FFCP PHASE1:Hg19::chrX:106146562..106146577,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=92129|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25117|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000411805_5end|coexpression_cluster_id=C114|description=CAGE_peak_1_at_RIPPLY1_5end|id=chrX:106146562..106146577,-|ontology_enrichment_celltype=CL:0000128!1.58e-25!7;CL:0000126!1.58e-25!7;CL:0000127!1.58e-25!7;CL:0002453!1.58e-25!7;CL:0000064!3.89e-23!3;CL:0005012!3.89e-23!3;CL:0000067!3.89e-23!3;CL:0002304!3.89e-23!3;CL:0002603!4.34e-22!3;CL:0000243!8.56e-15!15;CL:0000125!8.56e-15!15;CL:0000030!8.56e-15!15;CL:0000339!8.56e-15!15;CL:0000095!3.47e-13!17;CL:0000123!3.47e-13!17;CL:0000133!2.42e-12!59;CL:0002319!3.59e-12!25;CL:0000650!7.87e-11!3;CL:1000618!7.87e-11!3;CL:1001318!7.87e-11!3;CL:0002173!7.87e-11!3;CL:1000500!7.87e-11!3;CL:0002605!1.28e-10!3;CL:0000221!5.35e-10!71;CL:0000075!3.17e-09!27;CL:0000306!3.94e-08!4;CL:0002222!3.94e-08!4;CL:0002224!3.94e-08!4;CL:0000333!2.36e-07!41;CL:0000669!7.94e-07!5|ontology_enrichment_celltype_v019=CL:0000064;8.84e-47;3!CL:0000067;8.84e-47;3!CL:0005012;8.84e-47;3!CL:0002304;8.84e-47;3!CL:0000650;2.75e-31;2!CL:1000500;2.75e-31;2!CL:1000618;2.75e-31;2!CL:1001318;2.75e-31;2!CL:0002173;2.75e-31;2!CL:0000669;3.45e-16;4!CL:1000746;1.16e-09;7!CL:1000612;1.16e-09;7!CL:0000128;1.29e-09;7!CL:0000126;1.29e-09;7!CL:0000127;1.29e-09;7!CL:0000075;1.81e-09;27!CL:0000243;1.32e-08;15!CL:0000125;1.32e-08;15!CL:0000095;9.32e-08;17!CL:0000710;1.45e-07;20!CL:1000507;5.03e-07;10!CL:1000494;5.03e-07;10|ontology_enrichment_celltype_v019_2=CL:0000064,8.84e-47,3;CL:0000067,8.84e-47,3;CL:0005012,8.84e-47,3;CL:0002304,8.84e-47,3;CL:0000650,2.54e-31,2;CL:1000500,2.54e-31,2;CL:1000618,2.54e-31,2;CL:1001318,2.54e-31,2;CL:0002173,2.54e-31,2;CL:0000669,3.32e-16,4;CL:1000746,1.13e-09,7;CL:1000612,1.13e-09,7;CL:0000128,1.35e-09,7;CL:0000126,1.35e-09,7;CL:0000127,1.35e-09,7;CL:0002453,1.35e-09,7;CL:0000075,1.81e-09,27;CL:0000133,8.58e-09,59;CL:0000243,1.30e-08,15;CL:0000125,1.30e-08,15;CL:0000030,1.30e-08,15;CL:0000339,1.30e-08,15;CL:0000095,9.21e-08,17;CL:0000123,9.21e-08,17;CL:0000710,1.45e-07,20;CL:0000221,3.39e-07,72;CL:1000507,4.96e-07,10;CL:1000494,4.96e-07,10|ontology_enrichment_development_v019=CL:0000339;1.32e-08;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001778!3.89e-23!3;UBERON:0001775!3.89e-23!3;UBERON:0000488!1.67e-17!4;UBERON:0007625!1.25e-16!11;UBERON:0001905!2.78e-15!2;UBERON:0002757!2.78e-15!2;UBERON:0010134!2.78e-15!2;UBERON:0002784!2.78e-15!2;UBERON:0005408!2.78e-15!2;UBERON:0001899!2.78e-15!2;UBERON:0003075!1.71e-13!86;UBERON:0007284!1.71e-13!86;UBERON:0000019!2.61e-13!19;UBERON:0000047!2.61e-13!19;UBERON:0004088!2.61e-13!19;UBERON:0003072!2.61e-13!19;UBERON:0003071!2.61e-13!19;UBERON:0004128!2.61e-13!19;UBERON:0001801!4.99e-13!14;UBERON:0002346!8.74e-13!90;UBERON:0000970!1.28e-12!20;UBERON:0002104!5.41e-12!21;UBERON:0001456!5