FFCP PHASE1:Hg19::chr2:33172221..33172238,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4052|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6714|TSSclassifier=S|UniProt=Q14766|association_with_transcript=-130bp_to_ENST00000354476,NM_206943_5end|description=CAGE_peak_10_at_LTBP1_5end|id=chr2:33172221..33172238,+|ontology_enrichment_celltype=CL:0002319!7.13e-07!25|ontology_enrichment_celltype_v019=CL:0000349;9.81e-19;19!CL:0002541;2.03e-09;3!CL:0002577;3.29e-09;3!CL:0002322;2.00e-08;5!CL:0000047;3.41e-07;2!CL:0002319;9.47e-07;25|ontology_enrichment_celltype_v019_2=CL:0000349,3.43e-19,19;CL:0002541,9.89e-10,3;CL:0002577,2.50e-09,3;CL:0000047,1.15e-08,8;CL:0002322,4.17e-08,5;CL:0002536,8.13e-07,2;CL:0002319,8.78e-07,25|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!2.50e-10!659;UBERON:0005631!8.58e-10!14;UBERON:0000158!8.58e-10!14;UBERON:0000478!7.62e-08!24;UBERON:0004923!8.23e-08!57;UBERON:0003124!3.69e-07!7;UBERON:0000467!3.71e-07!625;UBERON:0000480!4.87e-07!626|ontology_enrichment_uberon_v019=UBERON:0005631;4.72e-17;10!UBERON:0000158;4.72e-17;10!UBERON:0000478;6.89e-17;24!UBERON:0001987;8.27e-12;4!UBERON:0000305;6.96e-10;7!UBERON:0003124;2.03e-09;3!UBERON:0000920;2.03e-09;3|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.74e-27,14;UBERON:0000158,1.74e-27,14;UBERON:0003124,7.56e-20,7;UBERON:0000478,3.16e-17,24;UBERON:0001987,7.76e-12,4;UBERON:0004340,7.76e-12,4;UBERON:0005795,1.52e-10,22;UBERON:0000305,3.50e-10,7;UBERON:0000920,9.89e-10,3;UBERON:0004871,7.48e-09,8;UBERON:0000995,7.49e-09,21;UBERON:0003975,2.27e-08,22;UBERON:0005156,1.36e-07,59;UBERON:0000990,1.36e-07,59;UBERON:0004175,3.68e-07,25|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,1.74753097704138,3.16520373874144,0.37129905888014,0,0,0,0.730310090387373,0,0.61560529038394,0,2.5076377718247,6.01095572975219,0.684372125364421,1.75759695432724,0,0,0,0.393364276848904,0,0,0,0.30120591877825,0,0.697204805222715,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.283604451492204,0.443458794925128,0.175669571386252,0.261958150995425,0.364295288292542,0,0,0,0,0,0,0,0.198762407366705,0,0,1.13061588384802,0.419499436209906,0.825354125820202,0,0.775250277507987,1.42306505074684,1.00416183829401,0,0,0.488124115096339,0,0.81014194788176,0.17859945656816,0.22452937262617,0.337834441449967,1.53316637465883,0,0.183201743930407,0,0,0.436094052142534,0,0.12663051166458,0.397227542439656,0.860509862246441,0,0,1.06748995729705,0.49333509683432,0.311211035399766,0.67355336034844,0,0.605429710579726,0,0.70296429550139,0,0,0.448346041655403,0.117434498643765,0.809364721840658,0.98315564691574,0,0.859840221182376,0.206651562351531,0,0.247266929278557,0.910161361938026,0,1.0100166837244,0.625592599359821,0,0,0,0,0.113432183160021,0.179389635688862,0.213557388818567,0,0.600182192168805,0.309157587715317,0.257640540045629,0.558350568994769,0.168776332241266,0,0.252433774244115,0.368199594569197,0.161646056818812,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0.487894824518382,1.19276791489337,1.04574548582567,1.55491582523056,1.00928340350251,2.18986415445498,3.12899064659632,0.643240938192885,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,2.21446636387394,0,0,0,0,0,0,0,0.368965315629341,0.514703430895577,0.329250856225877,0,0,0.0925884451585296,0,0,0,1.04337364477569,1.40890433082986,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0.43596006883328,0.51336800074665,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,0.791951872933429,0.301439377059586,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0,0,0,0,0,0,0,6.86055485400651,3.90419561572865,0,2.84777651068393,1.27587750330633,0,0,0,0,0,0.542530047399471,0,0,0.157702415033935,1.28855556491985,0,0,0,0,0,0.347534457872331,0.783204629850962,