FFCP PHASE1:Hg19::chr11:31839453..31839462,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5080 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8620 | |||
|TSSclassifier=strong | |||
|UniProt=E9PIX4 | |||
|association_with_transcript=22bp_to_ENST00000464174_5end | |||
|coexpression_cluster_id=C3140 | |||
|description=CAGE_peak_9_at_PAX6_5end | |||
|id=chr11:31839453..31839462,- | |||
|ontology_enrichment_celltype=CL:0000064!6.30e-09!3;CL:0005012!6.30e-09!3;CL:0000067!6.30e-09!3;CL:0002304!6.30e-09!3;CL:0002605!7.92e-09!3;CL:0000047!1.44e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000064;6.45e-12;3!CL:0000067;6.45e-12;3!CL:0005012;6.45e-12;3!CL:0002304;6.45e-12;3!CL:0002605;7.44e-12;3!CL:0000306;2.88e-08;4!CL:0002222;2.88e-08;4!CL:0002224;2.88e-08;4!CL:0000575;4.77e-08;2!CL:0000047;6.99e-08;2!CL:0002319;5.59e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,5.93e-12,3;CL:0000067,5.93e-12,3;CL:0005012,5.93e-12,3;CL:0002304,5.93e-12,3;CL:0002605,8.17e-12,3;CL:0000047,2.08e-10,8;CL:0000306,2.85e-08,4;CL:0002222,2.85e-08,4;CL:0002224,2.85e-08,4;CL:0000575,4.79e-08,2;CL:0002319,5.43e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.03e-12;82!UBERON:0006241;4.52e-11;3!UBERON:0003057;4.52e-11;3!UBERON:0010122;1.04e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!4.86e-98!86;UBERON:0007284!4.86e-98!86;UBERON:0001049!5.37e-97!57;UBERON:0005068!5.37e-97!57;UBERON:0006241!5.37e-97!57;UBERON:0007135!5.37e-97!57;UBERON:0001017!6.41e-94!82;UBERON:0002346!5.56e-93!90;UBERON:0005743!2.46e-92!86;UBERON:0000073!3.30e-82!94;UBERON:0001016!3.30e-82!94;UBERON:0003056!1.52e-81!61;UBERON:0002616!3.11e-81!59;UBERON:0000955!2.42e-76!69;UBERON:0006238!2.42e-76!69;UBERON:0002780!7.38e-76!41;UBERON:0001890!7.38e-76!41;UBERON:0006240!7.38e-76!41;UBERON:0003080!8.05e-74!42;UBERON:0001893!1.24e-65!34;UBERON:0002020!2.58e-65!34;UBERON:0003528!2.58e-65!34;UBERON:0002791!8.31e-64!33;UBERON:0001869!2.12e-61!32;UBERON:0000033!8.94e-61!123;UBERON:0000153!3.05e-59!129;UBERON:0007811!3.05e-59!129;UBERON:0004121!5.53e-56!169;UBERON:0000924!2.66e-54!173;UBERON:0006601!2.66e-54!173;UBERON:0000956!4.80e-51!25;UBERON:0000203!4.80e-51!25;UBERON:0002619!7.72e-44!22;UBERON:0001950!7.74e-44!20;UBERON:0007023!1.52e-37!115;UBERON:0003076!5.87e-23!15;UBERON:0003057!5.87e-23!15;UBERON:0000025!5.97e-21!194;UBERON:0000483!5.25e-19!309;UBERON:0000119!1.16e-18!312;UBERON:0000064!1.65e-18!219;UBERON:0001871!1.07e-17!7;UBERON:0004733!1.43e-16!12;UBERON:0002028!1.43e-16!12;UBERON:0007277!1.43e-16!12;UBERON:0002420!8.25e-16!9;UBERON:0007245!8.25e-16!9;UBERON:0010009!8.25e-16!9;UBERON:0010011!8.25e-16!9;UBERON:0000454!8.25e-16!9;UBERON:0002308!1.93e-15!9;UBERON:0000125!1.93e-15!9;UBERON:0004732!3.92e-15!13;UBERON:0000477!1.90e-14!286;UBERON:0000475!3.13e-14!365;UBERON:0004111!3.42e-14!241;UBERON:0001801!1.40e-13!14;UBERON:0000970!1.45e-13!20;UBERON:0000200!2.31e-13!6;UBERON:0002104!8.66e-13!21;UBERON:0002021!1.26e-12!5;UBERON:0002298!2.14e-12!8;UBERON:0009663!7.17e-12!7;UBERON:0000019!9.45e-12!19;UBERON:0000047!9.45e-12!19;UBERON:0004088!9.45e-12!19