FFCP PHASE1:Hg19::chr17:76120099..76120114,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11322|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18021|TSSclassifier=S|UniProt=Q7Z403|association_with_transcript=5bp_to_AB002405_5end|description=CAGE_peak_5_at_TMC6_5end|id=chr17:76120099..76120114,-|ontology_enrichment_celltype=CL:0002032!1.05e-21!165;CL:0000837!1.05e-21!165;CL:0000037!1.08e-21!172;CL:0000566!1.08e-21!172;CL:0000988!1.43e-19!182;CL:0000738!2.06e-14!140;CL:0000542!2.61e-14!53;CL:0000051!2.61e-14!53;CL:0000838!7.31e-14!52;CL:0002087!6.60e-12!119;CL:0002031!8.07e-11!124;CL:0000763!4.12e-09!112;CL:0000049!4.12e-09!112;CL:0000084!4.19e-07!25;CL:0000827!4.19e-07!25|ontology_enrichment_celltype_v019=CL:0000542;7.24e-08;53!CL:0000775;2.27e-07;3!CL:0000791;4.54e-07;18!CL:0000789;4.54e-07;18!CL:0002419;4.54e-07;18|ontology_enrichment_celltype_v019_2=CL:0000037,8.11e-20,168;CL:0002032,2.65e-18,161;CL:0000837,2.65e-18,161;CL:0000988,5.41e-18,177;CL:0000542,1.08e-13,53;CL:0000051,1.08e-13,53;CL:0000738,2.03e-13,136;CL:0000838,6.57e-13,52;CL:0002087,3.30e-09,115;CL:0000775,2.27e-07,3;CL:0002031,3.27e-07,120;CL:0000791,4.64e-07,18;CL:0000789,4.64e-07,18;CL:0002420,4.64e-07,18;CL:0002419,4.64e-07,18;CL:0000790,4.64e-07,18;CL:0000763,5.33e-07,108;CL:0000049,5.33e-07,108|ontology_enrichment_development_v019=CL:0000051;7.24e-08;53!CL:0000790;4.54e-07;18|ontology_enrichment_disease=DOID:2531!2.68e-10!51;DOID:0060083!2.68e-10!51;DOID:1240!3.55e-10!39;DOID:8692!3.95e-08!31|ontology_enrichment_disease_v019=DOID:8692;6.92e-08;31!DOID:1240;2.64e-07;39!DOID:2531;6.35e-07;51!DOID:0060083;6.35e-07;51|ontology_enrichment_disease_v019_2=DOID:2531,8.45e-09,51;DOID:0060083,8.45e-09,51;DOID:1240,3.50e-08,39;DOID:8692,1.51e-07,31|ontology_enrichment_uberon=UBERON:0007023!5.44e-15!115;UBERON:0001049!2.24e-10!57;UBERON:0005068!2.24e-10!57;UBERON:0006241!2.24e-10!57;UBERON:0007135!2.24e-10!57;UBERON:0002780!3.58e-08!41;UBERON:0001890!3.58e-08!41;UBERON:0006240!3.58e-08!41;UBERON:0002616!1.01e-07!59;UBERON:0003080!1.01e-07!42;UBERON:0002020!2.96e-07!34;UBERON:0003528!2.96e-07!34;UBERON:0001893!4.63e-07!34;UBERON:0002791!7.81e-07!33|ontology_enrichment_uberon_v019=UBERON:0000178;5.68e-08;15!UBERON:0000179;5.68e-08;15!UBERON:0000463;5.68e-08;15!UBERON:0002298;6.96e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.82e-10,56;UBERON:0005068,1.82e-10,56;UBERON:0006241,1.82e-10,56;UBERON:0007135,1.82e-10,56;UBERON:0000073,5.88e-09,53;UBERON:0002616,5.88e-09,53;UBERON:0007023,1.13e-08,114;UBERON:0000178,3.29e-08,15;UBERON:0000179,3.29e-08,15;UBERON:0000463,3.29e-08,15;UBERON:0002298,6.53e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29902789771517,0.738905305049512,1.49550484495991,0,0.767658796194425,0.619264493264304,0,0,0,1.00707360754392,1.42169232487422,0,0,2.20598892217156,0.868043482863407,0.447830948479849,0,0.257575567634187,0.726991193897824,0.377875943688809,0,0.232429036905685,0,0.309706370895104,0,0.256160706529101,0,0.344745680736619,0,1.35426486594342,0.188242339542605,0.545812300115692,0,0,0,0,0,0.199463657621632,0.852449501065388,0,0,0,0.251248665256743,0,0.434377689410233,0,0,0,1.26753171787165,1.27562579979026,0.838634582033504,1.46027220490444,1.05123824989054,1.92870704036496,0.570025