0.686286847621712,0,0,0,2.12189300012382,1.66435439510497,3.0239029332968,0,0,0.280660094433074,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,2.07701771673448,0,1.20859449591622,1.00253235151642,0,0.229628896329213,0.910455840033585,0.393373244878272,0,0.462092022626489,0.784349769176855,0,0.527758144464379,0,0.340187410553031,1.0795795805107,1.54227252690289,1.35473218771926,0.501689773854853,0.254876273045038,0,0.447749509444357,0.657779629937804,0.261435451024901,0,0,0.650756789328606,0.9273691048295,0.0915694648183434,0.330037999682352,0,0,0,0.48335359146061,0.154048617114644,0.15350367472613,0,0,0.145016693914229,0,0,0.330569830721956,0.768760269460425,0,0.809262246844399,0.464845549297286,5.03699754929024,0,0,0,0.869932992075073,0,0.143124886741991,0.372158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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4052 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6714 | |||
|TSSclassifier=S | |||
|UniProt=Q14766 | |||
|association_with_transcript=-130bp_to_ENST00000354476,NM_206943_5end | |||
|description=CAGE_peak_10_at_LTBP1_5end | |||
|id=chr2:33172221..33172238,+ | |||
|ontology_enrichment_celltype=CL:0002319!7.13e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000349;9.81e-19;19!CL:0002541;2.03e-09;3!CL:0002577;3.29e-09;3!CL:0002322;2.00e-08;5!CL:0000047;3.41e-07;2!CL:0002319;9.47e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.43e-19,19;CL:0002541,9.89e-10,3;CL:0002577,2.50e-09,3;CL:0000047,1.15e-08,8;CL:0002322,4.17e-08,5;CL:0002536,8.13e-07,2;CL:0002319,8.78e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.50e-10!659;UBERON:0005631!8.58e-10!14;UBERON:0000158!8.58e-10!14;UBERON:0000478!7.62e-08!24;UBERON:0004923!8.23e-08!57;UBERON:0003124!3.69e-07!7;UBERON:0000467!3.71e-07!625;UBERON:0000480!4.87e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.72e-17;10!UBERON:0000158;4.72e-17;10!UBERON:0000478;6.89e-17;24!UBERON:0001987;8.27e-12;4!UBERON:0000305;6.96e-10;7!UBERON:0003124;2.03e-09;3!UBERON:0000920;2.03e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.74e-27,14;UBERON:0000158,1.74e-27,14;UBERON:0003124,7.56e-20,7;UBERON:0000478,3.16e-17,24;UBERON:0001987,7.76e-12,4;UBERON:0004340,7.76e-12,4;UBERON:0005795,1.52e-10,22;UBERON:0000305,3.50e-10,7;UBERON:0000920,9.89e-10,3;UBERON:0004871,7.48e-09,8;UBERON:0000995,7.49e-09,21;UBERON:0003975,2.27e-08,22;UBERON:0005156,1.36e-07,59;UBERON:0000990,1.36e-07,59;UBERON:0004175,3.68e-07,25 | |||
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| |||
|short_description=p10@LTBP1 | |||
}} |
Revision as of 18:21, 12 September 2013
Short description: | p10@LTBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_LTBP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -130bp_to_ENST00000354476, NM_206943_5end |
EntrezGene: | LTBP1 |
HGNC: | 6714 |
UniProt: | Q14766 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.43e-19 | 19 |
chorionic membrane mesenchymal stem cell | 9.89e-10 | 3 |
placental epithelial cell | 2.50e-09 | 3 |
neuronal stem cell | 1.15e-08 | 8 |
embryonic stem cell | 4.17e-08 | 5 |
amniotic epithelial cell | 8.13e-07 | 2 |
neural cell | 8.78e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.74e-27 | 14 |
membranous layer | 1.74e-27 | 14 |
chorion | 7.56e-20 | 7 |
extraembryonic structure | 3.16e-17 | 24 |
placenta | 7.76e-12 | 4 |
allantois | 7.76e-12 | 4 |
embryonic uterus | 1.52e-10 | 22 |
amnion | 3.50e-10 | 7 |
egg chorion | 9.89e-10 | 3 |
somatic layer of lateral plate mesoderm | 7.48e-09 | 8 |
uterus | 7.49e-09 | 21 |
internal female genitalia | 2.27e-08 | 22 |
reproductive structure | 1.36e-07 | 59 |
reproductive system | 1.36e-07 | 59 |
internal genitalia | 3.68e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.