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FFCP PHASE1:Hg19::chr11:18433840..18433917,+: Difference between revisions

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{{FFCP|DPIdataset=robustDPI|EntrezGene=3948|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6544|TSSclassifier=S|UniProt=P07864,F5GWS6,F5H326|association_with_transcript=0bp_to_ENST00000280704,ENST00000396215,ENST00000539369,ENST00000541669,ENST00000545848,NM_002301,NM_017448,uc001mom.3,uc001mon.3,uc001moo.3,uc009yhp.2,uc009yhq.2,uc009yhr.2_5end|coexpression_cluster_id=C1|description=CAGE_peak_1_at_LDHC_5end|id=chr11:18433840..18433917,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002322;7.82e-10;5!CL:0000148;4.90e-07;10|ontology_enrichment_celltype_v019_2=CL:0002322,3.24e-10,5;CL:0000148,4.51e-07,10;CL:0000541,4.51e-07,10|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.27e-09!115;UBERON:0001049!1.88e-09!57;UBERON:0005068!1.88e-09!57;UBERON:0006241!1.88e-09!57;UBERON:0007135!1.88e-09!57;UBERON:0002780!4.40e-09!41;UBERON:0001890!4.40e-09!41;UBERON:0006240!4.40e-09!41;UBERON:0003080!1.14e-08!42;UBERON:0002616!1.59e-08!59;UBERON:0005743!3.10e-08!86;UBERON:0002346!5.94e-08!90;UBERON:0001017!1.31e-07!82;UBERON:0000955!2.30e-07!69;UBERON:0006238!2.30e-07!69;UBERON:0003075!2.48e-07!86;UBERON:0007284!2.48e-07!86;UBERON:0003056!6.05e-07!61;UBERON:0000475!9.15e-07!365|ontology_enrichment_uberon_v019=UBERON:0003296;1.76e-08;4!UBERON:0010133;1.76e-08;4!UBERON:0000949;1.61e-07;43!UBERON:0001894;4.61e-07;7!UBERON:0001264;7.43e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0003296,4.88e-08,4;UBERON:0010133,4.88e-08,4;UBERON:0000949,2.65e-07,45;UBERON:0001264,6.97e-07,10|phase1_expression=0.726713517082227,1.92690471501885,0,0,0,0,0,0,0,0,0.697801167972428,1.09220686065086,0,0,0,0,0,0,0,0,0,0,1.14494394852423,0.684372125364421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77272670290256,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,1.70692089026603,3.2031678962881,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,3.46322773878877,2.55973222308837,0,0,0,0.403213486449465,0,0,4.87613732627923,0,0,0,0,0,0,0,0.0945348171640679,0,0,159.598003493963,0,0,0,0,0,0.476981248610684,2.28797964312051,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0.919463387397059,0.600952235626387,0,0.358779271377724,0.85422955527427,0,0.600182192168805,0.412210116953756,0,0,0,0,0.757301322732344,0.644349290496095,0,0,0,1.52604533079439,0,0,0.573609190778008,1.70763188581434,1.72288698817931,2.09149097165133,1.7622379352613,1.51392510525377,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,1.2347220339942,1.47008711385542,1.26755034821831,0,1.77236972004421,9.71218818712231,0,0,0,0,1.50793458617446,0.185176890317059,0,0,0,0.231860809950154,0.587043471179108,0,0,0,0.790204397959275,0,0,0,0.891786973732369,0.93733833986777,0,0,0,0,1.53353071666084,0,0,0,0,0,0.126995788584338,0.381988425558278,1.17217447210047,0,0,3.90445975197093,3.71574362419752,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837581326671744,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0.902838299183157,0,0,0,0.737476674166813,0,0.587403472388222,0,0,1.2942852049117,0.853820462427555,0,0,0,0.992431231275107,0.767309866440312,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0,1.16210378459959,0,0,0,0,0,0,0,0,0,1.46139224653261,0.211103257785751,0,0,0.215915916102139,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.515205058238611,0,0,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0.145016693914229,0.596