FFCP PHASE1:Hg19::chr15:28344444..28344469,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4948 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8101 | |||
|TSSclassifier=strong | |||
|UniProt=Q04671 | |||
|association_with_transcript=0bp_to_ENST00000353809,ENST00000382996,NM_000275,uc001zbh.3,uc010ayv.2_5end | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_1_at_OCA2_5end | |||
|id=chr15:28344444..28344469,- | |||
|ontology_enrichment_celltype=CL:0000147!1.34e-12!14;CL:0000325!8.97e-12!39;CL:0000148!1.65e-09!10;CL:0000541!1.65e-09!10 | |||
|ontology_enrichment_celltype_v019=CL:0000147;4.22e-16;14!CL:0000148;7.17e-15;10!CL:0002567;2.16e-10;3!CL:0002605;9.34e-10;3!CL:0000710;1.28e-08;20!CL:0000075;1.94e-07;27!CL:0000128;8.23e-07;7!CL:0000126;8.23e-07;7!CL:0000127;8.23e-07;7!CL:0000149;8.54e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,5.65e-16,14;CL:0000148,7.22e-15,10;CL:0000541,7.22e-15,10;CL:0002567,2.17e-10,3;CL:0002605,9.79e-10,3;CL:0000710,1.16e-08,20;CL:0000333,1.47e-07,41;CL:0000075,1.69e-07,27;CL:0000128,8.78e-07,7;CL:0000126,8.78e-07,7;CL:0000127,8.78e-07,7;CL:0002453,8.78e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;3.45e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.46e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002346!1.88e-14!90;UBERON:0005743!1.23e-12!86;UBERON:0003075!1.45e-12!86;UBERON:0007284!1.45e-12!86;UBERON:0007023!2.70e-12!115;UBERON:0000924!3.32e-12!173;UBERON:0006601!3.32e-12!173;UBERON:0000153!2.02e-11!129;UBERON:0007811!2.02e-11!129;UBERON:0000073!2.03e-11!94;UBERON:0001016!2.03e-11!94;UBERON:0004121!9.51e-11!169;UBERON:0001017!2.34e-10!82;UBERON:0000033!2.49e-10!123;UBERON:0003056!8.64e-10!61;UBERON:0000955!1.36e-09!69;UBERON:0006238!1.36e-09!69;UBERON:0002616!4.44e-08!59;UBERON:0000020!4.61e-08!23;UBERON:0000970!1.15e-07!20;UBERON:0001032!1.56e-07!24;UBERON:0004456!1.56e-07!24;UBERON:0000063!2.10e-07!97;UBERON:0001049!3.05e-07!57;UBERON:0005068!3.05e-07!57;UBERON:0006241!3.05e-07!57;UBERON:0007135!3.05e-07!57;UBERON:0002104!4.17e-07!21;UBERON:0001456!7.33e-07!21;UBERON:0000019!8.23e-07!19;UBERON:0000047!8.23e-07!19;UBERON:0004088!8.23e-07!19;UBERON:0003072!8.23e-07!19;UBERON:0003071!8.23e-07!19;UBERON:0004128!8.23e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;2.77e-09;3!UBERON:0005290;2.77e-09;3!UBERON:0000922;3.90e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,2.01e-09,3;UBERON:0005290,2.01e-09,3;UBERON:0010096,2.01e-09,3;UBERON:0002346,1.31e-07,86;UBERON:0003075,3.41e-07,82;UBERON:0007284,3.41e-07,82;UBERON:0010371,3.68e-07,104 | |||
|phase1_expression=0.726713517082227,0.214100523890983,0.563817616383885,1.0007329835313,0.893922188854576,0.872338524100369,0,0.631719873426831,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0.123121058076788,0,1.25381888591235,7.44213566540748,14.23494020758,3.38965126905968,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,1.55210578223795,0.790513071238134,0.654895377488563,0,0.370784442784429,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0,0.348581828608555,0.518305275076852,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8448265781467,0.343135620597051,0.109750285408626,0,0.100528972411631,0,0,0,0,0.579652024875384,1.52631302506568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,346.127021786613,404.907731091774,594.292457354938,342.14489204541,167.711640599121,185.011323631853,326.12795963149,0,0,0,0,0,0,0,0,0,0,0,0,7.5967024754802,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0.502548796003046,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.391602314925481,0.686286847621712,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0,0,0.725156697549733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02580050046556,1.31205858279882,0.976135183992909,0.206082023295445,0,0,0,0,0,0.580024309752732,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,1.48863347743867,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982490410131212,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.41837027607914