FFCP PHASE1:Hg19::chr7:45952705..45952723,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3486|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=5472|TSSclassifier=S|UniProt=|association_with_transcript=-29bp_to_S56205_5end|coexpression_cluster_id=C223|description=CAGE_peak_9_at_IGFBP3_5end|id=chr7:45952705..45952723,-|ontology_enrichment_celltype=CL:0000055!1.67e-11!180;CL:0000499!4.88e-10!27;CL:0000057!4.91e-09!75;CL:0002620!1.06e-08!23;CL:0002334!1.29e-07!12|ontology_enrichment_celltype_v019=CL:0002620;1.65e-16;23!CL:0000153;5.04e-11;9!CL:0000447;5.04e-11;9!CL:0000499;9.36e-11;28!CL:0002334;6.33e-09;12!CL:0002595;2.23e-08;5!CL:0002615;2.24e-08;3!CL:0000327;4.20e-08;15!CL:0002579;4.43e-08;3!CL:0000135;5.07e-08;3!CL:0000388;5.07e-08;3!CL:0000138;6.13e-08;6|ontology_enrichment_celltype_v019_2=CL:0000057,9.01e-17,76;CL:0002620,1.58e-16,23;CL:0000153,5.06e-11,9;CL:0000447,5.06e-11,9;CL:0000048,1.05e-10,427;CL:0000499,1.18e-10,28;CL:0000723,2.45e-10,433;CL:0000034,7.36e-10,441;CL:0002334,4.86e-09,12;CL:0000134,1.36e-08,354;CL:0002615,2.03e-08,3;CL:0002595,2.42e-08,5;CL:0002320,3.59e-08,361;CL:0002579,3.98e-08,3;CL:0000327,4.14e-08,15;CL:0000058,6.14e-08,6;CL:0000138,6.14e-08,6;CL:0000135,6.81e-08,3;CL:0000388,6.81e-08,3;CL:0000136,4.13e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!7.94e-07!5;DOID:450!7.94e-07!5;DOID:66!7.94e-07!5;DOID:423!7.94e-07!5;DOID:0080000!7.94e-07!5;DOID:11722!7.94e-07!5|ontology_enrichment_disease_v019=DOID:17;3.39e-13;5!DOID:450;3.39e-13;5!DOID:66;3.39e-13;5!DOID:423;3.39e-13;5!DOID:0080000;3.39e-13;5!DOID:11722;3.39e-13;5|ontology_enrichment_disease_v019_2=DOID:17,2.75e-13,5;DOID:450,2.75e-13,5;DOID:66,2.75e-13,5;DOID:423,2.75e-13,5;DOID:0080000,2.75e-13,5;DOID:11722,2.75e-13,5|ontology_enrichment_uberon=UBERON:0004573!8.18e-08!33;UBERON:0004571!8.18e-08!33;UBERON:0003688!1.54e-07!6;UBERON:0002358!1.54e-07!6;UBERON:0003684!1.54e-07!6;UBERON:0001178!1.54e-07!6;UBERON:0004872!1.89e-07!84;UBERON:0001637!4.67e-07!42;UBERON:0003509!4.67e-07!42;UBERON:0004572!4.67e-07!42;UBERON:0004457!8.74e-07!12;UBERON:0000042!8.74e-07!12|ontology_enrichment_uberon_v019=UBERON:0004457;2.08e-17;9!UBERON:0000042;2.08e-17;9!UBERON:0003688;8.94e-15;6!UBERON:0002358;8.94e-15;6!UBERON:0003684;8.94e-15;6!UBERON:0001178;8.94e-15;6!UBERON:0003834;2.23e-08;5!UBERON:0001533;2.23e-08;5!UBERON:0002097;2.38e-08;41!UBERON:0007846;5.07e-08;3!UBERON:0000043;5.07e-08;3!UBERON:0007845;5.07e-08;3!UBERON:0002199;2.00e-07;46!UBERON:0002416;2.00e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0003688,7.31e-15,6;UBERON:0002358,7.31e-15,6;UBERON:0003684,7.31e-15,6;UBERON:0001178,7.31e-15,6;UBERON:0004457,1.02e-12,12;UBERON:0000042,1.02e-12,12;UBERON:0002097,1.22e-10,41;UBERON:0002199,1.80e-10,46;UBERON:0002416,1.80e-10,46;UBERON:0003834,2.42e-08,5;UBERON:0001533,2.42e-08,5;UBERON:0007846,6.81e-08,3;UBERON:0000043,6.81e-08,3;UBERON:0007845,6.81e-08,3;UBERON:0002384,1.33e-07,371|phase1_expression=1.63510541343501,2.35510576280081,2.96004248601539,7.00513088471913,2.23480547213644,3.48935409640147,0,0.631719873426831,0,0.491467873003018,0,0,0,0,0,0