FFCP PHASE1:Hg19::chr20:34203794..34203818,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6676|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11214|TSSclassifier=S|UniProt=Q9NPE6|association_with_transcript=0bp_to_ENST00000374273,NM_003116,uc002xdb.1_5end|coexpression_cluster_id=C890|description=CAGE_peak_8_at_SPAG4_5end|id=chr20:34203794..34203818,+|ontology_enrichment_celltype=CL:0000738!4.53e-23!140;CL:0002031!1.12e-16!124;CL:0000037!3.32e-16!172;CL:0000566!3.32e-16!172;CL:0002087!5.26e-15!119;CL:0000988!2.32e-14!182;CL:0000766!2.68e-14!76;CL:0002032!2.37e-13!165;CL:0000837!2.37e-13!165;CL:0002057!9.69e-13!42;CL:0000860!1.75e-12!45;CL:0000839!1.22e-10!70;CL:0000557!2.00e-10!71;CL:0000624!7.36e-10!6;CL:0000791!8.34e-09!18;CL:0000789!8.34e-09!18;CL:0002420!8.34e-09!18;CL:0002419!8.34e-09!18;CL:0000790!8.34e-09!18;CL:0002009!5.98e-08!65;CL:0000763!6.78e-08!112;CL:0000049!6.78e-08!112;CL:0002194!1.39e-07!63;CL:0000576!1.39e-07!63;CL:0000040!1.39e-07!63;CL:0000559!1.39e-07!63;CL:0000094!7.42e-07!8|ontology_enrichment_celltype_v019=CL:0000624;9.61e-16;6!CL:0000791;5.04e-15;18!CL:0000789;5.04e-15;18!CL:0002419;5.04e-15;18!CL:0000815;8.26e-13;2!CL:0000792;8.26e-13;2!CL:0002677;8.26e-13;2!CL:0000097;9.72e-12;5!CL:0000084;1.40e-10;25!CL:0000226;7.87e-09;3!CL:0000898;7.87e-09;3!CL:0000842;7.87e-09;3!CL:0000623;1.33e-08;3!CL:0000542;1.78e-08;53!CL:0002087;7.65e-07;104|ontology_enrichment_celltype_v019_2=CL:0000738,5.52e-18,136;CL:0000624,9.09e-16,6;CL:0000791,5.76e-15,18;CL:0000789,5.76e-15,18;CL:0002420,5.76e-15,18;CL:0002419,5.76e-15,18;CL:0000790,5.76e-15,18;CL:0000838,5.17e-14,52;CL:0000542,1.05e-13,53;CL:0000051,1.05e-13,53;CL:0000037,1.12e-13,168;CL:0002031,1.46e-13,120;CL:0000815,8.03e-13,2;CL:0000792,8.03e-13,2;CL:0002677,8.03e-13,2;CL:0000988,9.55e-13,177;CL:0002087,1.52e-12,115;CL:0000097,8.43e-12,5;CL:0002028,8.43e-12,5;CL:0002032,1.30e-11,161;CL:0000837,1.30e-11,161;CL:0000084,1.53e-10,25;CL:0000827,1.53e-10,25;CL:0000226,6.09e-09,3;CL:0000842,6.09e-09,3;CL:0000898,7.72e-09,3;CL:0000623,1.29e-08,3;CL:0000825,1.29e-08,3;CL:0000163,9.62e-07,9|ontology_enrichment_development_v019=CL:0000790;5.04e-15;18!CL:0000051;1.78e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.73e-09!102;UBERON:0003061!1.73e-09!102;UBERON:0001474!1.43e-08!86;UBERON:0002193!1.99e-08!112;UBERON:0002371!2.31e-08!80|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,1.96682138424452,0.767658796194425,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.868043482863407,0,0,0,0,1.13362783106643,0.485168122375632,0,0,0.619412741790207,0,0,0,1.03423704220986,1.29096936716765,0,0,0,0.898893937780338,0.918251677112708,0.641858054152187,1.91801137739712,0,0,0.426224750532694,0.580418477257168,0.56738522469114,0,0.502497330513487,0,0.434377689410233,0,0.736555271975129,0.632924774881769,0.422510572623884,0,0,0,0.150176892841506,0,0.285012743741249,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,5.12291672198504,5.87237189370939,6.88091810625412,0,0.560508562981536,0,1.37696839079683,0.786021525498329,1.43921049299656,0,2.93330039970231,2.8406868344084,1.94826728407911,0,1.17842362989935,0.664601683750863,0.812411591295047,0,0,0,0,0,2.37258501059297,1.60524496853828,2.09071047609954,0,0.383220493601921,0.34362744548263,2.78321661221453,0,0,0.950452044448374,0.150575119077773,0,0,0,0,1.00803371612366,1.87208137048455,2.31719046212478,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,2.5540919722054,0,0,0,0,0,0.238490624305342,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0,3.7319060797339,2.88239906833923,4.29224273649692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,0.862510299438069,1.41177339907723,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,1.94142780736755,2.66818894508611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0.540031437238115,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494411622680279,0,0,0.552567831062295,0.251932747854276,0,0,0,0,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6676 