,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0.994147647766298,0,0,0,18.3679105071354,3.38721580026819,0.828851746593443,3.77899121781414,0,0,0,0,0,0,0.394573622547734,0,0,0.969332746095218,0.0927680981618513,5.98841394003583,0,0,0,0,0,0,2.06846023944879,0,0.520874984799877,0,0,0,0,0,1.09692698576986,0,0,1.61595542857974,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0.569261198172555,0,0,0,0.424059214301822,0.216388639742091,0,0.0884575645033392,0,0,0,0,2.29163852134302,0,0.234264445725339,0,0.391329237864179,0,0,1.20990716048664,2.44858209304392,1.45329133145522,0.450970258243478,0.103688191397247,0,0,0,0,0,0,0.173559738335131,0,0,1.22308667769421,0,0,0,0,1.55182426381471,0,6.77942222341597,0,0,0.316553979779393,0,0,0.213452994739353,1.39866726707491,0,0,4.46146994441108,0,0.124252535565433,0.235694034616795,0,0,0,0.288950589901519,0,0,0,0,0,1.11712960508902,1.14580212005842,0,0,0,0,0.134366944973453,0,1.16495949527454,0,0,0,0.196854963029498,0,0,0.681017030557878,0.160753148465019,0,0.415440338029185,0,0.77380195455795,0.425246896606173,0,0.157611414598396,2.62272940674991,0.316801009558219,0,0,0,0,0.76280561296425,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0.171086837884329,0,0.747511887973863,3.45849471219265,0,0.496166021811951,0,0,0,0,0.2506898940227,0,0,0,0,0,0,9.17454713104114,4.21530395840039,1.67660287941735,15.3566984779216,0,5.45936823149932,93.3471640692043,0,0,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.138258436151731,3.3126252502696,0.930053882193542,1.63565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0.33946505990805,4.25149840203366,0.247871528518004,0.558644917973244,0,0.23658523500376,14.4102734691385,0,0.3062454773532,0.128458450192919,0,0,0,2.01657356977374,0,0.161475645631851,0,0,0.471878893390961,0,0,0,0,5.17182177502314,0.150420656698515,0,0,0,0,0,0.472763092328763,0,0,0.380494861163441,3.82882366312754,0.548257766857182,0.992422356778588,0.175871244359621,0,0.535701835878287,0,0,0.455324382702595,0.79832133146375,0,0,0.0679697329768317,0.131545547125698,0,0,0.549451649953598,0,0.560544326627578,2.73947616152849,0,0,27.9473287730726,0.94808167039636,0,0,0,0,0,0,0.860454717640555,0,0,1.69354820076372,0.22910686854405,0.31020638566432,0,0,0,0,0,0.102662806856247,1.1598144313382,1.94284397223656,0,0.397901550322736,0.237840181555137,0.45178432815584,0.659643100472575,0.452888530700021,0,3.27839340755936,0,0,0,0,0,0.4226557275834,0,0.469919589899268,1.4180735354187,0,0,0,0,0,1.37618785021362,0,2.68211655728414,0.543931921527318,3.49080552272302,1.0580536810308,0,0,0,0.126166424835079,1.20192129160065,3.29416102629736,0.203977659483963,0,0.551369397209069,0.250707539292375,0.909344378618873,1.33982065078089,0,0,1.49263787330687,0.952257725854961,0.0645889098360061,0.186224142887574,0,2.16400338145761,0.60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| |||
|short_description=p1@OCA2 | |||
}} |
Revision as of 22:32, 11 January 2014
Short description: | p1@OCA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_OCA2_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000353809, ENST00000382996, NM_000275, uc001zbh.3, uc010ayv.2_5end |
EntrezGene: | OCA2 |
HGNC: | 8101 |
UniProt: | Q04671 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 5.65e-16 | 14 |
melanocyte | 7.22e-15 | 10 |
melanoblast | 7.22e-15 | 10 |
light melanocyte | 2.17e-10 | 3 |
astrocyte of the cerebral cortex | 9.79e-10 | 3 |
neurecto-epithelial cell | 1.16e-08 | 20 |
migratory neural crest cell | 1.47e-07 | 41 |
columnar/cuboidal epithelial cell | 1.69e-07 | 27 |
oligodendrocyte | 8.78e-07 | 7 |
macroglial cell | 8.78e-07 | 7 |
astrocyte | 8.78e-07 | 7 |
oligodendrocyte precursor cell | 8.78e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 2.01e-09 | 3 |
myelencephalon | 2.01e-09 | 3 |
future myelencephalon | 2.01e-09 | 3 |
neurectoderm | 1.31e-07 | 86 |
neural plate | 3.41e-07 | 82 |
presumptive neural plate | 3.41e-07 | 82 |
ecto-epithelium | 3.68e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.46e-07 | 2 |