586391912706,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0.42793898803392,0,0,0,0.54907405947211,0.235624804691373,0,0,0,0,0.243713489631284,0,2.04749867111979,0.848432591722276,0,0,0,0,0,1.9676842561399,0,0,0,0,0,0,1.41904425628239,0.211107635297664,0,0.379473173765715,0,1.05844323998063,0,0,0.376575203107117,0,0,0,0,0,0,0,1.66762242820452,1.64544909234478,0,0,0,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0,0,0,1.36940807419915,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,2.53204949538923,0.111308705022906,0,0,0.398495976502139,0.276283915531148,3.27512572210559,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,3.41093999985163,0,0,2.03402920234213,0.945550727071745,0.344743373241465,0,0.347249989866585,0.885741385813839,3.25610384288601,0,2.43274371848694,0.295547618953547,0.219385397153973,0,0,0.230850775511391,0,0,0.987334088507493,0.760531603454056,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,1.95879369790977,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,1.094728735294,6.65259704369105,1.45668227720456,0,0,0,0,7.9671412289681,4.14752765588989,1.32930774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{{FFCP
|DHSsupport=supported
|DPIdataset=robust
|EntrezGene=3948
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=6544
|TSSclassifier=strong
|UniProt=P07864,F5GWS6,F5H326
|association_with_transcript=0bp_to_ENST00000280704,ENST00000396215,ENST00000539369,ENST00000541669,ENST00000545848,NM_002301,NM_017448,uc001mom.3,uc001mon.3,uc001moo.3,uc009yhp.2,uc009yhq.2,uc009yhr.2_5end
|coexpression_cluster_id=C1
|description=CAGE_peak_1_at_LDHC_5end
|id=chr11:18433840..18433917,+
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019=CL:0002322;7.82e-10;5!CL:0000148;4.90e-07;10
|ontology_enrichment_celltype_v019_2=CL:0002322,3.24e-10,5;CL:0000148,4.51e-07,10;CL:0000541,4.51e-07,10
|ontology_enrichment_development_v019=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0007023!1.27e-09!115;UBERON:0001049!1.88e-09!57;UBERON:0005068!1.88e-09!57;UBERON:0006241!1.88e-09!57;UBERON:0007135!1.88e-09!57;UBERON:0002780!4.40e-09!41;UBERON:0001890!4.40e-09!41;UBERON:0006240!4.40e-09!41;UBERON:0003080!1.14e-08!42;UBERON:0002616!1.59e-08!59;UBERON:0005743!3.10e-08!86;UBERON:0002346!5.94e-08!90;UBERON:0001017!1.31e-07!82;UBERON:0000955!2.30e-07!69;UBERON:0006238!2.30e-07!69;UBERON:0003075!2.48e-07!86;UBERON:0007284!2.48e-07!86;UBERON:0003056!6.05e-07!61;UBERON:0000475!9.15e-07!365
|ontology_enrichment_uberon_v019=UBERON:0003296;1.76e-08;4!UBERON:0010133;1.76e-08;4!UBERON:0000949;1.61e-07;43!UBERON:0001894;4.61e-07;7!UBERON:0001264;7.43e-07;10
|ontology_enrichment_uberon_v019_2=UBERON:0003296,4.88e-08,4;UBERON:0010133,4.88e-08,4;UBERON:0000949,2.65e-07,45;UBERON:0001264,6.97e-07,10
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|short_description=p1@LDHC
}}

Revision as of 06:51, 11 January 2014

Short description:p1@LDHC
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_1_at_LDHC_5end
Coexpression cluster:C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate
Association with transcript: 0bp_to_ENST00000280704, ENST00000396215, ENST00000539369, ENST00000541669, ENST00000545848, NM_002301, NM_017448, uc001mom.3, uc001mon.3, uc001moo.3, uc009yhp.2, uc009yhq.2, uc009yhr.2_5end
EntrezGene:LDHC
HGNC: 6544
UniProt: P07864F5GWS6F5H326
Genome view:ZENBU


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CAGE Expression




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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data