FFCP PHASE1:Hg19::chr20:6749078..6749089,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=650|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=1069|TSSclassifier=S|UniProt=C8C060,P12643|association_with_transcript=333bp_to_NM_001200,uc002wmu.1_5end|description=CAGE_peak_9_at_BMP2_5end|id=chr20:6749078..6749089,+|ontology_enrichment_celltype=CL:0000569!6.35e-07!4;CL:0000011!6.35e-07!4|ontology_enrichment_celltype_v019=CL:0000511;4.27e-34;1!CL:0002625;4.27e-34;1!CL:0000216;4.27e-34;1!CL:0000077;2.21e-16;19!CL:0002144;2.45e-12;3!CL:0000213;5.03e-08;58!CL:0000215;5.03e-08;58!CL:0002595;6.33e-08;5!CL:0000154;8.25e-07;6!CL:0000138;8.25e-07;6|ontology_enrichment_celltype_v019_2=CL:0000511,1.84e-34,1;CL:0002625,1.84e-34,1;CL:0000216,1.84e-34,1;CL:0000077,2.27e-16,19;CL:0002144,2.31e-12,3;CL:0000213,1.11e-09,58;CL:0000215,1.11e-09,58;CL:0000076,5.93e-09,63;CL:0002595,7.01e-08,5;CL:0000222,3.03e-07,121;CL:0000154,7.17e-07,6;CL:0000058,7.58e-07,6;CL:0000138,7.58e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001737!1.91e-14!9;UBERON:0004872!4.68e-13!84;UBERON:0001637!8.23e-12!42;UBERON:0003509!8.23e-12!42;UBERON:0004572!8.23e-12!42;UBERON:0004573!1.00e-11!33;UBERON:0004571!1.00e-11!33;UBERON:0001981!1.32e-11!60;UBERON:0007500!1.32e-11!60;UBERON:0004537!1.32e-11!60;UBERON:0006965!1.32e-11!60;UBERON:0000477!1.37e-11!286;UBERON:0000055!3.97e-11!69;UBERON:0004535!9.32e-11!110;UBERON:0003914!3.20e-10!118;UBERON:0001009!3.30e-10!113;UBERON:0008947!1.00e-09!38;UBERON:0003258!1.00e-09!38;UBERON:0002049!1.61e-09!79;UBERON:0007798!1.61e-09!79;UBERON:0004111!8.43e-09!241;UBERON:0000065!3.15e-07!53;UBERON:0000025!3.43e-07!194;UBERON:0001048!4.35e-07!168;UBERON:0001557!5.58e-07!19;UBERON:0004122!8.60e-07!15|ontology_enrichment_uberon_v019=UBERON:0001136;4.27e-34;1!UBERON:0001343;4.27e-34;1!UBERON:0004910;4.27e-34;1!UBERON:0004813;4.27e-34;1!UBERON:0004909;8.34e-18;2!UBERON:0010523;2.45e-12;3!UBERON:0001915;2.45e-12;3!UBERON:0001982;2.45e-12;3!UBERON:0005904;1.38e-09;4!UBERON:0003834;6.33e-08;5!UBERON:0001533;6.33e-08;5!UBERON:0000487;5.40e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.84e-34,1;UBERON:0001343,1.84e-34,1;UBERON:0004910,1.84e-34,1;UBERON:0005154,1.84e-34,1;UBERON:0005295,1.84e-34,1;UBERON:0004813,1.84e-34,1;UBERON:0005297,1.84e-34,1;UBERON:0005294,1.84e-34,1;UBERON:0010141,1.84e-34,1;UBERON:0005891,1.84e-34,1;UBERON:0004909,5.48e-18,2;UBERON:0010523,2.31e-12,3;UBERON:0001915,2.31e-12,3;UBERON:0001982,2.31e-12,3;UBERON:0005904,1.12e-09,4;UBERON:0003834,7.01e-08,5;UBERON:0001533,7.01e-08,5;UBERON:0000487,4.94e-07,22|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0.0821005894499457,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,1.5905718941022,0.973269740605272,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0.275118041940067,0,0,0,0,0.402829317109147,1.52054421143703,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0,0.36497735907583,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.772057809126758,0.435758888184812,0.474541238222193,0.404493924480493,0.196221465125346,0.38474715694639,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50719688529793,0,1.29964888536674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.362578348774867,0,0.184161977871793,0,0.182091168006717,0.262248829918848,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0.6970372701606,0,0,0.869932992075073,0.55597265731176,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0.842516