FFCP PHASE1:Hg19::chr6:21597431..21597447,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6659|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=11200|TSSclassifier=N|UniProt=|association_with_transcript=-213bp_to_AJ420500_5end|coexpression_cluster_id=C1086|description=CAGE_peak_8_at_SOX4_5end|id=chr6:21597431..21597447,+|ontology_enrichment_celltype=CL:0000066!3.47e-20!254;CL:0002321!2.59e-08!248;CL:0000220!5.48e-08!246|ontology_enrichment_celltype_v019=CL:0000540;3.44e-08;6!CL:0000404;3.44e-08;6!CL:1000449;3.56e-07;15!CL:1000497;3.79e-07;17!CL:0002518;3.79e-07;17|ontology_enrichment_celltype_v019_2=CL:0000066,7.37e-14,253;CL:0000540,2.26e-08,6;CL:0000031,2.26e-08,6;CL:0000404,2.26e-08,6;CL:1000497,1.79e-07,17;CL:0002518,1.79e-07,17;CL:1000449,2.27e-07,15|ontology_enrichment_development_v019=CL:0000031;3.44e-08;6|ontology_enrichment_disease=DOID:14566!4.14e-12!239;DOID:162!5.08e-12!235;DOID:0050687!4.66e-08!143;DOID:305!8.14e-08!106;DOID:0050686!3.18e-07!137|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:14566,7.20e-07,239|ontology_enrichment_uberon=UBERON:0006554!5.68e-08!44;UBERON:0001008!1.91e-07!45|ontology_enrichment_uberon_v019=UBERON:0006554;5.80e-09;30!UBERON:0001008;5.80e-09;30!UBERON:0006555;3.56e-07;15!UBERON:0004819;3.56e-07;15!UBERON:0001285;3.56e-07;15!UBERON:0007684;3.56e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.27e-07,15;UBERON:0009773,2.27e-07,15;UBERON:0001231,2.27e-07,15;UBERON:0001285,2.27e-07,15;UBERON:0007684,2.27e-07,15;UBERON:0004208,2.27e-07,15;UBERON:0000353,8.51e-07,15;UBERON:0006555,9.88e-07,16;UBERON:0004819,9.88e-07,16|phase1_expression=1.99846217197612,0.856402095563933,0.704772020479856,0,0,0,0,0,0.522371256399677,0.982935746006035,0.697801167972428,0.436882744260345,0.263766978228454,0.495065411840187,0.662794751455832,2.6893005858071,1.80808358407193,1.46062018077475,3.90346239032406,0,0.408001382488506,1.25381888591235,0.572471974262113,0.136874425072884,0.87879847716362,0.458480434487708,0.328402357799783,0.157421562627358,0,0,0.309632246632152,0,0,0.369754010166788,0.232401601740905,0.284338464974843,1.76160263600908,0,0.200544447470142,0,0,0,0,0,0,0.485168122375632,0.232429036905685,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0.368277635987565,0,0.422510572623884,0.212604299965044,0.419317291016752,0.112328631146495,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,0.560508562981536,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,3.35350429851818,0.383587685530591,1.0843174571537,0.50133791063589,1.44846518960824,0,0.486634870302636,1.22895262313288,2.21729397462564,0.614843499851882,0.130979075497713,0.364295288292542,0.370784442784429,0,0,1.19662164466979,0.715471872916026,2.28797964312051,0,1.39133685156694,0,0.347140501607594,0.56530794192401,0.838998872419812,2.47606237746061,0.626984899610432,1.03366703667732,0.71153252537342,0.66944122552934,2.01414658554573,0.760272105718513,1.70843440283719,0.735326160691737,1.62028389576352,0.446498641420399,0,0.450445921933289,0,0,1.46561395144326,0,0,1.3082821564276,0,0.12663051166458,0.397227542439656,0.286836620748814,0.709336764396714,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0.326923806226917,0,0,0,0,0,0.298897361103602,0,0,0,0,0.245668634623536,0,0,0.247266929278557,0,0,0.336672227908132,0.250237039743928,0,0.438977620880838,0.30648779579902,0.300476117813194,0.680593098960126,0,0.640672166455702,0.211931901159562,0,0.103052529238439,0,0.558350568994769,0.168776332241266,0.194874010322397,0,0.460249493211497,0.323292113637624,0,0,0.508681776931463,1.54608682530637,1.90922284413584,0.286804595389004,2.07355300420312,0.530119073285941,2.32387885739037,1.45125477021519,2.01856680700503,0.72995471815166,0,0,0,0.464367928031979,0,1.30137480043828,0.674338760312407,0.723033089650446,