FFCP PHASE1:Hg19::chr19:42392119..42392153,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9138|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=681|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_AB590439,DQ893592,DQ895004,EU832644,EU832721_5end|coexpression_cluster_id=C18|description=CAGE_peak_5_at_ARHGEF1_5end|id=chr19:42392119..42392153,+|ontology_enrichment_celltype=CL:0000542!4.08e-22!53;CL:0000051!4.08e-22!53;CL:0000838!1.22e-21!52;CL:0000791!6.17e-18!18;CL:0000789!6.17e-18!18;CL:0002420!6.17e-18!18;CL:0002419!6.17e-18!18;CL:0000790!6.17e-18!18;CL:0002087!2.73e-16!119;CL:0000738!1.23e-15!140;CL:0000084!7.29e-15!25;CL:0000827!7.29e-15!25;CL:0000037!9.68e-13!172;CL:0000566!9.68e-13!172;CL:0000625!8.99e-12!11;CL:0002031!1.23e-11!124;CL:0000988!1.24e-11!182;CL:0002032!4.33e-11!165;CL:0000837!4.33e-11!165;CL:0000624!4.55e-07!6|ontology_enrichment_celltype_v019=CL:0000791;4.16e-39;18!CL:0000789;4.16e-39;18!CL:0002419;4.16e-39;18!CL:0000084;8.56e-30;25!CL:0000625;7.16e-25;11!CL:0000624;3.59e-14;6!CL:0000542;5.69e-14;53!CL:0000226;5.56e-08;3!CL:0000842;5.56e-08;3!CL:0000898;6.02e-08;3!CL:0000623;7.65e-08;3|ontology_enrichment_celltype_v019_2=CL:0000791,4.33e-39,18;CL:0000789,4.33e-39,18;CL:0002420,4.33e-39,18;CL:0002419,4.33e-39,18;CL:0000790,4.33e-39,18;CL:0000084,9.27e-30,25;CL:0000827,9.27e-30,25;CL:0000838,1.03e-26,52;CL:0000542,4.76e-26,53;CL:0000051,4.76e-26,53;CL:0000625,6.49e-25,11;CL:0002087,5.56e-15,115;CL:0000738,9.33e-15,136;CL:0000624,3.68e-14,6;CL:0000037,4.64e-13,168;CL:0000988,1.46e-12,177;CL:0002032,2.35e-11,161;CL:0000837,2.35e-11,161;CL:0002031,6.86e-11,120;CL:0000226,5.44e-08,3;CL:0000842,5.44e-08,3;CL:0000898,6.10e-08,3;CL:0000623,7.65e-08,3;CL:0000825,7.65e-08,3|ontology_enrichment_development_v019=CL:0000790;4.16e-39;18!CL:0000051;5.69e-14;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.01e-16!115;UBERON:0000178!4.98e-10!15;UBERON:0000179!4.98e-10!15;UBERON:0000463!4.98e-10!15|ontology_enrichment_uberon_v019=UBERON:0000178;2.29e-20;15!UBERON:0000179;2.29e-20;15!UBERON:0000463;2.29e-20;15!UBERON:0002390;6.58e-15;32!UBERON:0002193;2.69e-10;42!UBERON:0004177;8.40e-07;5!UBERON:0005057;8.40e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.28e-20,15;UBERON:0000179,2.28e-20,15;UBERON:0000463,2.28e-20,15;UBERON:0004177,2.91e-10,7;UBERON:0005057,2.91e-10,7;UBERON:0002370,6.94e-09,4;UBERON:0005058,6.94e-09,4;UBERON:0009113,6.94e-09,4;UBERON:0003295,6.94e-09,4;UBERON:0005562,6.94e-09,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.61130724598361,0.164201178899891,0.314843125254717,2.75354993794233,2.30297638858328,2.94150634300544,0,0,0,0.852139206383318,0.426507697462265,0.587200878669695,2.76997704265939,2.20598892217156,1.95309783644267,0,2.59114932815184,0.515151135268373,0.290796477559129,0,0,0.697287110717054,0,0,0.575384784644301,0.256160706529101,0.236482229888585,0.689491361473237,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0,1.81619850790011,0.368277635987565,0,0,0,0,0.112328631146495,0.150176892841506,0,0.285012743741249,0.19891667719909,0.182664153764634,0,0.546138611262131,4.44754626931777,0.426730222566507,0.800791974072025,0,1.32208974556972,0,1.70763890732835,1.76171156811282,3.82273228125229,6.60856642895129,4.48406850385229,0,17.5071695401311,11.0043013569766,6.99045096598331,7.85776528336187,37.4810606628629,35.9820332358397,52.6032166701361,3.56513462032555,7.65975359434577,5.98141515375777,7.58250818542044,2.81800903396485,2.73124629875744,4.1109476150919,2.48715016007264,4.63684937176084,33.0679035851395,36.385552620201,33.4513676175926,3.17266159553185,8.04763036564035,6.8725489096526,9.36172860472161,8.91983160107471,14.9749194386976,7.60361635558699,21.5322420281215,19.3259782843172,4.99722906209383,9.47109008176067,12.3169199538157,17.5397866605517,9.09296665663925,24.1856754484274,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.72038491523742,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0.179060963239896,2.24170287987055,12.8069994131253,6.03757209606648,11.5508732651774,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0,0,0,0,12.819617619619,8.19713963110744,11.4198486849685,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9138 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=681 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_AB590439,DQ893592,DQ895004,EU832644,EU832721_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_5_at_ARHGEF1_5end | |||