.41e-12!21;UBERON:0002203!7.58e-12!6;UBERON:0001768!7.58e-12!6;UBERON:0002037!2.48e-11!6;UBERON:0006215!2.48e-11!6;UBERON:0002200!6.55e-11!11;UBERON:0006876!6.55e-11!11;UBERON:0000020!6.62e-11!23;UBERON:0003567!7.87e-11!3;UBERON:0003838!7.87e-11!3;UBERON:0005169!7.87e-11!3;UBERON:0002321!7.87e-11!3;UBERON:0005215!7.87e-11!3;UBERON:0002303!7.87e-11!3;UBERON:0002319!7.87e-11!3;UBERON:0001032!1.98e-10!24;UBERON:0004456!1.98e-10!24;UBERON:0000033!4.66e-10!123;UBERON:0003056!5.57e-10!61;UBERON:0000153!1.82e-09!129;UBERON:0007811!1.82e-09!129;UBERON:0005743!2.24e-09!86;UBERON:0004121!1.00e-08!169;UBERON:0005085!1.54e-08!29;UBERON:0000924!1.88e-08!173;UBERON:0006601!1.88e-08!173;UBERON:0000073!2.61e-08!94;UBERON:0001016!2.61e-08!94;UBERON:0001017!2.77e-08!82;UBERON:0010077!3.94e-08!4;UBERON:0005389!3.94e-08!4;UBERON:0000484!3.94e-08!4;UBERON:0002546!3.94e-08!4;UBERON:0000965!3.94e-08!4;UBERON:0001803!3.94e-08!4;UBERON:0003073!3.94e-08!4;UBERON:0005426!3.94e-08!4;UBERON:0003296!4.38e-08!4;UBERON:0010133!4.38e-08!4;UBERON:0002680!1.03e-07!9;UBERON:0001895!1.03e-07!9;UBERON:0010092!1.03e-07!9;UBERON:0003891!7.94e-07!5;UBERON:0003586!7.94e-07!5;UBERON:0000955!8.91e-07!69;UBERON:0006238!8.91e-07!69|ontology_enrichment_uberon_v019=UBERON:0001778;8.84e-47;3!UBERON:0001775;8.84e-47;3!UBERON:0000488;2.66e-35;4!UBERON:0003567;2.75e-31;2!UBERON:0003838;2.75e-31;2!UBERON:0003586;2.75e-31;2!UBERON:0005169;2.75e-31;2!UBERON:0002321;2.75e-31;2!UBERON:0005215;2.75e-31;2!UBERON:0002303;2.75e-31;2!UBERON:0002319;2.75e-31;2!UBERON:0002203;8.45e-24;6!UBERON:0001768;8.45e-24;6!UBERON:0002200;8.45e-24;6!UBERON:0007625;9.09e-23;11!UBERON:0001801;5.63e-18;14!UBERON:0003891;3.45e-16;4!UBERON:0000019;2.45e-13;19!UBERON:0000047;2.45e-13;19!UBERON:0004088;2.45e-13;19!UBERON:0010230;2.45e-13;19!UBERON:0006876;2.71e-13;11!UBERON:0000970;1.10e-12;20!UBERON:0002104;4.27e-12;21!UBERON:0001456;4.27e-12;21!UBERON:0000020;4.53e-11;23!UBERON:0001032;1.28e-10;24!UBERON:0004456;1.28e-10;24!UBERON:0000074;1.16e-09;7!UBERON:0001229;1.16e-09;7!UBERON:0001905;7.79e-09;2!UBERON:0002757;7.79e-09;2!UBERON:0010134;7.79e-09;2!UBERON:0005408;7.79e-09;2!UBERON:0001899;7.79e-09;2!UBERON:0010371;3.26e-08;31!UBERON:0004211;5.03e-07;10!UBERON:0009773;5.03e-07;10!UBERON:0001231;5.03e-07;10!UBERON:0004810;5.03e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0001778,8.84e-47,3;UBERON:0001775,8.84e-47,3;UBERON:0000488,2.66e-35,4;UBERON:0003567,2.54e-31,2;UBERON:0003838,2.54e-31,2;UBERON:0003586,2.54e-31,2;UBERON:0005169,2.54e-31,2;UBERON:0002321,2.54e-31,2;UBERON:0005215,2.54e-31,2;UBERON:0002303,2.54e-31,2;UBERON:0002319,2.54e-31,2;UBERON:0002203,8.46e-24,6;UBERON:0001768,8.46e-24,6;UBERON:0002200,8.46e-24,6;UBERON:0007625,9.09e-23,11;UBERON:0001801,5.63e-18,14;UBERON:0003891,3.32e-16,4;UBERON:0006876,2.71e-13,11;UBERON:0000019,1.10e-12,20;UBERON:0000047,1.10e-12,20;UBERON:0010312,1.10e-12,20;UBERON:0004088,1.10e-12,20;UBERON:0010