,0,0,0.975865597581014,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,55.6616294672232,26.0695713530663,52.579286382779,0.795285947051099,10.2193322763554,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0.496971951695318,2.5326102332916,0.132409180813219,1.43418310374407,0.354668382198357,0.560677600142307,0,3.45334567784024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0,0,4.48474089222155,2.98980344345994,6.14602513362729,3.30100205692843,4.94652140344507,4.89517026086695,6.14185625894246,0.675105328965065,3.41029518064195,8.07788077581166,7.17989209409935,1.2931684545505,8.52023022039874,7.95941575998358,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0.928735856063958,0,0,0.168584690078102,0.482022059766964,0.110293972732394,0,0,0,0,0,0,0,0.4115740113314,0,0,1.96565443335525,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.87192013766656,0,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,2.1100756394171,0.871533458600294,0,0,0,0,0.718874566474748,0,0,1.15825045334063,1.84928690295345,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,1.87173775377726,1.42743191037729,0.157702415033935,0.937131319941706,0.300946099727719,2.27407504055985,2.0694614258501,0,0.553107505625109,0.260650843404249,0,0,0,0,0,0,0,3.0239029332968,1.48864684691266,0.153461973288062,2.80660094433074,3.20347873139252,3.07024349440022,1.60853921143608,1.484180664449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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3486 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5472 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-29bp_to_S56205_5end | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_9_at_IGFBP3_5end | |||
|id=chr7:45952705..45952723,- | |||
|ontology_enrichment_celltype=CL:0000055!1.67e-11!180;CL:0000499!4.88e-10!27;CL:0000057!4.91e-09!75;CL:0002620!1.06e-08!23;CL:0002334!1.29e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.65e-16;23!CL:0000153;5.04e-11;9!CL:0000447;5.04e-11;9!CL:0000499;9.36e-11;28!CL:0002334;6.33e-09;12!CL:0002595;2.23e-08;5!CL:0002615;2.24e-08;3!CL:0000327;4.20e-08;15!CL:0002579;4.43e-08;3!CL:0000135;5.07e-08;3!CL:0000388;5.07e-08;3!CL:0000138;6.13e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.01e-17,76;CL:0002620,1.58e-16,23;CL:0000153,5.06e-11,9;CL:0000447,5.06e-11,9;CL:0000048,1.05e-10,427;CL:0000499,1.18e-10,28;CL:0000723,2.45e-10,433;CL:0000034,7.36e-10,441;CL:0002334,4.86e-09,12;CL:0000134,1.36e-08,354;CL:0002615,2.03e-08,3;CL:0002595,2.42e-08,5;CL:0002320,3.59e-08,361;CL:0002579,3.98e-08,3;CL:0000327,4.14e-08,15;CL:0000058,6.14e-08,6;CL:0000138,6.14e-08,6;CL:0000135,6.81e-08,3;CL:0000388,6.81e-08,3;CL:0000136,4.13e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!7.94e-07!5;DOID:450!7.94e-07!5;DOID:66!7.94e-07!5;DOID:423!7.94e-07!5;DOID:0080000!7.94e-07!5;DOID:11722!7.94e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;3.39e-13;5!DOID:450;3.39e-13;5!DOID:66;3.39e-13;5!DOID:423;3.39e-13;5!DOID:0080000;3.39e-13;5!DOID:11722;3.39e-13;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.75e-13,5;DOID:450,2.75e-13,5;DOID:66,2.75e-13,5;DOID:423,2.75e-13,5;DOID:0080000,2.75e-13,5;DOID:11722,2.75e-13,5 | |||