|id=chr19:42392119..42392153,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.08e-22!53;CL:0000051!4.08e-22!53;CL:0000838!1.22e-21!52;CL:0000791!6.17e-18!18;CL:0000789!6.17e-18!18;CL:0002420!6.17e-18!18;CL:0002419!6.17e-18!18;CL:0000790!6.17e-18!18;CL:0002087!2.73e-16!119;CL:0000738!1.23e-15!140;CL:0000084!7.29e-15!25;CL:0000827!7.29e-15!25;CL:0000037!9.68e-13!172;CL:0000566!9.68e-13!172;CL:0000625!8.99e-12!11;CL:0002031!1.23e-11!124;CL:0000988!1.24e-11!182;CL:0002032!4.33e-11!165;CL:0000837!4.33e-11!165;CL:0000624!4.55e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.16e-39;18!CL:0000789;4.16e-39;18!CL:0002419;4.16e-39;18!CL:0000084;8.56e-30;25!CL:0000625;7.16e-25;11!CL:0000624;3.59e-14;6!CL:0000542;5.69e-14;53!CL:0000226;5.56e-08;3!CL:0000842;5.56e-08;3!CL:0000898;6.02e-08;3!CL:0000623;7.65e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.33e-39,18;CL:0000789,4.33e-39,18;CL:0002420,4.33e-39,18;CL:0002419,4.33e-39,18;CL:0000790,4.33e-39,18;CL:0000084,9.27e-30,25;CL:0000827,9.27e-30,25;CL:0000838,1.03e-26,52;CL:0000542,4.76e-26,53;CL:0000051,4.76e-26,53;CL:0000625,6.49e-25,11;CL:0002087,5.56e-15,115;CL:0000738,9.33e-15,136;CL:0000624,3.68e-14,6;CL:0000037,4.64e-13,168;CL:0000988,1.46e-12,177;CL:0002032,2.35e-11,161;CL:0000837,2.35e-11,161;CL:0002031,6.86e-11,120;CL:0000226,5.44e-08,3;CL:0000842,5.44e-08,3;CL:0000898,6.10e-08,3;CL:0000623,7.65e-08,3;CL:0000825,7.65e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.16e-39;18!CL:0000051;5.69e-14;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.01e-16!115;UBERON:0000178!4.98e-10!15;UBERON:0000179!4.98e-10!15;UBERON:0000463!4.98e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.29e-20;15!UBERON:0000179;2.29e-20;15!UBERON:0000463;2.29e-20;15!UBERON:0002390;6.58e-15;32!UBERON:0002193;2.69e-10;42!UBERON:0004177;8.40e-07;5!UBERON:0005057;8.40e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.28e-20,15;UBERON:0000179,2.28e-20,15;UBERON:0000463,2.28e-20,15;UBERON:0004177,2.91e-10,7;UBERON:0005057,2.91e-10,7;UBERON:0002370,6.94e-09,4;UBERON:0005058,6.94e-09,4;UBERON:0009113,6.94e-09,4;UBERON:0003295,6.94e-09,4;UBERON:0005562,6.94e-09,4 | |||
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| |||
|short_description=p5@ARHGEF1 | |||
}} |
Revision as of 20:52, 11 September 2013
Short description: | p5@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_ARHGEF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_AB590439, DQ893592, DQ895004, EU832644, EU832721_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.33e-39 | 18 |
alpha-beta T cell | 4.33e-39 | 18 |
immature T cell | 4.33e-39 | 18 |
mature T cell | 4.33e-39 | 18 |
immature alpha-beta T cell | 4.33e-39 | 18 |
T cell | 9.27e-30 | 25 |
pro-T cell | 9.27e-30 | 25 |
lymphoid lineage restricted progenitor cell | 1.03e-26 | 52 |
lymphocyte | 4.76e-26 | 53 |
common lymphoid progenitor | 4.76e-26 | 53 |
CD8-positive, alpha-beta T cell | 6.49e-25 | 11 |
nongranular leukocyte | 5.56e-15 | 115 |
leukocyte | 9.33e-15 | 136 |
CD4-positive, alpha-beta T cell | 3.68e-14 | 6 |
hematopoietic stem cell | 4.64e-13 | 168 |
hematopoietic cell | 1.46e-12 | 177 |
hematopoietic oligopotent progenitor cell | 2.35e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.35e-11 | 161 |
hematopoietic lineage restricted progenitor cell | 6.86e-11 | 120 |
single nucleate cell | 5.44e-08 | 3 |
mononuclear cell | 5.44e-08 | 3 |
naive T cell | 6.10e-08 | 3 |
natural killer cell | 7.65e-08 | 3 |
pro-NK cell | 7.65e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 2.28e-20 | 15 |
haemolymphatic fluid | 2.28e-20 | 15 |
organism substance | 2.28e-20 | 15 |
hemopoietic organ | 2.91e-10 | 7 |
immune organ | 2.91e-10 | 7 |
thymus | 6.94e-09 | 4 |
hemolymphoid system gland | 6.94e-09 | 4 |
thymic region | 6.94e-09 | 4 |
pharyngeal gland | 6.94e-09 | 4 |
thymus primordium | 6.94e-09 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.