FFCP PHASE1:Hg19::chr11:46402744..46402777,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4192 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6972 | |||
|TSSclassifier=strong | |||
|UniProt=E9PPJ5 | |||
|association_with_transcript=0bp_to_ENST00000533952_5end | |||
|description=CAGE_peak_8_at_MDK_5end | |||
|id=chr11:46402744..46402777,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.05e-11!119;CL:0002321!3.11e-10!248;CL:0000220!4.15e-10!246;CL:0000183!1.24e-09!59;CL:0000066!3.99e-09!254;CL:0000393!6.34e-09!60;CL:0000211!6.34e-09!60;CL:0000187!9.04e-09!54;CL:0000055!3.36e-08!180;CL:0000680!4.21e-08!57;CL:0000056!4.21e-08!57;CL:0000355!4.21e-08!57 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.77e-11;15!CL:1000497;1.16e-09;17!CL:0002518;1.16e-09;17!CL:0002681;5.87e-09;12!CL:0002584;5.87e-09;12!CL:1000507;1.46e-08;10!CL:1000494;1.46e-08;10!CL:0000128;9.05e-08;7!CL:0000126;9.05e-08;7!CL:0000127;9.05e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,3.40e-11,15;CL:1000497,2.01e-09,17;CL:0002518,2.01e-09,17;CL:1000507,1.54e-08,10;CL:1000494,1.54e-08,10;CL:0002681,1.85e-08,12;CL:0002584,1.85e-08,12;CL:0000066,2.34e-08,253;CL:0000222,6.19e-08,121;CL:0000128,6.67e-08,7;CL:0000126,6.67e-08,7;CL:0000127,6.67e-08,7;CL:0002453,6.67e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!2.91e-12!138;UBERON:0005256!4.69e-12!143;UBERON:0000481!6.24e-12!347;UBERON:0000119!9.97e-12!312;UBERON:0000483!1.47e-11!309;UBERON:0003914!5.47e-10!118;UBERON:0003104!1.56e-09!238;UBERON:0009142!1.56e-09!238;UBERON:0002100!2.12e-08!216;UBERON:0002385!4.62e-08!63;UBERON:0001015!4.62e-08!63;UBERON:0000383!4.62e-08!63;UBERON:0001134!4.86e-08!61;UBERON:0002036!4.86e-08!61;UBERON:0003082!4.86e-08!61;UBERON:0000475!5.97e-08!365;UBERON:0000477!5.71e-07!286;UBERON:0000468!6.22e-07!659;UBERON:0002049!6.74e-07!79;UBERON:0007798!6.74e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.77e-11;15!UBERON:0004819;1.77e-11;15!UBERON:0001285;1.77e-11;15!UBERON:0007684;1.77e-11;15!UBERON:0000353;2.29e-09;15!UBERON:0001225;5.87e-09;12!UBERON:0008987;5.87e-09;12!UBERON:0004211;1.46e-08;10!UBERON:0009773;1.46e-08;10!UBERON:0001231;1.46e-08;10!UBERON:0004810;1.46e-08;10!UBERON:0001851;2.48e-08;15!UBERON:0007625;5.03e-07;11!UBERON:0002113;9.77e-07;24!UBERON:0011143;9.77e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,3.40e-11,15;UBERON:0009773,3.40e-11,15;UBERON:0001231,3.40e-11,15;UBERON:0001285,3.40e-11,15;UBERON:0007684,3.40e-11,15;UBERON:0004208,3.40e-11,15;UBERON:0006555,2.98e-10,16;UBERON:0004819,2.98e-10,16;UBERON:0000353,5.32e-09,15;UBERON:0004810,1.54e-08,10;UBERON:0001225,1.85e-08,12;UBERON:0008987,1.85e-08,12;UBERON:0003914,4.60e-08,117;UBERON:0001851,6.86e-08,15;UBERON:0007625,3.12e-07,11;UBERON:0000483,6.96e-07,306 | |||
|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0,1.47440361900905,2.09340350391728,2.83973783769224,5.27533956456907,1.11389717664042,0.331397375727916,1.34465029290355,1.80808358407193,2.19093027116212,0.975865597581014,1.84681587115182,2.24400760368678,2.19418305034661,2.28988789704845,1.36874425072884,1.38096903554283,0,0.0821005894499457,0,0,0,0,0,0.30120591877825,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,3.96513985737078,1.12101712596307,1.58030450865046,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,0.895037932904712,0,2.00535164254356,0.724232594804119,0,0,1.98523116044542,1.10864698731282,2.28370442802128,0.130979075497713,1.45718115317017,0,0,0,0,0,0,0,0.79504962946682,2.58070378531837,0.694281003215189,0,0.419499436209906,1.10047216776027,0.417989933073621,0.258416759169329,1.06729878806013,2.67776490211736,1.61131726843659,1.52054421143703,5.85748938115607,0.367663080345869,0.81014194788176,0.714397826272638,1.12264686313085,0.563057402416611,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0.860509862246441,1.06400514659507,0,1.06748995729705,0,0.933633106199299,0.538842688278752,0.163461903113459,0.454072282934794,0.576175924479999,1.17160715916898,0,1.1409436430889,0,0.23486899728753,0,0.280901613404497,0,0.368502951935304,0,0,0.741800787835671,0,0.718618141816238,0,0.250237039743928,0,0.438977620880838,0.919463387397059,1.05166641234618,0.226864366320042,0,1.49490172172997,0.635795703478686,0,1.23663035086127,0,1.8611685633159,0.675105328965065,1.36411807225678,0.757301322732344,0.736399189138395,1.77810662500693,1.06502877754984,0.403008392910561,0.339121184620975,0,0,0,0.365921118388786,0.662648841607426,0.813357600086629,0.725627385107593,0.504641701