FFCP PHASE1:Hg19::chr6:152639521..152639532,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23345|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17089|TSSclassifier=S|UniProt=|association_with_transcript=-42bp_to_ENST00000356820,ENST00000367256,uc003qos.3,uc010kiv.2_5end|description=CAGE_peak_44_at_SYNE1_5end|id=chr6:152639521..152639532,-|ontology_enrichment_celltype=CL:0002139!5.02e-18!24;CL:0000213!3.62e-13!57;CL:0000215!3.62e-13!57;CL:0000115!1.72e-11!35;CL:0000071!9.78e-11!18;CL:0002546!9.78e-11!18;CL:0005020!8.67e-10!6;CL:0002138!8.67e-10!6;CL:0005022!8.67e-10!6;CL:0002078!1.34e-08!44|ontology_enrichment_celltype_v019=CL:0002144;9.90e-11;3!CL:0000136;1.13e-09;13|ontology_enrichment_celltype_v019_2=CL:0002144,8.99e-11,3;CL:0000136,1.85e-08,15|ontology_enrichment_development_v019=UBERON:0010226;2.37e-29;1!UBERON:0004872;2.46e-17;7|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000055!1.88e-11!69;UBERON:0003978!5.41e-11!3;UBERON:0009751!5.41e-11!3;UBERON:0000946!5.41e-11!3;UBERON:0002523!5.41e-11!3;UBERON:0005983!5.41e-11!3;UBERON:0002165!5.41e-11!3;UBERON:0002062!5.41e-11!3;UBERON:0007280!5.41e-11!3;UBERON:0001986!9.78e-11!18;UBERON:0004638!9.78e-11!18;UBERON:0004852!9.78e-11!18;UBERON:0002049!1.86e-09!79;UBERON:0007798!1.86e-09!79;UBERON:0004872!1.13e-08!84;UBERON:0000487!1.56e-08!22;UBERON:0002133!7.44e-08!2;UBERON:0001981!1.01e-07!60;UBERON:0007500!1.01e-07!60;UBERON:0004537!1.01e-07!60;UBERON:0006965!1.01e-07!60;UBERON:0004535!2.16e-07!110;UBERON:0006914!2.40e-07!25;UBERON:0001473!2.50e-07!8;UBERON:0004536!2.50e-07!8;UBERON:0006558!2.50e-07!8;UBERON:0001009!4.46e-07!113|ontology_enrichment_uberon_v019=UBERON:0002106;6.91e-39;3!UBERON:0002084;2.37e-29;1!UBERON:0002082;2.37e-29;1!UBERON:0004177;8.09e-24;5!UBERON:0005057;8.09e-24;5!UBERON:0010523;9.90e-11;3!UBERON:0004151;9.90e-11;3!UBERON:0001915;9.90e-11;3!UBERON:0001982;9.90e-11;3!UBERON:0002075;2.44e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0002106,6.91e-39,3;UBERON:0004854,6.91e-39,3;UBERON:0009034,6.91e-39,3;UBERON:0002095,6.91e-39,3;UBERON:0004782,6.91e-39,3;UBERON:0003281,6.91e-39,3;UBERON:0009664,6.91e-39,3;UBERON:0002296,6.91e-39,3;UBERON:0005602,6.91e-39,3;UBERON:0001179,6.91e-39,3;UBERON:0006293,6.91e-39,3;UBERON:0002084,2.37e-29,1;UBERON:0002082,2.37e-29,1;UBERON:0010226,2.37e-29,1;UBERON:0004177,2.46e-17,7;UBERON:0005057,2.46e-17,7;UBERON:0000945,2.65e-15,8;UBERON:0010039,2.65e-15,8;UBERON:0010523,8.99e-11,3;UBERON:0001915,8.99e-11,3;UBERON:0001982,8.99e-11,3;UBERON:0004151,9.90e-11,3;UBERON:0004457,1.53e-10,12;UBERON:0000042,1.53e-10,12;UBERON:0003887,1.53e-10,12;UBERON:0002075,2.44e-07,18|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0,0.208994966536811,0.775250277507987,0.71153252537342,0.66944122552934,1.61131726843659,0.760272105718513,0,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.866198686566443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,1.74306691720059,0.399891964728228,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.667852230137435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.458320848023367,0.717873024576814,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.427149650270779,0.471612915298998,0,0,0,0,0,1.08803560673895,1.0027595760908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0.150257608997218,0.761610424337591,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-42bp_to_ENST00000356820,ENST00000367256,uc003qos.3,uc010kiv.2_5end | |||
|description=CAGE_peak_44_at_SYNE1_5end | |||
|id=chr6:152639521..152639532,- | |||
|ontology_enrichment_celltype=CL:0002139!5.02e-18!24;CL:0000213!3.62e-13!57;CL:0000215!3.62e-13!57;CL:0000115!1.72e-11!35;CL:0000071!9.78e-11!18;CL:0002546!9.78e-11!18;CL:0005020!8.67e-10!6;CL:0002138!8.67e-10!6;CL:0005022!8.67e-10!6;CL:0002078!1.34e-08!44 | |||
|ontology_enrichment_celltype_v019=CL:0002144;9.90e-11;3!CL:0000136;1.13e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,8.99e-11,3;CL:0000136,1.85e-08,15 | |||