912477962,0,0.731140468893853,0,0.136499911407986,0.141405431953713,0,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32681539055697,0.139423744278603,0,0.341826167541004,0,0,0,0.31900115973192,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.370691816839509,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0.290268993867255,0.292357268344742,0,0,0,0,0,0,0,0,0,0.213452994739353,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.209818352539992,0,0.537862017998534,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0.310874401165561,0.591420599958536,0.159296767163702,0,0.155262956876259,0,0,0.521745061811734,0.450772826991655,0.380805212168795,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0.352675943690684,0.918736432059601,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0,0,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0|short_description=p9@BMP2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1069 | |||
|TSSclassifier=S | |||
|UniProt=C8C060,P12643 | |||
|association_with_transcript=333bp_to_NM_001200,uc002wmu.1_5end | |||
|description=CAGE_peak_9_at_BMP2_5end | |||
|id=chr20:6749078..6749089,+ | |||
|ontology_enrichment_celltype=CL:0000569!6.35e-07!4;CL:0000011!6.35e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000511;4.27e-34;1!CL:0002625;4.27e-34;1!CL:0000216;4.27e-34;1!CL:0000077;2.21e-16;19!CL:0002144;2.45e-12;3!CL:0000213;5.03e-08;58!CL:0000215;5.03e-08;58!CL:0002595;6.33e-08;5!CL:0000154;8.25e-07;6!CL:0000138;8.25e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.84e-34,1;CL:0002625,1.84e-34,1;CL:0000216,1.84e-34,1;CL:0000077,2.27e-16,19;CL:0002144,2.31e-12,3;CL:0000213,1.11e-09,58;CL:0000215,1.11e-09,58;CL:0000076,5.93e-09,63;CL:0002595,7.01e-08,5;CL:0000222,3.03e-07,121;CL:0000154,7.17e-07,6;CL:0000058,7.58e-07,6;CL:0000138,7.58e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!1.91e-14!9;UBERON:0004872!4.68e-13!84;UBERON:0001637!8.23e-12!42;UBERON:0003509!8.23e-12!42;UBERON:0004572!8.23e-12!42;UBERON:0004573!1.00e-11!33;UBERON:0004571!1.00e-11!33;UBERON:0001981!1.32e-11!60;UBERON:0007500!1.32e-11!60;UBERON:0004537!1.32e-11!60;UBERON:0006965!1.32e-11!60;UBERON:0000477!1.37e-11!286;UBERON:0000055!3.97e-11!69;UBERON:0004535!9.32e-11!110;UBERON:0003914!3.20e-10!118;UBERON:0001009!3.30e-10!113;UBERON:0008947!1.00e-09!38;UBERON:0003258!1.00e-09!38;UBERON:0002049!1.61e-09!79;UBERON:0007798!1.61e-09!79;UBERON:0004111!8.43e-09!241;UBERON:0000065!3.15e-07!53;UBERON:0000025!3.43e-07!194;UBERON:0001048!4.35e-07!168;UBERON:0001557!5.58e-07!19;UBERON:0004122!8.60e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;4.27e-34;1!UBERON:0001343;4.27e-34;1!UBERON:0004910;4.27e-34;1!UBERON:0004813;4.27e-34;1!UBERON:0004909;8.34e-18;2!UBERON:0010523;2.45e-12;3!UBERON:0001915;2.45e-12;3!UBERON:0001982;2.45e-12;3!UBERON:0005904;1.38e-09;4!UBERON:0003834;6.33e-08;5!UBERON:0001533;6.33e-08;5!UBERON:0000487;5.40e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.84e-34,1;UBERON:0001343,1.84e-34,1;UBERON:0004910,1.84e-34,1;UBERON:0005154,1.84e-34,1;UBERON:0005295,1.84e-34,1;UBERON:0004813,1.84e-34,1;UBERON:0005297,1.84e-34,1;UBERON:0005294,1.84e-34,1;UBERON:0010141,1.84e-34,1;UBERON:0005891,1.84e-34,1;UBERON:0004909,5.48e-18,2;UBERON:0010523,2.31e-12,3;UBERON:0001915,2.31e-12,3;UBERON:0001982,2.31e-12,3;UBERON:0005904,1.12e-09,4;UBERON:0003834,7.01e-08,5;UBERON:0001533,7.01e-08,5;UBERON:0000487,4.94e-07,22 