230,1.10e-12,20;UBERON:0003072,1.10e-12,20;UBERON:0004128,1.10e-12,20;UBERON:0003071,1.10e-12,20;UBERON:0000970,4.27e-12,21;UBERON:0002104,4.27e-12,21;UBERON:0001456,1.47e-11,22;UBERON:0000020,1.28e-10,24;UBERON:0001032,1.28e-10,24;UBERON:0004456,1.28e-10,24;UBERON:0010532,1.13e-09,7;UBERON:0000074,1.13e-09,7;UBERON:0001229,1.13e-09,7;UBERON:0001230,1.13e-09,7;UBERON:0003220,1.13e-09,7;UBERON:0005749,1.13e-09,7;UBERON:0004199,1.13e-09,7;UBERON:0004209,1.13e-09,7;UBERON:0004198,1.13e-09,7;UBERON:0001905,8.74e-09,2;UBERON:0002757,8.74e-09,2;UBERON:0010134,8.74e-09,2;UBERON:0005408,8.74e-09,2;UBERON:0001899,8.74e-09,2;UBERON:0003056,1.14e-08,61;UBERON:0005103,1.42e-08,8;UBERON:0000083,1.42e-08,8;UBERON:0009201,1.42e-08,8;UBERON:0006553,1.42e-08,8;UBERON:0003074,1.42e-08,8;UBERON:0003060,1.42e-08,8;UBERON:0003075,1.44e-08,82;UBERON:0007284,1.44e-08,82;UBERON:0005085,2.80e-08,31;UBERON:0002346,3.78e-08,86;UBERON:0000080,1.02e-07,9;UBERON:0002120,1.02e-07,9;UBERON:0004875,1.02e-07,9;UBERON:0005721,1.02e-07,9;UBERON:0005754,1.02e-07,9;UBERON:0007297,1.02e-07,9;UBERON:0004810,4.96e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35433163884467,0.408001382488506,0.940364164434263,4.00730381983479,0.547497700291537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7178937984854,10.1995522832779,20.202000709419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1001357621837,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633309773357254,0,0,0,0,4.87703587578935,2.50844886927427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.591659609307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.630445658393585,1.36381929150995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66018361923477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,1.00885116665647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,62.2089639966156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@RIPPLY1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=92129 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25117 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000411805_5end | |||
|coexpression_cluster_id=C114 | |||
|description=CAGE_peak_1_at_RIPPLY1_5end | |||
|id=chrX:106146562..106146577,- | |||
|ontology_enrichment_celltype=CL:0000128!1.58e-25!7;CL:0000126!1.58e-25!7;CL:0000127!1.58e-25!7;CL:0002453!1.58e-25!7;CL:0000064!3.89e-23!3;CL:0005012!3.89e-23!3;CL:0000067!3.89e-23!3;CL:0002304!3.89e-23!3;CL:0002603!4.34e-22!3;CL:0000243!8.56e-15!15;CL:0000125!8.56e-15!15;CL:0000030!8.56e-15!15;CL:0000339!8.56e-15!15;CL:0000095!3.47e-13!17;CL:0000123!3.47e-13!17;CL:0000133!2.42e-12!59;CL:0002319!3.59e-12!25;CL:0000650!7.87e-11!3;CL:1000618!7.87e-11!3;CL:1001318!7.87e-11!3;CL:0002173!7.87e-11!3;CL:1000500!7.87e-11!3;CL:0002605!1.28e-10!3;CL:0000221!5.35e-10!71;CL:0000075!3.17e-09!27;CL:0000306!3.94e-08!4;CL:0002222!3.94e-08!4;CL:0002224!3.94e-08!4;CL:0000333!2.36e-07!41;CL:0000