;UBERON:0003072!9.45e-12!19;UBERON:0003071!9.45e-12!19;UBERON:0004128!9.45e-12!19;UBERON:0000020!1.94e-11!23;UBERON:0001894!2.17e-11!7;UBERON:0006222!2.17e-11!7;UBERON:0000488!2.45e-11!4;UBERON:0002680!2.82e-11!9;UBERON:0001895!2.82e-11!9;UBERON:0010092!2.82e-11!9;UBERON:0001872!4.11e-11!5;UBERON:0007625!7.48e-11!11;UBERON:0001032!7.52e-11!24;UBERON:0004456!7.52e-11!24;UBERON:0001456!2.08e-10!21;UBERON:0000481!5.21e-10!347;UBERON:0000369!6.14e-10!4;UBERON:0002435!6.14e-10!4;UBERON:0000204!6.14e-10!4;UBERON:0010082!6.14e-10!4;UBERON:0000062!3.84e-09!511;UBERON:0001778!6.30e-09!3;UBERON:0001775!6.30e-09!3;UBERON:0000922!8.05e-09!612;UBERON:0002240!2.15e-08!3;UBERON:0002771!4.24e-08!3;UBERON:0005383!5.92e-08!3;UBERON:0005382!5.92e-08!3;UBERON:0000349!6.35e-08!5;UBERON:0002203!1.68e-07!6;UBERON:0001768!1.68e-07!6;UBERON:0000923!1.82e-07!604;UBERON:0005291!1.82e-07!604;UBERON:0006598!1.82e-07!604;UBERON:0002532!1.82e-07!604;UBERON:0002050!2.02e-07!605;UBERON:0005423!2.02e-07!605;UBERON:0000468!2.53e-07!659;UBERON:0001896!3.50e-07!3;UBERON:0005290!3.50e-07!3;UBERON:0010096!3.50e-07!3;UBERON:0000467!3.59e-07!625;UBERON:0006331!3.83e-07!3;UBERON:0000480!3.95e-07!626;UBERON:0005085!6.43e-07!29;UBERON:0000988!6.65e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;2.57e-48;32!UBERON:0001893;4.43e-46;34!UBERON:0001869;5.16e-43;32!UBERON:0002780;5.97e-42;41!UBERON:0001890;5.97e-42;41!UBERON:0003528;9.64e-42;34!UBERON:0002020;9.64e-42;34!UBERON:0000956;9.86e-38;25!UBERON:0000203;9.86e-38;25!UBERON:0000073;1.23e-31;53!UBERON:0002616;1.23e-31;53!UBERON:0002619;6.00e-29;22!UBERON:0001950;1.19e-27;20!UBERON:0001017;3.00e-25;75!UBERON:0000955;3.32e-23;68!UBERON:0001016;2.32e-21;83!UBERON:0000970;1.78e-19;20!UBERON:0001801;3.77e-19;14!UBERON:0002104;1.98e-18;21!UBERON:0002420;4.26e-17;9!UBERON:0007245;4.26e-17;9!UBERON:0010009;4.26e-17;9!UBERON:0010011;4.26e-17;9!UBERON:0000454;4.26e-17;9!UBERON:0002021;7.39e-17;5!UBERON:0000019;7.40e-17;19!UBERON:0000047;7.40e-17;19!UBERON:0004088;7.40e-17;19!UBERON:0010230;7.40e-17;19!UBERON:0000020;1.31e-16;23!UBERON:0009663;1.48e-16;7!UBERON:0001032;8.15e-16;24!UBERON:0004456;8.15e-16;24!UBERON:0000488;2.53e-15;4!UBERON:0007625;3.64e-15;11!UBERON:0001456;4.76e-15;21!UBERON:0000369;2.04e-13;4!UBERON:0002435;2.04e-13;4!UBERON:0000204;2.04e-13;4!UBERON:0000125;9.75e-13;9!UBERON:0002308;9.75e-13;9!UBERON:0001778;6.45e-12;3!UBERON:0001775;6.45e-12;3!UBERON:0002240;4.52e-11;3!UBERON:0005174;4.52e-11;3!UBERON:0001137;4.52e-11;3!UBERON:0005383;1.43e-10;3!UBERON:0005382;1.43e-10;3!UBERON:0002203;3.28e-10;6!UBERON:0001768;3.28e-10;6!UBERON:0002200;3.28e-10;6!UBERON:0011216;7.21e-10;132!UBERON:0010314;3.89e-09;132!UBERON:0007023;1.16e-08;114!UBERON:0010077;2.88e-08;4!UBERON:0005389;2.88e-08;4!UBERON:0000484;2.88e-08;4!UBERON:0000965;2.88e-08;4!UBERON:0001803;2.88e-08;4!UBERON:0002771;4.77e-08;2!UBERON:0003296;4.92e-08;4!UBERON:0010133;4.92e-08;4!UBERON:0001871;7.10e-08;6!UBERON:0001905;1.04e-07;2!UBERON:0001873;1.04e-07;2!UBERON:0002757;1.04e-07;2!UBERON:0010134;1.04e-07;2!UBERON:0005408;1.04e-07;2!UBERON:0001899;1.04e-07;2!UBERON:0001894;1.07e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,4.50e-74,61;UBERON:0003075,5.63e-73,82;UBERON:0007284,5.63e-73,82;UBERON:0002346,3.97e-69,86;UBERON:0001017,1.57e-68,81;UBERON:0001049,1.36e-63,56;UBERON:0005068,1.36e-63,56;UBERON:0006241,1.36e-63,56;UBERON:0007135,1.36e-63,56;UBERON:0001016,8.56e-61,89;UBERON:0002780,1.74e-59,41;UBERON:0001890,1.74e-59,41;UBERON:0003080,1.74e-59,41;UBERON:0006240,1.74e-59,41;UBERON:0010371,1.95e-55,104;UBERON:0000073,2.04e-55,53;UBERON:0002616,2.04e-55,53;UBERON:0001893,1.63e-53,34;UBERON:0002791,2.32e-52,32;UBERON:0000955,6.21e-50,68;UBERON:0006238,6.21e-50,68;UBERON:0003528,5.27e-49,34;UBERON:0002020,5.27e-49,34;UBERON:0001869,4.34e-48,32;UBERON:0004121,6.36e-46,171;UBERON:0000924,6.36e-46,171;UBERON:0006601,6.36e-46,171;UBERON:0010314,9.39e-44,132;UBERON:0000956,9.69e-38,25;UBERON:0000203,9.69e-38,25;UBERON:0002619,5.58e-29,22;UBERON:0001950,1.13e-27,20;UBERON:0011216,2.21e-23,223;UBERON:0007023,5.62e-22,114;UBERON:0001801,3.60e-19,14;UBERON:0000970,1.93e-18,21;UBERON:0002104,1.93e-18,21;UBERON:0002021,3.60e-17,5;UBERON:0002420,5.60e-17,9;UBERON:0007245,5.60e-17,9;UBERON:0010009,5.60e-17,9;UBERON:0010011,5.60e-17,9;UBERON:0000454,5.60e-17,9;UBERON:0009663,2.84e-16,7;UBERON:0000019,6.36e-16,20;UBERON:0000047,6.36e-16,20;UBERON:0010312,6.36e-16,20;UBERON:0004088,6.36e-16,20;UBERON:0010230,6.36e-16,20;UBERON:0003072,6.36e-16,20;UBERON:0004128,6.36e-16,20;UBERON:0003071,6.36e-16,20;UBERON:0000020,7.96e-16,24;UBERON:0001032,7.96e-16,24;UBERON:0004456,7.96e-16,24;UBERON:0000488,2.37e-15,4;UBERON:0007625,3.47e-15,11;UBERON:0001456,2.78e-14,22;UBERON:0000483,8.16e-14,306;UBERON:0000025,1.08e-13,192;UBERON:0000119,1.41e-13,309;UBERON:0000369,2.23e-13,4;UBERON:0002435,2.23e-13,4;UBERON:0000204,2.23e-13,4;UBERON:0010082,2.23e-13,4;UBERON:0000125,1.60e-12,9;UBERON:0002308,1.60e-12,9;UBERON:0001778,5.93e-12,3;UBERON:0001775,5.93e-12,3;UBERON:0002240,3.33e-11,3;UBERON:0005174,3.33e-11,3;UBERON:0001137,3.33e-11,3;UBERON:0005383,1.39e-10,3;UBERON:0005382,1.39e-10,3;UBERON:0002203,3.14e-10,6;UBERON:0001768,3.14e-10,6;UBERON:0002200,3.14e-10,6;UBERON:0005085,1.57e-09,31;UBERON:0004111,2.72e-09,240;UBERON:0000923,3.94e-09,560;UBERON:0010316,3.94e-09,560;UBERON:0005291,3.94e-09,560;UBERON:0006598,3.94e-09,560;UBERON:0010317,3.94e-09,560;UBERON:0002532,3.94e-09,560;UBERON:0002050,5.60e-09,564;UBERON:0000922,1.06e-08,592;UBERON:0005423,2.37e-08,581;UBERON:0010077,2.85e-08,4;UBERON:0005389,2.85e-08,4;UBERON:0000484,2.85e-08,4;UBERON:0002546,2.85e-08,4;UBERON:0000965,2.85e-08,4;UBERON:0001803,2.85e-08,4;UBERON:0003073,2.85e-08,4;UBERON:0005426,2.85e-08,4;UBERON:0003296,5.06e-08,4;UBERON:0010133,5.06e-08,4;UBERON:0002771,6.77e-08,2;UBERON:0001871,7.53e-08,6;UBERON:0003076,9.16e-08,15;UBERON:0003057,9.16e-08,15;UBERON:0001873,1.17e-07,2;UBERON:0010122,1.17e-07,2;UBERON:0001894,1.28e-07,7;UBERON:0006222,1.28e-07,7;UBERON:0001905,1.30e-07,2;UBERON:0002757,1.30e-07,2;UBERON:0010134,1.30e-07,2;UBERON:0005408,1.30e-07,2;UBERON:0001899,1.30e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