4.32e-07,2;UBERON:0005933,9.92e-07,2;UBERON:0005942,9.92e-07,2;UBERON:0005932,9.92e-07,2 | |||
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|short_description=p15@GREM1 | |||
}} |
Revision as of 06:35, 11 September 2013
Short description: | p15@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 288bp_to_AF045800, BC069525, CU686886, HQ448400_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | O60565 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.15e-29 | 76 |
preadipocyte | 3.35e-22 | 12 |
skin fibroblast | 1.67e-15 | 23 |
multi fate stem cell | 2.11e-10 | 427 |
fibrocyte | 2.58e-10 | 3 |
tendon cell | 2.58e-10 | 3 |
aortic smooth muscle cell | 3.25e-10 | 10 |
omentum preadipocyte | 3.73e-10 | 3 |
somatic stem cell | 4.51e-10 | 433 |
hair follicle cell | 1.13e-09 | 5 |
stem cell | 1.20e-09 | 441 |
preadipocyte of the breast | 1.27e-09 | 3 |
mesenchymal cell | 3.00e-09 | 354 |
connective tissue cell | 7.61e-09 | 361 |
adipocyte of omentum tissue | 8.27e-09 | 3 |
fat cell | 1.27e-08 | 15 |
motile cell | 4.83e-08 | 386 |
adipocyte of breast | 4.07e-07 | 2 |
outer root sheath cell | 9.92e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.13e-17 | 6 |
peritoneum | 3.13e-17 | 6 |
abdominal cavity | 3.13e-17 | 6 |
visceral peritoneum | 3.13e-17 | 6 |
skin of body | 2.66e-16 | 41 |
integument | 7.53e-16 | 46 |
integumental system | 7.53e-16 | 46 |
surface structure | 5.92e-12 | 99 |
dense regular connective tissue | 2.58e-10 | 3 |
tendon | 2.58e-10 | 3 |
regular connective tissue | 2.58e-10 | 3 |
blood vessel smooth muscle | 3.25e-10 | 10 |
arterial system smooth muscle | 3.25e-10 | 10 |
artery smooth muscle tissue | 3.25e-10 | 10 |
aorta smooth muscle tissue | 3.25e-10 | 10 |
hair follicle | 1.13e-09 | 5 |
hair follicle placode | 1.13e-09 | 5 |
connective tissue | 5.76e-09 | 371 |
smooth muscle tissue | 1.18e-08 | 15 |
cavity lining | 2.93e-08 | 12 |
serous membrane | 2.93e-08 | 12 |
breast | 2.46e-07 | 10 |
perirenal fat | 4.32e-07 | 2 |
hair root sheath | 9.92e-07 | 2 |
hair outer root sheath | 9.92e-07 | 2 |
bulb of hair follicle | 9.92e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.55e-09 | 5 |
myotonic disease | 1.55e-09 | 5 |
muscle tissue disease | 1.55e-09 | 5 |
myopathy | 1.55e-09 | 5 |
muscular disease | 1.55e-09 | 5 |
myotonic dystrophy | 1.55e-09 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.