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11214 | |||
|TSSclassifier=S | |||
|UniProt=Q9NPE6 | |||
|association_with_transcript=0bp_to_ENST00000374273,NM_003116,uc002xdb.1_5end | |||
|coexpression_cluster_id=C890 | |||
|description=CAGE_peak_8_at_SPAG4_5end | |||
|id=chr20:34203794..34203818,+ | |||
|ontology_enrichment_celltype=CL:0000738!4.53e-23!140;CL:0002031!1.12e-16!124;CL:0000037!3.32e-16!172;CL:0000566!3.32e-16!172;CL:0002087!5.26e-15!119;CL:0000988!2.32e-14!182;CL:0000766!2.68e-14!76;CL:0002032!2.37e-13!165;CL:0000837!2.37e-13!165;CL:0002057!9.69e-13!42;CL:0000860!1.75e-12!45;CL:0000839!1.22e-10!70;CL:0000557!2.00e-10!71;CL:0000624!7.36e-10!6;CL:0000791!8.34e-09!18;CL:0000789!8.34e-09!18;CL:0002420!8.34e-09!18;CL:0002419!8.34e-09!18;CL:0000790!8.34e-09!18;CL:0002009!5.98e-08!65;CL:0000763!6.78e-08!112;CL:0000049!6.78e-08!112;CL:0002194!1.39e-07!63;CL:0000576!1.39e-07!63;CL:0000040!1.39e-07!63;CL:0000559!1.39e-07!63;CL:0000094!7.42e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000624;9.61e-16;6!CL:0000791;5.04e-15;18!CL:0000789;5.04e-15;18!CL:0002419;5.04e-15;18!CL:0000815;8.26e-13;2!CL:0000792;8.26e-13;2!CL:0002677;8.26e-13;2!CL:0000097;9.72e-12;5!CL:0000084;1.40e-10;25!CL:0000226;7.87e-09;3!CL:0000898;7.87e-09;3!CL:0000842;7.87e-09;3!CL:0000623;1.33e-08;3!CL:0000542;1.78e-08;53!CL:0002087;7.65e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.52e-18,136;CL:0000624,9.09e-16,6;CL:0000791,5.76e-15,18;CL:0000789,5.76e-15,18;CL:0002420,5.76e-15,18;CL:0002419,5.76e-15,18;CL:0000790,5.76e-15,18;CL:0000838,5.17e-14,52;CL:0000542,1.05e-13,53;CL:0000051,1.05e-13,53;CL:0000037,1.12e-13,168;CL:0002031,1.46e-13,120;CL:0000815,8.03e-13,2;CL:0000792,8.03e-13,2;CL:0002677,8.03e-13,2;CL:0000988,9.55e-13,177;CL:0002087,1.52e-12,115;CL:0000097,8.43e-12,5;CL:0002028,8.43e-12,5;CL:0002032,1.30e-11,161;CL:0000837,1.30e-11,161;CL:0000084,1.53e-10,25;CL:0000827,1.53e-10,25;CL:0000226,6.09e-09,3;CL:0000842,6.09e-09,3;CL:0000898,7.72e-09,3;CL:0000623,1.29e-08,3;CL:0000825,1.29e-08,3;CL:0000163,9.62e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000790;5.04e-15;18!CL:0000051;1.78e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.73e-09!102;UBERON:0003061!1.73e-09!102;UBERON:0001474!1.43e-08!86;UBERON:0002193!1.99e-08!112;UBERON:0002371!2.31e-08!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,1.96682138424452,0.767658796194425,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.868043482863407,0,0,0,0,1.13362783106643,0.485168122375632,0,0,0.619412741790207,0,0,0,1.03423704220986,1.29096936716765,0,0,0,0.898893937780338,0.918251677112708,0.641858054152187,1.91801137739712,0,0,0.426224750532694,0.580418477257168,0.56738522469114,0,0.502497330513487,0,0.434377689410233,0,0.736555271975129,0.632924774881769,0.422510572623884,0,0,0,0.150176892841506,0,0.285012743741249,0,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,5.12291672198504,5.87237189370939,6.88091810625412,0,0.560508562981536,0,1.37696839079683,0.786021525498329,1.43921049299656,0,2.