,5.72471974262113,3.42186062682211,3.13856598987007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.2939497611878,3.99112915432615,4.12823492757692,0.130979075497713,2.18577172975525,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.11762744716461,0,0,0,0,0,0,1.44331342025273,11.3611796875575,1.40890433082986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,3.90419561572865,2.31986643833309,1.67516265334349,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.984685914873589,0,0,0,0,0,13.3524356362766,0,0,0,0,0,0,0,0,0,2.90799823828566,1.29875337426592,1.99613798001194,0,0,0,0,0,0,0.344743373241465,0,0.694499979733169,2.65722415744152,1.20596438625408,7.62908681585416,1.65868889896837,0.591095237907095,3.29078095730959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.22423738836234,0,1.1713222286267,0,0,0,0,1.20990716048664,0.91821828489147,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2990370390266,0,0,1.2029051231617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19048606227189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58786471611994,0,0,0,0,0,0.789744236554321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646414781807753,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,2.3184990331373,1.502291168478,0.573409195690071,1.44207766997908,0.558867626472451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21213497842769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28458450192919,2.8339315265117,1.43670473151436,1.64093091392604,6.30179240554295,1.79808856406967,2.42213468447777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0.781078098613847,1.86018116851066,1.01465296310251,1.09394961803644,0,0,0,0,1.07140367175657,2.69026977775059,0,1.59363533945908,0,0,0,0.135939465953663,0.328863867814245,0,0,0,1.57115589916002,0,0,0,0,2.57315559035963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85408217866165,0,0,0,0,0.218559560503957,0,0,0,3.53355240806901,1.78227840196252,2.5359343655004,0,0,0,0,0,0,0,0,0,1.00337708206016,0.157771562193185,0.747906392100062,2.61810414204226,1.0580536810308,0,0,0,0,0,0,0,0.801652215796681,0,0,0,0,0.829169439458779,0.517164979309476,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@PAX6 | |||
}} |
Revision as of 07:05, 11 January 2014
Short description: | p9@PAX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PAX6_5end |
Coexpression cluster: | C3140_argyrophil_Lens_Ciliary_eye_small_Astrocyte_Iris |
Association with transcript: | 22bp_to_ENST00000464174_5end |
EntrezGene: | PAX6 |
HGNC: | 8620 |
UniProt: | E9PIX4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 5.93e-12 | 3 |
ciliated epithelial cell | 5.93e-12 | 3 |
multi-ciliated epithelial cell | 5.93e-12 | 3 |
non-pigmented ciliary epithelial cell | 5.93e-12 | 3 |
astrocyte of the cerebral cortex | 8.17e-12 | 3 |
neuronal stem cell | 2.08e-10 | 8 |
crystallin accumulating cell | 2.85e-08 | 4 |
vertebrate lens cell | 2.85e-08 | 4 |
lens epithelial cell | 2.85e-08 | 4 |
corneal epithelial cell | 4.79e-08 | 2 |
neural cell | 5.43e-07 | 25 |