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0.0821005894499457,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,1.5905718941022,0.973269740605272,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0.275118041940067,0,0,0,0,0.402829317109147,1.52054421143703,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.573673241497627,0.354668382198357,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0,0.36497735907583,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.772057809126758,0.435758888184812,0.474541238222193,0.404493924480493,0.196221465125346,0.38474715694639,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50719688529793,0,1.29964888536674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.362578348774867,0,0.184161977871793,0,0.182091168006717,0.262248829918848,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0.6970372701606,0,0,0.869932992075073,0.55597265731176,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0.842516912477962,0,0.731140468893853,0,0.136499911407986,0.141405431953713,0,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32681539055697,0.139423744278603,0,0.341826167541004,0,0,0,0.31900115973192,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.370691816839509,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0.290268993867255,0.292357268344742,0,0,0,0,0,0,0,0,0,0.213452994739353,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.209818352539992,0,0.537862017998534,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0.310874401165561,0.591420599958536,0.159296767163702,0,0.155262956876259,0,0,0.521745061811734,0.450772826991655,0.380805212168795,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0.352675943690684,0.918736432059601,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0.546974809018219,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0,0,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@BMP2 | |||
}} |
Revision as of 09:42, 12 September 2013
Short description: | p9@BMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_BMP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 333bp_to_NM_001200, uc002wmu.1_5end |
EntrezGene: | BMP2 |
HGNC: | 1069 |
UniProt: | C8C060P12643 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.84e-34 | 1 |
seminiferous tubule epithelial cell | 1.84e-34 | 1 |
Sertoli cell | 1.84e-34 | 1 |
mesothelial cell | 2.27e-16 | 19 |
capillary endothelial cell | 2.31e-12 | 3 |
lining cell | 1.11e-09 | 58 |
barrier cell | 1.11e-09 | 58 |
squamous epithelial cell | 5.93e-09 | 63 |
smooth muscle cell of the subclavian artery | 7.01e-08 | 5 |
mesodermal cell | 3.03e-07 | 121 |
protein secreting cell | 7.17e-07 | 6 |
chondroblast | 7.58e-07 | 6 |
chondrocyte | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 1.84e-34 | 1 |
seminiferous tubule of testis | 1.84e-34 | 1 |
epithelium of male gonad | 1.84e-34 | 1 |
epithelial cord | 1.84e-34 | 1 |
sex cord | 1.84e-34 | 1 |
seminiferous tubule epithelium | 1.84e-34 | 1 |
testis sex cord | 1.84e-34 | 1 |
genital ridge | 1.84e-34 | 1 |
primitive sex cord of indifferent gonad | 1.84e-34 | 1 |
coelomic epithelium | 1.84e-34 | 1 |
epithelium of gonad | 5.48e-18 | 2 |
microcirculatory vessel | 2.31e-12 | 3 |
endothelium of capillary | 2.31e-12 | 3 |
capillary | 2.31e-12 | 3 |
duct of male reproductive system | 1.12e-09 | 4 |
thoracic segment blood vessel | 7.01e-08 | 5 |
subclavian artery | 7.01e-08 | 5 |
simple squamous epithelium | 4.94e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.