93330039970231,2.8406868344084,1.94826728407911,0,1.17842362989935,0.664601683750863,0.812411591295047,0,0,0,0,0,2.37258501059297,1.60524496853828,2.09071047609954,0,0.383220493601921,0.34362744548263,2.78321661221453,0,0,0.950452044448374,0.150575119077773,0,0,0,0,1.00803371612366,1.87208137048455,2.31719046212478,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,2.5540919722054,0,0,0,0,0,0.238490624305342,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0,3.7319060797339,2.88239906833923,4.29224273649692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,0.862510299438069,1.41177339907723,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,1.94142780736755,2.66818894508611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0.540031437238115,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494411622680279,0,0,0.552567831062295,0.251932747854276,0,0,0,0,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0.60129367765797,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0.0882561266915003,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0.164831716762333,0,0.196854963029498,0,0,0,0,0,0,0.449947783103001,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0.106787412567695,0,0,0,0.197611631897944,0,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0.352675943690684,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.376051641746286,0,0,0.523813388962845,0,0,0,0,0,0.19024743058172,0,0,0,0,0.127762427639595,3.21421101526972,0,0.606965604236632,0.682986574053893,0,0,0,0,0,0,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0.233939463462106,0.994753875806841,0,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0,0,0,0,0.0802413666891683,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,2.57647573942014,6.16317499359211,0,0,0.426467963801962,0,0,0,0,0,0,0,0,0.26940821205835,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@SPAG4 | |||
}} |
Revision as of 08:13, 12 September 2013
Short description: | p8@SPAG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SPAG4_5end |
Coexpression cluster: | C890_CD19_CD4_Peripheral_CD8_Natural_Dendritic_Mast |
Association with transcript: | 0bp_to_ENST00000374273, NM_003116, uc002xdb.1_5end |
EntrezGene: | SPAG4 |
HGNC: | 11214 |
UniProt: | Q9NPE6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.52e-18 | 136 |
CD4-positive, alpha-beta T cell | 9.09e-16 | 6 |
mature alpha-beta T cell | 5.76e-15 | 18 |
alpha-beta T cell | 5.76e-15 | 18 |
immature T cell | 5.76e-15 | 18 |
mature T cell | 5.76e-15 | 18 |
immature alpha-beta T cell | 5.76e-15 | 18 |
lymphoid lineage restricted progenitor cell | 5.17e-14 | 52 |
lymphocyte | 1.05e-13 | 53 |
common lymphoid progenitor | 1.05e-13 | 53 |
hematopoietic stem cell | 1.12e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 1.46e-13 | 120 |
regulatory T cell | 8.03e-13 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.03e-13 | 2 |
naive regulatory T cell | 8.03e-13 | 2 |
hematopoietic cell | 9.55e-13 | 177 |
nongranular leukocyte | 1.52e-12 | 115 |
mast cell | 8.43e-12 | 5 |
basophil mast progenitor cell | 8.43e-12 | 5 |
hematopoietic oligopotent progenitor cell | 1.30e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.30e-11 | 161 |
T cell | 1.53e-10 | 25 |
pro-T cell | 1.53e-10 | 25 |
single nucleate cell | 6.09e-09 | 3 |
mononuclear cell | 6.09e-09 | 3 |
naive T cell | 7.72e-09 | 3 |
natural killer cell | 1.29e-08 | 3 |
pro-NK cell | 1.29e-08 | 3 |
endocrine cell | 9.62e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.