487482497,1.59133341759272,0.91332076882317,0,0,0.889509253863555,0,0.400395987036012,0.574752439954483,0,0.954053754535364,3.41527781465669,2.34894875748376,2.29363936875137,0,0,0,2.16380747125216,3.53709686474248,3.90642848099067,2.17342444007882,0.651844533267181,1.4203434172042,0,1.22551502573691,2.06224135232386,1.55073726208535,3.79125409271022,2.94610035369053,1.1705341280389,2.63100647365882,1.93445012450094,3.47763702882063,3.26230438956533,1.87278579662799,5.22677619024884,2.83273356743915,0.766440987203842,0.68725489096526,4.04831507231205,0,3.25541726928209,0,0.150575119077773,0.76791966692651,1.24930726552346,0.947109008176067,0,0.604820229674197,3.7441627409691,3.76543450095277,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0.458426764241994,0,0,0,0.522389211897802,0.531831842075461,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.71153252537342,0.33472061276467,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.272746120590835,0,0.121973706129595,0.530119073285941,0.232387885739037,0.414644220061482,0,0,0,0,0,0,0,0.473227200159376,0.168584690078102,0.964044119533928,0.441175890929576,0,0.949082476444386,0,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0.171567810298526,0.439001141634502,0,0.100528972411631,0.462942225792648,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0.702012795417713,0.297262324577456,0,0.503946384596579,0,0.0895585227028483,0,0,5.91195885475132,1.49682337822484,0,0.576479813667846,0,0.380987365753014,0,0,0,0.308482478109971,0.300343057843917,0.571652865261156,0.448524337381443,0,0.07333828582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,6.02026249236095,0,0.475940431336403,0,0,0,0,0,0,0,0.506794004045748,0.305966489225945,0.26721740526556,1.19463369395298,0.250707539292375,0.0757786982182394,0.267964130156178,3.31667775783512,3.51672185930444,0.639701945702943,0,0.193766729508018,1.92431614317159,0,0.0636471582781649,0.808468755832877,0,0,2.1552656964668,0.143444410785353,0,0.0814032686109745,0.106727345877715,0,0,0,0.122241444182866,0,0,0.603821380773079,1.28227396921293|short_description=p5@TMC6}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=11322 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18021 | |||
|TSSclassifier=S | |||
|UniProt=Q7Z403 | |||
|association_with_transcript=5bp_to_AB002405_5end | |||
|description=CAGE_peak_5_at_TMC6_5end | |||
|id=chr17:76120099..76120114,- | |||
|ontology_enrichment_celltype=CL:0002032!1.05e-21!165;CL:0000837!1.05e-21!165;CL:0000037!1.08e-21!172;CL:0000566!1.08e-21!172;CL:0000988!1.43e-19!182;CL:0000738!2.06e-14!140;CL:0000542!2.61e-14!53;CL:0000051!2.61e-14!53;CL:0000838!7.31e-14!52;CL:0002087!6.60e-12!119;CL:0002031!8.07e-11!124;CL:0000763!4.12e-09!112;CL:0000049!4.12e-09!112;CL:0000084!4.19e-07!25;CL:0000827!4.19e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;7.24e-08;53!CL:0000775;2.27e-07;3!CL:0000791;4.54e-07;18!CL:0000789;4.54e-07;18!CL:0002419;4.54e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,8.11e-20,168;CL:0002032,2.65e-18,161;CL:0000837,2.65e-18,161;CL:0000988,5.41e-18,177;CL:0000542,1.08e-13,53;CL:0000051,1.08e-13,53;CL:0000738,2.03e-13,136;CL:0000838,6.57e-13,52;CL:0002087,3.30e-09,115;CL:0000775,2.27e-07,3;CL:0002031,3.27e-07,120;CL:0000791,4.64e-07,18;CL:0000789,4.64e-07,18;CL:0002420,4.64e-07,18;CL:0002419,4.64e-07,18;CL:0000790,4.64e-07,18;CL:0000763,5.33e-07,108;CL:0000049,5.33e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000051;7.24e-08;53!CL:0000790;4.54e-07;18 | |||