1.10293972732394,0.435758888184812,0.949082476444386,0.404493924480493,0.588664395376038,0.769494313892781,0,1.40241773803446,1.6462960453256,1.47008711385542,0,0,0,5.29755719297581,1.10689594688802,0.686271241194102,1.09750285408626,0,0.402115889646523,0.555530670951178,0,0,2.88662684050547,2.20267769452646,0.70445216541493,1.29929802984966,4.1668696131895,3.61482889245737,0.790204397959275,0.858486162094873,0,0.234004265139238,0.445893486866185,0,1.00789276919316,0.141775097242386,0.179117045405697,0,0.383382679165211,0,2.0251139823042,0.414656231081544,1.00883967391873,0.25248486685276,0.507983154337352,0.381988425558278,2.34434894420094,0,0.308482478109971,0.300343057843917,0.857479297891735,0.112131084345361,0,0,0.646358578788889,0,0,1.32969058292435,2.08014873822732,0.257207374262142,0,0,0.142977993658148,1.08524321078289,0,0,0.355391948742546,0.791951872933429,0.904318131178758,0.871533458600294,0.99972991182057,0,0.502257091432126,0,0.479249710983165,0,0,0,1.02738161275192,0.179060963239896,0,0.197030760201927,0.215627574859517,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6659 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11200 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-213bp_to_AJ420500_5end | |||
|coexpression_cluster_id=C1086 | |||
|description=CAGE_peak_8_at_SOX4_5end | |||
|id=chr6:21597431..21597447,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.47e-20!254;CL:0002321!2.59e-08!248;CL:0000220!5.48e-08!246 | |||
|ontology_enrichment_celltype_v019=CL:0000540;3.44e-08;6!CL:0000404;3.44e-08;6!CL:1000449;3.56e-07;15!CL:1000497;3.79e-07;17!CL:0002518;3.79e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.37e-14,253;CL:0000540,2.26e-08,6;CL:0000031,2.26e-08,6;CL:0000404,2.26e-08,6;CL:1000497,1.79e-07,17;CL:0002518,1.79e-07,17;CL:1000449,2.27e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000031;3.44e-08;6 | |||
|ontology_enrichment_disease=DOID:14566!4.14e-12!239;DOID:162!5.08e-12!235;DOID:0050687!4.66e-08!143;DOID:305!8.14e-08!106;DOID:0050686!3.18e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,7.20e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0006554!5.68e-08!44;UBERON:0001008!1.91e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.80e-09;30!UBERON:0001008;5.80e-09;30!UBERON:0006555;3.56e-07;15!UBERON:0004819;3.56e-07;15!UBERON:0001285;3.56e-07;15!UBERON:0007684;3.56e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.27e-07,15;UBERON:0009773,2.27e-07,15;UBERON:0001231,2.27e-07,15;UBERON:0001285,2.27e-07,15;UBERON:0007684,2.27e-07,15;UBERON:0004208,2.27e-07,15;UBERON:0000353,8.51e-07,15;UBERON:0006555,9.88e-07,16;UBERON:0004819,9.88e-07,16 | |||
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| |||
|short_description=p8@SOX4 | |||
}} |
Revision as of 19:36, 13 September 2013
Short description: | p8@SOX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SOX4_5end |
Coexpression cluster: | C1086_occipital_parietal_temporal_duodenum_small_Neurons_transitionalcell |
Association with transcript: | -213bp_to_AJ420500_5end |
EntrezGene: | SOX4 |
HGNC: | 11200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.37e-14 | 253 |
neuron | 2.26e-08 | 6 |
neuroblast | 2.26e-08 | 6 |
electrically signaling cell | 2.26e-08 | 6 |
kidney cell | 1.79e-07 | 17 |
kidney epithelial cell | 1.79e-07 | 17 |
epithelial cell of nephron | 2.27e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.27e-07 | 15 |
renal tubule | 2.27e-07 | 15 |
nephron tubule | 2.27e-07 | 15 |
nephron | 2.27e-07 | 15 |
uriniferous tubule | 2.27e-07 | 15 |
nephrogenic mesenchyme | 2.27e-07 | 15 |
parenchyma | 8.51e-07 | 15 |
excretory tube | 9.88e-07 | 16 |
kidney epithelium | 9.88e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.20e-07 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.