FFCP PHASE1:Hg19::chr20:62372434..62372484,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56731|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15930|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc002ygs.2,uc011abj.1_5end|coexpression_cluster_id=C55|description=CAGE_peak_5_at_SLC2A4RG_5end|id=chr20:62372434..62372484,+|ontology_enrichment_celltype=CL:0000055!4.27e-09!180;CL:0000220!5.93e-09!246;CL:0000183!6.10e-09!59;CL:0002321!1.46e-08!248;CL:0000066!2.81e-08!254;CL:0000187!7.24e-08!54;CL:0000680!7.26e-08!57;CL:0000056!7.26e-08!57;CL:0000355!7.26e-08!57;CL:0000223!3.13e-07!59|ontology_enrichment_celltype_v019=CL:0000182;7.79e-10;12!CL:0000188;3.22e-08;9!CL:1000497;6.58e-07;17!CL:0002518;6.58e-07;17!CL:1000507;7.54e-07;10!CL:1000494;7.54e-07;10|ontology_enrichment_celltype_v019_2=CL:0000182,1.07e-09,12;CL:0000188,1.16e-08,9;CL:1000497,7.58e-07,17;CL:0002518,7.58e-07,17;CL:1000507,8.85e-07,10;CL:1000494,8.85e-07,10|ontology_enrichment_development_v019=UBERON:0009497;4.29e-09;13!UBERON:0004161;8.97e-09;11|ontology_enrichment_disease=DOID:305!7.30e-14!106;DOID:0050687!1.03e-12!143;DOID:162!1.16e-09!235;DOID:14566!1.49e-09!239;DOID:7!5.26e-07!39|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:162,5.40e-10,235;DOID:14566,6.28e-10,239;DOID:305,2.21e-09,106;DOID:0050687,1.20e-08,143|ontology_enrichment_uberon=UBERON:0003104!8.11e-23!238;UBERON:0009142!8.11e-23!238;UBERON:0002100!2.33e-16!216;UBERON:0000481!3.55e-16!347;UBERON:0005256!3.99e-15!143;UBERON:0001007!8.19e-13!155;UBERON:0001555!8.19e-13!155;UBERON:0007026!8.19e-13!155;UBERON:0005177!2.26e-12!107;UBERON:0004119!3.21e-12!169;UBERON:0000925!3.21e-12!169;UBERON:0006595!3.21e-12!169;UBERON:0000077!5.91e-12!130;UBERON:0004921!6.56e-12!129;UBERON:0004185!6.56e-12!129;UBERON:0000475!5.58e-10!365;UBERON:0001041!7.27e-10!98;UBERON:0005172!1.43e-09!55;UBERON:0005173!1.43e-09!55;UBERON:0009569!3.76e-08!113;UBERON:0002417!7.05e-08!61;UBERON:0000916!7.05e-08!61;UBERON:0000490!7.12e-08!138;UBERON:0005911!1.09e-07!82;UBERON:0003929!1.29e-07!54;UBERON:0001048!1.61e-07!168;UBERON:0004290!2.97e-07!70;UBERON:0000914!4.10e-07!83;UBERON:0002329!4.10e-07!83;UBERON:0003077!4.10e-07!83;UBERON:0003059!4.10e-07!83;UBERON:0007282!4.10e-07!83;UBERON:0009618!4.10e-07!83;UBERON:0007285!4.10e-07!83;UBERON:0001737!4.49e-07!9;UBERON:0008947!7.22e-07!38;UBERON:0003258!7.22e-07!38|ontology_enrichment_uberon_v019=UBERON:0001737;1.87e-12;9!UBERON:0001557;1.87e-12;9!UBERON:0002107;7.51e-10;19!UBERON:0006925;7.51e-10;19!UBERON:0005172;1.95e-08;52!UBERON:0005173;1.95e-08;52!UBERON:0002423;4.76e-08;25!UBERON:0004211;7.54e-07;10!UBERON:0009773;7.54e-07;10!UBERON:0001231;7.54e-07;10!UBERON:0004810;7.54e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0003104,6.77e-14,160;UBERON:0009142,6.77e-14,160;UBERON:0001737,9.16e-13,9;UBERON:0005172,5.81e-10,54;UBERON:0005173,5.81e-10,54;UBERON:0002107,1.06e-09,19;UBERON:0006925,1.06e-09,19;UBERON:0008836,1.06e-09,19;UBERON:0008835,1.61e-09,22;UBERON:0003894,1.61e-09,22;UBERON:0005256,2.32e-09,122;UBERON:0009854,6.06e-09,23;UBERON:0002417,2.78e-08,60;UBERON:0000916,2.78e-08,60;UBERON:0002100,4.21e-08,199;UBERON:0007499,6.17e-08,25;UBERON:0009497,6.17e-08,25;UBERON:0000015,6.17e-08,25;UBERON:0002423,6.17e-08,25;UBERON:0006235,6.17e-08,25;UBERON:0004161,6.17e-08,25;UBERON:0009856,1.71e-07,26;UBERON:0001041,2.43e-07,87;UBERON:0005177,5.84e-07,101;UBERON:0004921,6.83e-07,118;UBERON:0004810,8.85e-07,10|phase1_expression=0,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0,2.35067065379855,0,0.697801167972428,0,0,1.98026164736075,0.994192127183747,1.34465029290355,0,0,0.487932798790507,0.738726348460727,0.408001382488506,0.626909