751257,0,0,0,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0.392442930250692,0,1.4763109092493,1.40241773803446,3.2925920906512,4.41026134156626,0,0.982827216677626,0,0,0.614942192715568,0.857839051492628,0,0,0,0.370353780634118,0.325808305310325,1.03993478527958,1.44331342025273,2.43453850447661,2.34817388471643,2.30986316417718,0,3.42457474022277,0.790204397959275,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.336393253036082,0.87192013766656,0.22001485746285,0.904902010304444,3.57656445851882,0,1.32969058292435,0,1.02882949704857,0,0.799266537048298,1.42977993658148,4.88359444852299,2.46972101034231,0,0.355391948742546,0.791951872933429,0.602878754119172,2.61460037580088,0.399891964728228,0,0,0,0.479249710983165,1.14861935834114,2.85273810081437,0,0.410952645100767,0.179060963239896,0,0,0,0,1.01637849688985,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,1.10422342547226,0,0.271265023699736,0,0,0.788512075169673,0,0.902838299183157,6.82222512167955,1.03473071292505,0,0.921845842708516,0.695068915744663,1.17480694477644,0,0,0,0,0.303127571446259,11.6504807657348,12.0956117331872,0.248107807818777,0.153461973288062,0,0.384417447767103,0,0.482561763430822,0,0,0.355123450626254,0.574890092096664,0,0.232420756919918,0.120859449591622,0.40101294060657,0.552485933615378,0.574072240823034,0.910455840033585,1.96686622439136,2.70719767744447,1.15523005656622,7.84349769176855,1.46139224653261,1.79437769117889,3.4120015221269,0.680374821106063,1.0795795805107,7.71136263451447,2.98041081298238,5.01689773854853,1.01950509218015,0,2.23874754722178,0,0,1.79515087581472,3.93617574839647,0.325378394664303,0.206082023295445,0.915694648183434,1.32015199872941,0.574265537996172,0,0,0.96670718292122,0.462145851343933,0.767518373630648,0.413509717453592,0.859361958946189,1.16013355131383,0.596586391912706,0.801288320820636,0.165284915360978,0.192190067365106,0,0.2023155617111,0,1.5740617341532,0.6970372701606,1.23213432070436,2.12922412126809,0.869932992075073,0.37064843820784,0.143124886741991,0.372158369359667,0.632758849437452,0.762520775695299,2.55897791311334,0,0.318203247925937,0,1.07923474549989,0.823611089208164,0.824686816419805,0.808729926293264,0,0.842516912477962,2.92580243453754,3.1682753652067,1.05650146756755,0.9554993798559,0.707027159768564,0,0.551365343546124,0,1.31535265576129,2.31510213706675,1.31178950409327,0.202910376962704,0.6196469961995,0.281695602532241,2.15117028306077,1.76848273823618,0.7133421029625,0.354761064070598,2.32218398827431,0.329294892959902,0,1.39973888097993,0.0962221127255121,0.670302275535787,0,0.282431402330337,0.86101074534246,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.961416640147258,0,1.22520107990516,0.557409525377156,1.00988449083511,0.497992903438899,0,0.798317485731266,0.191505370132367,0,0.649243880549111,0,0.456469358066384,0,0,1.52362600021443,0.1605880751037,0,0,0,0,0,0,0,0,1.23087398947712,0,1.6653598399891,0,0.561421621224659,0.293016358543788,0.242721043499027,0,0,0,0.296964680832639,0,0,0.140669416410513,0.890469640183247,0,3.8002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| |||
|short_description=p8@MDK | |||
}} |
Revision as of 07:32, 11 January 2014
Short description: | p8@MDK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_MDK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000533952_5end |
EntrezGene: | MDK |
HGNC: | 6972 |
UniProt: | E9PPJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 3.40e-11 | 15 |
kidney cell | 2.01e-09 | 17 |
kidney epithelial cell | 2.01e-09 | 17 |
kidney tubule cell | 1.54e-08 | 10 |
nephron tubule epithelial cell | 1.54e-08 | 10 |
kidney cortical cell | 1.85e-08 | 12 |
renal cortical epithelial cell | 1.85e-08 | 12 |
epithelial cell | 2.34e-08 | 253 |
mesodermal cell | 6.19e-08 | 121 |
oligodendrocyte | 6.67e-08 | 7 |
macroglial cell | 6.67e-08 | 7 |
astrocyte | 6.67e-08 | 7 |
oligodendrocyte precursor cell | 6.67e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 3.40e-11 | 15 |
renal tubule | 3.40e-11 | 15 |
nephron tubule | 3.40e-11 | 15 |
nephron | 3.40e-11 | 15 |
uriniferous tubule | 3.40e-11 | 15 |
nephrogenic mesenchyme | 3.40e-11 | 15 |
excretory tube | 2.98e-10 | 16 |
kidney epithelium | 2.98e-10 | 16 |
parenchyma | 5.32e-09 | 15 |
nephron tubule epithelium | 1.54e-08 | 10 |
cortex of kidney | 1.85e-08 | 12 |
renal parenchyma | 1.85e-08 | 12 |
epithelial tube | 4.60e-08 | 117 |
cortex | 6.86e-08 | 15 |
pigment epithelium of eye | 3.12e-07 | 11 |
epithelium | 6.96e-07 | 306 |