|ontology_enrichment_development_v019=UBERON:0010226;2.37e-29;1!UBERON:0004872;2.46e-17;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!1.88e-11!69;UBERON:0003978!5.41e-11!3;UBERON:0009751!5.41e-11!3;UBERON:0000946!5.41e-11!3;UBERON:0002523!5.41e-11!3;UBERON:0005983!5.41e-11!3;UBERON:0002165!5.41e-11!3;UBERON:0002062!5.41e-11!3;UBERON:0007280!5.41e-11!3;UBERON:0001986!9.78e-11!18;UBERON:0004638!9.78e-11!18;UBERON:0004852!9.78e-11!18;UBERON:0002049!1.86e-09!79;UBERON:0007798!1.86e-09!79;UBERON:0004872!1.13e-08!84;UBERON:0000487!1.56e-08!22;UBERON:0002133!7.44e-08!2;UBERON:0001981!1.01e-07!60;UBERON:0007500!1.01e-07!60;UBERON:0004537!1.01e-07!60;UBERON:0006965!1.01e-07!60;UBERON:0004535!2.16e-07!110;UBERON:0006914!2.40e-07!25;UBERON:0001473!2.50e-07!8;UBERON:0004536!2.50e-07!8;UBERON:0006558!2.50e-07!8;UBERON:0001009!4.46e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;6.91e-39;3!UBERON:0002084;2.37e-29;1!UBERON:0002082;2.37e-29;1!UBERON:0004177;8.09e-24;5!UBERON:0005057;8.09e-24;5!UBERON:0010523;9.90e-11;3!UBERON:0004151;9.90e-11;3!UBERON:0001915;9.90e-11;3!UBERON:0001982;9.90e-11;3!UBERON:0002075;2.44e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,6.91e-39,3;UBERON:0004854,6.91e-39,3;UBERON:0009034,6.91e-39,3;UBERON:0002095,6.91e-39,3;UBERON:0004782,6.91e-39,3;UBERON:0003281,6.91e-39,3;UBERON:0009664,6.91e-39,3;UBERON:0002296,6.91e-39,3;UBERON:0005602,6.91e-39,3;UBERON:0001179,6.91e-39,3;UBERON:0006293,6.91e-39,3;UBERON:0002084,2.37e-29,1;UBERON:0002082,2.37e-29,1;UBERON:0010226,2.37e-29,1;UBERON:0004177,2.46e-17,7;UBERON:0005057,2.46e-17,7;UBERON:0000945,2.65e-15,8;UBERON:0010039,2.65e-15,8;UBERON:0010523,8.99e-11,3;UBERON:0001915,8.99e-11,3;UBERON:0001982,8.99e-11,3;UBERON:0004151,9.90e-11,3;UBERON:0004457,1.53e-10,12;UBERON:0000042,1.53e-10,12;UBERON:0003887,1.53e-10,12;UBERON:0002075,2.44e-07,18 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0,0.208994966536811,0.775250277507987,0.71153252537342,0.66944122552934,1.61131726843659,0.760272105718513,0,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.866198686566443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,1.74306691720059,0.399891964728228,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.667852230137435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.458320848023367,0.717873024576814,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.427149650270779,0.471612915298998,0,0,0,0,0,1.08803560673895,1.0027595760908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0.150257608997218,0.761610424337591,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,3.10146929333517,2.57831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p44@SYNE1 | |||
}} |
Revision as of 18:48, 13 September 2013
Short description: | p44@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_44_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | -42bp_to_ENST00000356820, ENST00000367256, uc003qos.3, uc010kiv.2_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 8.99e-11 | 3 |
fat cell | 1.85e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
spleen | 6.91e-39 | 3 |
gastrointestinal system mesentery | 6.91e-39 | 3 |
stomach region | 6.91e-39 | 3 |
mesentery | 6.91e-39 | 3 |
gastrointestinal system serosa | 6.91e-39 | 3 |
mesentery of stomach | 6.91e-39 | 3 |
gut mesentery | 6.91e-39 | 3 |
dorsal mesentery | 6.91e-39 | 3 |
dorsal mesogastrium | 6.91e-39 | 3 |
peritoneal cavity | 6.91e-39 | 3 |
spleen primordium | 6.91e-39 | 3 |
heart left ventricle | 2.37e-29 | 1 |
cardiac ventricle | 2.37e-29 | 1 |
future cardiac ventricle | 2.37e-29 | 1 |
hemopoietic organ | 2.46e-17 | 7 |
immune organ | 2.46e-17 | 7 |
stomach | 2.65e-15 | 8 |
food storage organ | 2.65e-15 | 8 |
microcirculatory vessel | 8.99e-11 | 3 |
endothelium of capillary | 8.99e-11 | 3 |
capillary | 8.99e-11 | 3 |
cardiac chamber | 9.90e-11 | 3 |
cavity lining | 1.53e-10 | 12 |
serous membrane | 1.53e-10 | 12 |
intraembryonic coelom | 1.53e-10 | 12 |
viscus | 2.44e-07 | 18 |
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