442956176,0.286235987131057,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0.205601498999509,0,0,0,0,0,0,0.443067789167242,0,0,0,0.164437904603676,0,0,0,0.267540828089713,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,1.15076305659177,0.361439152384566,0.50133791063589,1.01392563272577,0,0.486634870302636,0.378139268656271,0.221729397462564,0.43917392846563,19.122945022666,0,1.11235332835329,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0,0.529636723252875,0.573673241497627,0,1.68203280042692,2.1349799145941,0.49333509683432,1.8672662123986,0.134710672069688,0.326923806226917,1.96764655938411,0.576175924479999,1.64025002283658,0.312160076830321,0.570471821544449,0.149448680551801,0.23486899728753,0.161872944368132,0.561803226808994,0.408308342509787,0.491337269247072,0.516628905878827,0,0.494533858557114,1.82032272387605,0.718618141816238,0.168336113954066,0.500474079487857,0.277064115484183,0.438977620880838,0,0.300476117813194,0.113432183160021,0.179389635688862,0.213557388818567,1.05965950579781,0,0.92747276314595,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56731 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15930 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002ygs.2,uc011abj.1_5end | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_5_at_SLC2A4RG_5end | |||
|id=chr20:62372434..62372484,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.27e-09!180;CL:0000220!5.93e-09!246;CL:0000183!6.10e-09!59;CL:0002321!1.46e-08!248;CL:0000066!2.81e-08!254;CL:0000187!7.24e-08!54;CL:0000680!7.26e-08!57;CL:0000056!7.26e-08!57;CL:0000355!7.26e-08!57;CL:0000223!3.13e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;7.79e-10;12!CL:0000188;3.22e-08;9!CL:1000497;6.58e-07;17!CL:0002518;6.58e-07;17!CL:1000507;7.54e-07;10!CL:1000494;7.54e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.07e-09,12;CL:0000188,1.16e-08,9;CL:1000497,7.58e-07,17;CL:0002518,7.58e-07,17;CL:1000507,8.85e-07,10;CL:1000494,8.85e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.29e-09;13!UBERON:0004161;8.97e-09;11 | |||
|ontology_enrichment_disease=DOID:305!7.30e-14!106;DOID:0050687!1.03e-12!143;DOID:162!1.16e-09!235;DOID:14566!1.49e-09!239;DOID:7!5.26e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.40e-10,235;DOID:14566,6.28e-10,239;DOID:305,2.21e-09,106;DOID:0050687,1.20e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!8.11e-23!238;UBERON:0009142!8.11e-23!238;UBERON:0002100!2.33e-16!216;UBERON:0000481!3.55e-16!347;UBERON:0005256!3.99e-15!143;UBERON:0001007!8.19e-13!155;UBERON:0001555!8.19e-13!155;UBERON:0007026!8.19e-13!155;UBERON:0005177!2.26e-12!107;UBERON:0004119!3.21e-12!169;UBERON:0000925!3.21e-12!169;UBERON:0006595!3.21e-12!169;UBERON:0000077!5.91e-12!130;UBERON:0004921!6.56e-12!129;UBERON:0004185!6.56e-12!129;UBERON:0000475!5.58e-10!365;UBERON:0001041!7.27e-10!98;UBERON:0005172!1.43e-09!55;UBERON:0005173!1.43e-09!55;UBERON:0009569!3.76e-08!113;UBERON:0002417!7.05e-08!61;UBERON:0000916!7.05e-08!61;UBERON:0000490!7.12e-08!138;UBERON:0005911!1.09e-07!82;UBERON:0003929!1.29e-07!54;UBERON:0001048!1.61e-07!168;UBERON:0004290!2.97e-07!70;UBERON:0000914!4.10e-07!83;UBERON:0002329!4.10e-07!83;UBERON:0003077!4.10e-07!83;UBERON:0003059!4.10e-07!83;UBERON:0007282!4.10e-07!83;UBERON:0009618!4.10e-07!83;UBERON:0007285!4.10e-07!83;UBERON:0001737!4.49e-07!9;UBERON:0008947!7.22e-07!38;UBERON:0003258!7.22e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.87e-12;9!UBERON:0001557;1.87e-12;9!UBERON:0002107;7.51e-10;19!UBERON:0006925;7.51e-10;19!UBERON:0005172;1.95e-08;52!UBERON:0005173;1.95e-08;52!UBERON:0002423;4.76e-08;25!UBERON:0004211;7.54e-07;10!UBERON:0009773;7.54e-07;10!UBERON:0001