669!7.94e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000064;8.84e-47;3!CL:0000067;8.84e-47;3!CL:0005012;8.84e-47;3!CL:0002304;8.84e-47;3!CL:0000650;2.75e-31;2!CL:1000500;2.75e-31;2!CL:1000618;2.75e-31;2!CL:1001318;2.75e-31;2!CL:0002173;2.75e-31;2!CL:0000669;3.45e-16;4!CL:1000746;1.16e-09;7!CL:1000612;1.16e-09;7!CL:0000128;1.29e-09;7!CL:0000126;1.29e-09;7!CL:0000127;1.29e-09;7!CL:0000075;1.81e-09;27!CL:0000243;1.32e-08;15!CL:0000125;1.32e-08;15!CL:0000095;9.32e-08;17!CL:0000710;1.45e-07;20!CL:1000507;5.03e-07;10!CL:1000494;5.03e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,8.84e-47,3;CL:0000067,8.84e-47,3;CL:0005012,8.84e-47,3;CL:0002304,8.84e-47,3;CL:0000650,2.54e-31,2;CL:1000500,2.54e-31,2;CL:1000618,2.54e-31,2;CL:1001318,2.54e-31,2;CL:0002173,2.54e-31,2;CL:0000669,3.32e-16,4;CL:1000746,1.13e-09,7;CL:1000612,1.13e-09,7;CL:0000128,1.35e-09,7;CL:0000126,1.35e-09,7;CL:0000127,1.35e-09,7;CL:0002453,1.35e-09,7;CL:0000075,1.81e-09,27;CL:0000133,8.58e-09,59;CL:0000243,1.30e-08,15;CL:0000125,1.30e-08,15;CL:0000030,1.30e-08,15;CL:0000339,1.30e-08,15;CL:0000095,9.21e-08,17;CL:0000123,9.21e-08,17;CL:0000710,1.45e-07,20;CL:0000221,3.39e-07,72;CL:1000507,4.96e-07,10;CL:1000494,4.96e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000339;1.32e-08;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p1@RIPPLY1 | |||
}} |
Revision as of 10:19, 14 September 2013
Short description: | p1@RIPPLY1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RIPPLY1_5end |
Coexpression cluster: | C114_teratocarcinoma_medulloblastoma_carcinosarcoma_iPS_anaplastic_acute_neuroblastoma |
Association with transcript: | 0bp_to_ENST00000411805_5end |
EntrezGene: | RIPPLY1 |
HGNC: | 25117 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 8.84e-47 | 3 |
ciliated epithelial cell | 8.84e-47 | 3 |
multi-ciliated epithelial cell | 8.84e-47 | 3 |
non-pigmented ciliary epithelial cell | 8.84e-47 | 3 |
mesangial cell | 2.54e-31 | 2 |
kidney interstitial cell | 2.54e-31 | 2 |
juxtaglomerular complex cell | 2.54e-31 | 2 |
renal interstitial pericyte | 2.54e-31 | 2 |
extraglomerular mesangial cell | 2.54e-31 | 2 |
pericyte cell | 3.32e-16 | 4 |
glomerular cell | 1.13e-09 | 7 |
kidney corpuscule cell | 1.13e-09 | 7 |
oligodendrocyte | 1.35e-09 | 7 |
macroglial cell | 1.35e-09 | 7 |
astrocyte | 1.35e-09 | 7 |
oligodendrocyte precursor cell | 1.35e-09 | 7 |
columnar/cuboidal epithelial cell | 1.81e-09 | 27 |
neurectodermal cell | 8.58e-09 | 59 |
glial cell (sensu Vertebrata) | 1.30e-08 | 15 |
glial cell | 1.30e-08 | 15 |
glioblast | 1.30e-08 | 15 |
glioblast (sensu Vertebrata) | 1.30e-08 | 15 |
neuron associated cell | 9.21e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 9.21e-08 | 17 |
neurecto-epithelial cell | 1.45e-07 | 20 |
ectodermal cell | 3.39e-07 | 72 |
kidney tubule cell | 4.96e-07 | 10 |
nephron tubule epithelial cell | 4.96e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.