|ontology_enrichment_uberon=UBERON:0004573!8.18e-08!33;UBERON:0004571!8.18e-08!33;UBERON:0003688!1.54e-07!6;UBERON:0002358!1.54e-07!6;UBERON:0003684!1.54e-07!6;UBERON:0001178!1.54e-07!6;UBERON:0004872!1.89e-07!84;UBERON:0001637!4.67e-07!42;UBERON:0003509!4.67e-07!42;UBERON:0004572!4.67e-07!42;UBERON:0004457!8.74e-07!12;UBERON:0000042!8.74e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.08e-17;9!UBERON:0000042;2.08e-17;9!UBERON:0003688;8.94e-15;6!UBERON:0002358;8.94e-15;6!UBERON:0003684;8.94e-15;6!UBERON:0001178;8.94e-15;6!UBERON:0003834;2.23e-08;5!UBERON:0001533;2.23e-08;5!UBERON:0002097;2.38e-08;41!UBERON:0007846;5.07e-08;3!UBERON:0000043;5.07e-08;3!UBERON:0007845;5.07e-08;3!UBERON:0002199;2.00e-07;46!UBERON:0002416;2.00e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,7.31e-15,6;UBERON:0002358,7.31e-15,6;UBERON:0003684,7.31e-15,6;UBERON:0001178,7.31e-15,6;UBERON:0004457,1.02e-12,12;UBERON:0000042,1.02e-12,12;UBERON:0002097,1.22e-10,41;UBERON:0002199,1.80e-10,46;UBERON:0002416,1.80e-10,46;UBERON:0003834,2.42e-08,5;UBERON:0001533,2.42e-08,5;UBERON:0007846,6.81e-08,3;UBERON:0000043,6.81e-08,3;UBERON:0007845,6.81e-08,3;UBERON:0002384,1.33e-07,371 | |||
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| |||
|short_description=p9@IGFBP3 | |||
}} |
Revision as of 01:25, 14 September 2013
Short description: | p9@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | -29bp_to_S56205_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.01e-17 | 76 |
skin fibroblast | 1.58e-16 | 23 |
GAG secreting cell | 5.06e-11 | 9 |
carbohydrate secreting cell | 5.06e-11 | 9 |
multi fate stem cell | 1.05e-10 | 427 |
stromal cell | 1.18e-10 | 28 |
somatic stem cell | 2.45e-10 | 433 |
stem cell | 7.36e-10 | 441 |
preadipocyte | 4.86e-09 | 12 |
mesenchymal cell | 1.36e-08 | 354 |
adipocyte of omentum tissue | 2.03e-08 | 3 |
smooth muscle cell of the subclavian artery | 2.42e-08 | 5 |
connective tissue cell | 3.59e-08 | 361 |
omentum preadipocyte | 3.98e-08 | 3 |
extracellular matrix secreting cell | 4.14e-08 | 15 |
chondroblast | 6.14e-08 | 6 |
chondrocyte | 6.14e-08 | 6 |
fibrocyte | 6.81e-08 | 3 |
tendon cell | 6.81e-08 | 3 |
fat cell | 4.13e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 7.31e-15 | 6 |
peritoneum | 7.31e-15 | 6 |
abdominal cavity | 7.31e-15 | 6 |
visceral peritoneum | 7.31e-15 | 6 |
cavity lining | 1.02e-12 | 12 |
serous membrane | 1.02e-12 | 12 |
skin of body | 1.22e-10 | 41 |
integument | 1.80e-10 | 46 |
integumental system | 1.80e-10 | 46 |
thoracic segment blood vessel | 2.42e-08 | 5 |
subclavian artery | 2.42e-08 | 5 |
dense regular connective tissue | 6.81e-08 | 3 |
tendon | 6.81e-08 | 3 |
regular connective tissue | 6.81e-08 | 3 |
connective tissue | 1.33e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.75e-13 | 5 |
myotonic disease | 2.75e-13 | 5 |
muscle tissue disease | 2.75e-13 | 5 |
myopathy | 2.75e-13 | 5 |
muscular disease | 2.75e-13 | 5 |
myotonic dystrophy | 2.75e-13 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.