FFCP PHASE1:Hg19::chr8:90769563..90769576,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=15bp_to_ENST00000523859_5end|coexpression_cluster_id=C514|description=CAGE_peak_1_at_ENST00000523859_5end|id=chr8:90769563..90769576,-|ontology_enrichment_celltype=CL:0000359!3.13e-08!32|ontology_enrichment_celltype_v019=CL:0000359;1.22e-10;32!CL:0002144;1.49e-09;3!CL:0002595;2.88e-09;5!CL:0002138;3.80e-08;6!CL:0002139;5.54e-08;24|ontology_enrichment_celltype_v019_2=CL:0000359,2.03e-11,32;CL:0002144,1.43e-09,3;CL:0002595,2.86e-09,5;CL:0005020,2.67e-08,6;CL:0002138,2.67e-08,6;CL:0005022,2.67e-08,6;CL:0002139,3.48e-08,24;CL:0000192,9.79e-08,43;CL:0000514,9.79e-08,43;CL:0000393,1.45e-07,61;CL:0000211,1.45e-07,61;CL:0000222,5.67e-07,121|ontology_enrichment_development_v019=CL:0005022;3.80e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000055!4.44e-11!69;UBERON:0002049!3.11e-10!79;UBERON:0007798!3.11e-10!79;UBERON:0004573!1.79e-09!33;UBERON:0004571!1.79e-09!33;UBERON:0001981!4.32e-09!60;UBERON:0007500!4.32e-09!60;UBERON:0004537!4.32e-09!60;UBERON:0006965!4.32e-09!60;UBERON:0001637!5.43e-09!42;UBERON:0003509!5.43e-09!42;UBERON:0004572!5.43e-09!42;UBERON:0004872!1.82e-08!84;UBERON:0004535!4.74e-08!110;UBERON:0001009!1.08e-07!113|ontology_enrichment_uberon_v019=UBERON:0004573;5.66e-11;33!UBERON:0004571;5.66e-11;33!UBERON:0010523;1.49e-09;3!UBERON:0001915;1.49e-09;3!UBERON:0001982;1.49e-09;3!UBERON:0003834;2.88e-09;5!UBERON:0001533;2.88e-09;5!UBERON:0000055;1.87e-08;65!UBERON:0001637;9.19e-08;42!UBERON:0003509;9.19e-08;42!UBERON:0004572;9.19e-08;42|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.28e-15,68;UBERON:0004573,7.08e-13,33;UBERON:0004571,7.08e-13,33;UBERON:0002049,7.89e-13,78;UBERON:0007798,7.89e-13,78;UBERON:0007500,5.96e-12,59;UBERON:0001981,5.96e-12,59;UBERON:0004537,5.96e-12,59;UBERON:0006965,5.96e-12,59;UBERON:0004535,3.49e-11,109;UBERON:0004872,3.82e-11,83;UBERON:0001009,1.06e-10,112;UBERON:0010523,1.43e-09,3;UBERON:0001915,1.43e-09,3;UBERON:0001982,1.43e-09,3;UBERON:0001637,2.13e-09,42;UBERON:0003509,2.13e-09,42;UBERON:0004572,2.13e-09,42;UBERON:0003834,2.86e-09,5;UBERON:0001533,2.86e-09,5;UBERON:0003914,5.05e-08,117;UBERON:0003081,6.33e-07,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,1.34465029290355,0.602694528023977,0,1.46379839637152,0.246242116153576,0,0,0,0,0.125542639594803,0.458480434487708,0.410502947249729,0.629686250509434,0.393364276848904,0,0,0,0,0,0.154934401160603,2.13253848731132,1.76160263600908,0,0.802177789880567,0,0,0,0.257575567634187,0,0,0.242584061187816,0.464858073811369,0.411167888021826,1.23882548358041,0.575384784644301,0.256160706529101,1.6553756092201,1.72372840368309,1.29096936716765,0,0,0,0.674170453335254,1.22433556948361,0.962787081228281,0.639337125799041,0,0,1.27867425159808,0.290209238628584,1.13477044938228,1.24564449799115,0,0,1.3031330682307,0,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,1.12101712596307,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.661743720148475,0.221729397462564,0.263504357079378,0.261958150995425,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0,0.417989933073621,0.258416759169329,0.35576626268671,1.67360306382335,3.62546385398232,3.04108842287405,2.92874469057803,0.735326160691737,1.62028389576352,0.17859945656816,0.22452937262617,0.337834441449967,1.53316637465883,0,0,0,0,0,0,0.12663051166458,0.662045904066094,0.286836620748814,0,0,1.06748995729705,0.49333509683432,0,0.269421344139376,0,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0.45071417671979,0,0.358779271377724,0,0.211931901159562,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0.710019185033229,0,0,0,0,0.286804595389004,1.46368447355514,0.927708378250397,1.51052125730374,0.829288440122964,1.26160425437814,1.82488679537915,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0.231860809950154,0,24.9753954626658,22.6862901162539,35.3872723156353,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0.576479813667846,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0.542621605391443,0.823240336780769,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,2.99161459204025,0,0,0,0,0.207970861530807,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0,0.195801157462741,0,0.206768026122887,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0,0,0,0,0,0,0.524497659837696,0,0.15403067420883,0,1.46139224653261,0.105551628892876,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0,0.65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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=15bp_to_ENST00000523859_5end | |||
