Personal tools

User:Serkan/test0: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 90: Line 90:
|renderTo=container
|renderTo=container
|percentageDecimals=1
|percentageDecimals=1
}}
{{#ask:[[Category:Novel_motif]]
|?#
|format=table
|offset=0
|limit=100
|mainlabel=
|class=sortable wikitable smwtable
}}
}}


{{CategorizedChart|{{#var:motifscores}}|{{#var:categories}}|{{#var:motifids}}|,|Motif Scores, 2013|motifs}}
{{CategorizedChart|{{#var:motifscores}}|{{#var:categories}}|{{#var:motifids}}|,|Motif Scores, 2013|motifs}}

Revision as of 11:09, 28 August 2013

GRAPH

Name:{{{name}}}
Namespace:{{{namespace}}}
Definition:{{{def}}}
Xrefs:
links:
{{{xref}}}:[1]
Synonyms: {{{synonym}}}
Comments:{{{comment}}}
Alt_id: {{{alt_id}}}
Subset: {{{subset}}}
Created by:{{{created_by}}}
Creation date:{{{obo_creation_date}}}
Has quality:{{{has_quality}}}

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents NA

Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results







"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.




Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




 
1
10
100
101
102
103
104
105
106
107
108
109
11
110
111
112
113
114
115
116
117
118
119
12
120
121
122
123
124
125
126
127
128
129
13
130
131
132
133
134
135
136
137
138
139
14
140
141
142
143
144
145
146
147
148
149
15
150
151
152
153
154
155
156
157
158
159
16
160
161
162
163
164
165
166
167
168
169
17
18
19
2
20
21
22
23
24
25
26
27
28
29
3
30
31
32
33
34
35
36
... further results