231;7.54e-07;10!UBERON:0004810;7.54e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,6.77e-14,160;UBERON:0009142,6.77e-14,160;UBERON:0001737,9.16e-13,9;UBERON:0005172,5.81e-10,54;UBERON:0005173,5.81e-10,54;UBERON:0002107,1.06e-09,19;UBERON:0006925,1.06e-09,19;UBERON:0008836,1.06e-09,19;UBERON:0008835,1.61e-09,22;UBERON:0003894,1.61e-09,22;UBERON:0005256,2.32e-09,122;UBERON:0009854,6.06e-09,23;UBERON:0002417,2.78e-08,60;UBERON:0000916,2.78e-08,60;UBERON:0002100,4.21e-08,199;UBERON:0007499,6.17e-08,25;UBERON:0009497,6.17e-08,25;UBERON:0000015,6.17e-08,25;UBERON:0002423,6.17e-08,25;UBERON:0006235,6.17e-08,25;UBERON:0004161,6.17e-08,25;UBERON:0009856,1.71e-07,26;UBERON:0001041,2.43e-07,87;UBERON:0005177,5.84e-07,101;UBERON:0004921,6.83e-07,118;UBERON:0004810,8.85e-07,10 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,0,0.446961094427288,0,0,0,2.35067065379855,0,0.697801167972428,0,0,1.98026164736075,0.994192127183747,1.34465029290355,0,0,0.487932798790507,0.738726348460727,0.408001382488506,0.626909442956176,0.286235987131057,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0.205601498999509,0,0,0,0,0,0,0.443067789167242,0,0,0,0.164437904603676,0,0,0,0.267540828089713,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,1.15076305659177,0.361439152384566,0.50133791063589,1.01392563272577,0,0.486634870302636,0.378139268656271,0.221729397462564,0.43917392846563,19.122945022666,0,1.11235332835329,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0,0.529636723252875,0.573673241497627,0,1.68203280042692,2.1349799145941,0.49333509683432,1.8672662123986,0.134710672069688,0.326923806226917,1.96764655938411,0.576175924479999,1.64025002283658,0.312160076830321,0.570471821544449,0.149448680551801,0.23486899728753,0.161872944368132,0.561803226808994,0.408308342509787,0.491337269247072,0.516628905878827,0,0.494533858557114,1.82032272387605,0.718618141816238,0.168336113954066,0.500474079487857,0.277064115484183,0.438977620880838,0,0.300476117813194,0.113432183160021,0.179389635688862,0.213557388818567,1.05965950579781,0,0.92747276314595,0.772921620136887,0.37223371266318,0,0.68205903612839,0,0.736399189138395,0.323292113637624,0.710019185033229,0.10075209822764,1.01736355386293,0,0.272746120590835,0.286804595389004,0,0,0.232387885739037,0,0,0,1.56449532329816,1.28648187638577,0,0,0,4.14073800139454,2.69735504124963,2.6511213287183,2.31617342738027,3.92182999366331,1.89816495288877,3.91010793664477,3.53198637225623,4.61696588335668,0,0,1.2347220339942,0,26.6185573125845,3.9313088667105,3.54473944008842,0,9.83907508344908,0.686271241194102,0.548751427043128,1.1240175325762,0.201057944823262,0.370353780634118,1.62904152655162,1.03993478527958,0,0,0.352226082707465,0.433099343283221,0.462985512576611,0.570762456703795,0,0.858486162094873,0,0,0.148631162288728,0,0,0.567100388969546,0.179117045405697,0.871901815541886,0.383382679165211,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0,0,0,0.897048674762886,0.43596006883328,0.7333828582095,0.129271715757778,0,0.845302752556,0.531876233169741,0,0.771622122786426,2.83698264046557,1.0656887160644,0.714889968290738,3.25572963234866,4.11620168390384,0,0.355391948742546,2.37585561880029,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0.410952645100767,1.07436577943937,0.112085143993527,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0.981531933753119,1.50051156317903,0.542530047399471,0,0,0.473107245101804,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0,0.521301686808497,2.54541504701563,0.686286847621712,0,0,0,0.303127571446259,0,0.907170879989041,0,0.306923946576125,0,0,0,0,0,0.154209693802656,0.177561725313127,0.328508624055237,1.03850885