|coexpression_cluster_id=C514 | |||
|description=CAGE_peak_1_at_ENST00000523859_5end | |||
|id=chr8:90769563..90769576,- | |||
|ontology_enrichment_celltype=CL:0000359!3.13e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.22e-10;32!CL:0002144;1.49e-09;3!CL:0002595;2.88e-09;5!CL:0002138;3.80e-08;6!CL:0002139;5.54e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.03e-11,32;CL:0002144,1.43e-09,3;CL:0002595,2.86e-09,5;CL:0005020,2.67e-08,6;CL:0002138,2.67e-08,6;CL:0005022,2.67e-08,6;CL:0002139,3.48e-08,24;CL:0000192,9.79e-08,43;CL:0000514,9.79e-08,43;CL:0000393,1.45e-07,61;CL:0000211,1.45e-07,61;CL:0000222,5.67e-07,121 | |||
|ontology_enrichment_development_v019=CL:0005022;3.80e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!4.44e-11!69;UBERON:0002049!3.11e-10!79;UBERON:0007798!3.11e-10!79;UBERON:0004573!1.79e-09!33;UBERON:0004571!1.79e-09!33;UBERON:0001981!4.32e-09!60;UBERON:0007500!4.32e-09!60;UBERON:0004537!4.32e-09!60;UBERON:0006965!4.32e-09!60;UBERON:0001637!5.43e-09!42;UBERON:0003509!5.43e-09!42;UBERON:0004572!5.43e-09!42;UBERON:0004872!1.82e-08!84;UBERON:0004535!4.74e-08!110;UBERON:0001009!1.08e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.66e-11;33!UBERON:0004571;5.66e-11;33!UBERON:0010523;1.49e-09;3!UBERON:0001915;1.49e-09;3!UBERON:0001982;1.49e-09;3!UBERON:0003834;2.88e-09;5!UBERON:0001533;2.88e-09;5!UBERON:0000055;1.87e-08;65!UBERON:0001637;9.19e-08;42!UBERON:0003509;9.19e-08;42!UBERON:0004572;9.19e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.28e-15,68;UBERON:0004573,7.08e-13,33;UBERON:0004571,7.08e-13,33;UBERON:0002049,7.89e-13,78;UBERON:0007798,7.89e-13,78;UBERON:0007500,5.96e-12,59;UBERON:0001981,5.96e-12,59;UBERON:0004537,5.96e-12,59;UBERON:0006965,5.96e-12,59;UBERON:0004535,3.49e-11,109;UBERON:0004872,3.82e-11,83;UBERON:0001009,1.06e-10,112;UBERON:0010523,1.43e-09,3;UBERON:0001915,1.43e-09,3;UBERON:0001982,1.43e-09,3;UBERON:0001637,2.13e-09,42;UBERON:0003509,2.13e-09,42;UBERON:0004572,2.13e-09,42;UBERON:0003834,2.86e-09,5;UBERON:0001533,2.86e-09,5;UBERON:0003914,5.05e-08,117;UBERON:0003081,6.33e-07,203 | |||
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| |||
|short_description=p1@ENST00000523859 | |||
}} |
Revision as of 06:18, 14 September 2013
Short description: | p1@ENST00000523859 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000523859_5end |
Coexpression cluster: | C514_Lymphatic_Endothelial_mycosis_appendix_heart_CD14_migratory |
Association with transcript: | 15bp_to_ENST00000523859_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.03e-11 | 32 |
capillary endothelial cell | 1.43e-09 | 3 |
smooth muscle cell of the subclavian artery | 2.86e-09 | 5 |
lymphangioblast | 2.67e-08 | 6 |
endothelial cell of lymphatic vessel | 2.67e-08 | 6 |
vascular lymphangioblast | 2.67e-08 | 6 |
endothelial cell of vascular tree | 3.48e-08 | 24 |
smooth muscle cell | 9.79e-08 | 43 |
smooth muscle myoblast | 9.79e-08 | 43 |
electrically responsive cell | 1.45e-07 | 61 |
electrically active cell | 1.45e-07 | 61 |
mesodermal cell | 5.67e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.28e-15 | 68 |
systemic artery | 7.08e-13 | 33 |
systemic arterial system | 7.08e-13 | 33 |
vasculature | 7.89e-13 | 78 |
vascular system | 7.89e-13 | 78 |
epithelial tube open at both ends | 5.96e-12 | 59 |
blood vessel | 5.96e-12 | 59 |
blood vasculature | 5.96e-12 | 59 |
vascular cord | 5.96e-12 | 59 |
cardiovascular system | 3.49e-11 | 109 |
splanchnic layer of lateral plate mesoderm | 3.82e-11 | 83 |
circulatory system | 1.06e-10 | 112 |
microcirculatory vessel | 1.43e-09 | 3 |
endothelium of capillary | 1.43e-09 | 3 |
capillary | 1.43e-09 | 3 |
artery | 2.13e-09 | 42 |
arterial blood vessel | 2.13e-09 | 42 |
arterial system | 2.13e-09 | 42 |
thoracic segment blood vessel | 2.86e-09 | 5 |
subclavian artery | 2.86e-09 | 5 |
epithelial tube | 5.05e-08 | 117 |
lateral plate mesoderm | 6.33e-07 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.