|ontology_enrichment_disease=DOID:2531!2.68e-10!51;DOID:0060083!2.68e-10!51;DOID:1240!3.55e-10!39;DOID:8692!3.95e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;6.92e-08;31!DOID:1240;2.64e-07;39!DOID:2531;6.35e-07;51!DOID:0060083;6.35e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,8.45e-09,51;DOID:0060083,8.45e-09,51;DOID:1240,3.50e-08,39;DOID:8692,1.51e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.44e-15!115;UBERON:0001049!2.24e-10!57;UBERON:0005068!2.24e-10!57;UBERON:0006241!2.24e-10!57;UBERON:0007135!2.24e-10!57;UBERON:0002780!3.58e-08!41;UBERON:0001890!3.58e-08!41;UBERON:0006240!3.58e-08!41;UBERON:0002616!1.01e-07!59;UBERON:0003080!1.01e-07!42;UBERON:0002020!2.96e-07!34;UBERON:0003528!2.96e-07!34;UBERON:0001893!4.63e-07!34;UBERON:0002791!7.81e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.68e-08;15!UBERON:0000179;5.68e-08;15!UBERON:0000463;5.68e-08;15!UBERON:0002298;6.96e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.82e-10,56;UBERON:0005068,1.82e-10,56;UBERON:0006241,1.82e-10,56;UBERON:0007135,1.82e-10,56;UBERON:0000073,5.88e-09,53;UBERON:0002616,5.88e-09,53;UBERON:0007023,1.13e-08,114;UBERON:0000178,3.29e-08,15;UBERON:0000179,3.29e-08,15;UBERON:0000463,3.29e-08,15;UBERON:0002298,6.53e-07,6 | |||
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| |||
|short_description=p5@TMC6 | |||
}} |
Revision as of 16:00, 11 September 2013
Short description: | p5@TMC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_TMC6_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_AB002405_5end |
EntrezGene: | TMC6 |
HGNC: | 18021 |
UniProt: | Q7Z403 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 8.11e-20 | 168 |
hematopoietic oligopotent progenitor cell | 2.65e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.65e-18 | 161 |
hematopoietic cell | 5.41e-18 | 177 |
lymphocyte | 1.08e-13 | 53 |
common lymphoid progenitor | 1.08e-13 | 53 |
leukocyte | 2.03e-13 | 136 |
lymphoid lineage restricted progenitor cell | 6.57e-13 | 52 |
nongranular leukocyte | 3.30e-09 | 115 |
neutrophil | 2.27e-07 | 3 |
hematopoietic lineage restricted progenitor cell | 3.27e-07 | 120 |
mature alpha-beta T cell | 4.64e-07 | 18 |
alpha-beta T cell | 4.64e-07 | 18 |
immature T cell | 4.64e-07 | 18 |
mature T cell | 4.64e-07 | 18 |
immature alpha-beta T cell | 4.64e-07 | 18 |
myeloid cell | 5.33e-07 | 108 |
common myeloid progenitor | 5.33e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.82e-10 | 56 |
neural rod | 1.82e-10 | 56 |
future spinal cord | 1.82e-10 | 56 |
neural keel | 1.82e-10 | 56 |
regional part of nervous system | 5.88e-09 | 53 |
regional part of brain | 5.88e-09 | 53 |
adult organism | 1.13e-08 | 114 |
blood | 3.29e-08 | 15 |
haemolymphatic fluid | 3.29e-08 | 15 |
organism substance | 3.29e-08 | 15 |
brainstem | 6.53e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 8.45e-09 | 51 |
immune system cancer | 8.45e-09 | 51 |
leukemia | 3.50e-08 | 39 |
myeloid leukemia | 1.51e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.