836724,0.348631135379878,14.2614150518114,0.601519410909855,0.0920809889358963,0.574072240823034,0.546273504020151,1.04899531967539,0,0.308061348417659,6.27479815341484,2.92278449306521,0.633309773357254,0,0,0,1.54227252690289,2.16757150035082,4.01351819083883,2.29388645740534,3.3243040357149,3.1342465661105,0,0,0,0.328014645699706,0.976135183992909,43.8954709619297,0.27470839445503,0.495056999523528,0,0,0,1.83674364755032,1.84858340537573,3.07007349452259,1.37836572484531,2.57808587683857,2.61030049045611,1.61930592090592,1.78064071293475,0.826424576804891,0.192190067365106,0,0.6069466851333,0.464845549297286,0.31481234683064,0,0.308033580176089,1.06461206063404,0.869932992075073,0.37064843820784,0.143124886741991,0.744316738719335,0,0.38126038784765,1.27948895655667,0.42793898803392,0.636406495851874,1.56989728039846,1.61885211824983,0.823611089208164,2.00281083987667,0.808729926293264,0,0.421258456238981,2.92580243453754,0.731140468893853,0,0.136499911407986,0.989838023675989,1.13008116620243,0,1.99031692572366,0.438450885253763,3.47265320560013,1.31178950409327,0.202910376962704,0.6196469961995,0.281695602532241,0.573645408816206,1.27723753317057,0.35667105148125,1.06428319221179,1.26664581178598,0,0.75894634753143,2.0996083214699,0.0962221127255121,0.670302275535787,0,46.036318579845,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0.962479855263359,0.245040215981032,0,0,0.0711418433484141,0,4.19116680008915,0,0.211673582723883,1.62310970137278,0.280797178113459,0.912938716132769,6.11051593514791,5.01268954180134,0.50787533340481,1.2847046008296,3.02699560786571,2.55507742614196,1.71752672377882,6.45205605047762,4.69719826574073,5.17232339306916,5.66625476665917,0,0,0,0,0,1.30998378285754,0.293016358543788,0,0,0,0.23874448473769,0,0,0,0,0.222617410045812,0.329607748453519,0.211125408127993,0,0,5.79445320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| |||
|short_description=p5@SLC2A4RG | |||
}} |
Revision as of 09:38, 12 September 2013
Short description: | p5@SLC2A4RG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_SLC2A4RG_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 0bp_to_uc002ygs.2, uc011abj.1_5end |
EntrezGene: | SLC2A4RG |
HGNC: | 15930 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.07e-09 | 12 |
cell of skeletal muscle | 1.16e-08 | 9 |
kidney cell | 7.58e-07 | 17 |
kidney epithelial cell | 7.58e-07 | 17 |
kidney tubule cell | 8.85e-07 | 10 |
nephron tubule epithelial cell | 8.85e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 6.77e-14 | 160 |
entire embryonic mesenchyme | 6.77e-14 | 160 |
larynx | 9.16e-13 | 9 |
abdomen element | 5.81e-10 | 54 |
abdominal segment element | 5.81e-10 | 54 |
liver | 1.06e-09 | 19 |
digestive gland | 1.06e-09 | 19 |
liver bud | 1.06e-09 | 19 |
hepatic diverticulum | 1.61e-09 | 22 |
liver primordium | 1.61e-09 | 22 |
trunk mesenchyme | 2.32e-09 | 122 |
digestive tract diverticulum | 6.06e-09 | 23 |
abdominal segment of trunk | 2.78e-08 | 60 |
abdomen | 2.78e-08 | 60 |
trunk | 4.21e-08 | 199 |
epithelial sac | 6.17e-08 | 25 |
epithelium of foregut-midgut junction | 6.17e-08 | 25 |
anatomical boundary | 6.17e-08 | 25 |
hepatobiliary system | 6.17e-08 | 25 |
foregut-midgut junction | 6.17e-08 | 25 |
septum transversum | 6.17e-08 | 25 |
sac | 1.71e-07 | 26 |
foregut | 2.43e-07 | 87 |
trunk region element | 5.84e-07 | 101 |
subdivision of digestive tract | 6.83e-07 | 118 |
nephron tubule epithelium | 8.85e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.40e-10 | 235 |
disease of cellular proliferation | 6.28e-10 | 239 |
carcinoma | 2.21e-09 | 106 |
cell type cancer | 1.20e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.