FFCP PHASE1:Hg19::chr17:48262965..48262976,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt=P02452 | |||
|association_with_transcript=-25bp_to_M32790,M32798_5end | |||
|coexpression_cluster_id=C1786 | |||
|description=CAGE_peak_38_at_COL1A1_5end | |||
|id=chr17:48262965..48262976,- | |||
|ontology_enrichment_celltype=CL:0000055!1.94e-35!180;CL:0000057!3.21e-22!75;CL:0000183!1.74e-15!59;CL:0000680!3.60e-15!57;CL:0000056!3.60e-15!57;CL:0000355!3.60e-15!57;CL:0000187!1.71e-14!54;CL:0000393!5.16e-12!60;CL:0000211!5.16e-12!60;CL:0000192!2.52e-10!42;CL:0000514!2.52e-10!42;CL:0000048!4.74e-09!430;CL:0000723!3.02e-08!436;CL:0002334!4.11e-08!12;CL:0000034!1.99e-07!444;CL:0002620!2.15e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.89e-10;12!CL:0000134;4.25e-09;55!CL:0000048;4.89e-08;58!CL:0002320;7.12e-08;188!CL:0000723;8.22e-08;61!CL:0000499;3.69e-07;28!CL:0002570;3.86e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.35e-18,76;CL:0000048,2.24e-12,427;CL:0000723,1.17e-11,433;CL:0000034,9.52e-11,441;CL:0002334,2.88e-10,12;CL:0000680,4.88e-10,58;CL:0000056,4.88e-10,58;CL:0000355,4.88e-10,58;CL:0000187,1.19e-09,55;CL:0000393,8.71e-08,61;CL:0000211,8.71e-08,61;CL:0002320,1.28e-07,361;CL:0000499,3.02e-07,28;CL:0002570,3.78e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!4.92e-16!63;UBERON:0001015!4.92e-16!63;UBERON:0000383!4.92e-16!63;UBERON:0001134!5.42e-16!61;UBERON:0002036!5.42e-16!61;UBERON:0003082!5.42e-16!61;UBERON:0000914!8.55e-15!83;UBERON:0002329!8.55e-15!83;UBERON:0003077!8.55e-15!83;UBERON:0003059!8.55e-15!83;UBERON:0007282!8.55e-15!83;UBERON:0009618!8.55e-15!83;UBERON:0007285!8.55e-15!83;UBERON:0004290!2.13e-14!70;UBERON:0000486!5.40e-11!82;UBERON:0005256!3.17e-10!143;UBERON:0002100!3.49e-07!216;UBERON:0001013!4.23e-07!14;UBERON:0000948!5.41e-07!24;UBERON:0005498!5.41e-07!24;UBERON:0004140!5.41e-07!24;UBERON:0009881!5.41e-07!24;UBERON:0004141!5.41e-07!24;UBERON:0003084!5.41e-07!24;UBERON:0007005!5.41e-07!24;UBERON:0004139!5.41e-07!24;UBERON:0004291!5.41e-07!24;UBERON:0004872!9.50e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.57e-08;198!UBERON:0003104;2.20e-07;7!UBERON:0009142;2.20e-07;7!UBERON:0001013;2.45e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.04e-10,62;UBERON:0002036,1.04e-10,62;UBERON:0003082,1.04e-10,62;UBERON:0002385,4.96e-10,64;UBERON:0001015,4.96e-10,64;UBERON:0000383,4.96e-10,64;UBERON:0007524,5.89e-09,73;UBERON:0002329,1.15e-08,71;UBERON:0003059,1.15e-08,71;UBERON:0007282,1.15e-08,71;UBERON:0004290,1.15e-08,71;UBERON:0009618,1.15e-08,71;UBERON:0007503,1.75e-08,78;UBERON:0003077,2.13e-08,72;UBERON:0007285,2.13e-08,72;UBERON:0003104,2.24e-08,160;UBERON:0009142,2.24e-08,160;UBERON:0002384,3.12e-08,371;UBERON:0001013,2.07e-07,14;UBERON:0005256,3.90e-07,122;UBERON:0000486,4.07e-07,83 | |||
|phase1_expression=3.99692434395225,3.63970890614671,6.62485699251064,1.0007329835313,1.34088328328186,1.74467704820074,15.1979926900986,1.26343974685366,0.261185628199839,0.491467873003018,0,0.655324116390517,4.22027165165526,1.11389717664042,1.98838425436749,1.34465029290355,1.20538905604795,0,1.95173119516203,0.984968464614303,1.42800483870977,2.82109249330279,0.572471974262113,0.273748850145768,0.376627918784408,0,0.0821005894499457,0,0,0,1.08371286321253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,51.199441925932,2.01210257911091,3.06870148424473,2.1686349143074,4.01070328508712,5.64901423947212,5.5670016293577,8.75942766544745,0.567208902984407,2.21729397462564,1.66886092816939,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3819061161174,2.02608818663328,1.58891016975863,8.60509862246441,1.77334191099179,4.48542080113846,1.06748995729705,11.5933747756065,0.622422070799533,0.67355336034844,0.326923806226917,3.93529311876822,10.94734256512,0.234321431833797,0.312160076830321,0,0.298897361103602,0,0.161872944368132,0.140450806702248,0.61246251376468,0.982674538494144,0.413303124703062,3.56400857184616,9.89067717114228,0,7.18618141816238,0,0.625592599359821,0,2.63386572528503,5.82326812018137,4.5071417671979,0.907457465280168,5.74046834204358,6.62027905337559,2.7551147150743,4.20127534518163,1.44273540933814,4.3798891807757,5.76962254627928,7.59493495085698,2.72823614451356,3.02920529092937,4.78659472939957,1.77810662500693,3.55009592516614,1.20902517873168,1.69560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,2.57296375277154,0,2.78620756819187,0.721879481669586,0,0,0,0,0,0,0,0,0.38474715694639,0,0,7.8199062152966,1.47008711385542,0,0,0,0,0,1.3725424823882,0,0,0,0,0.651616610620649,1.03993478527958,0,0.115930404975077,2.7003999674239,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0.514137463516618,0,0,0.897048674762886,0.87192013766656,1.9067954313447,4.39523833576444,7.15312891703765,5.071816515336,4.78688609852767,1.04007436911366,0.771622122786426,0,1.0656887160644,10.5803715307029,15.1934049509604,4.93944202068461,2.28015329005615,6.75244702610837,2.37585561880029,0.904318131178758,0,0.599837947092342,0,0,0,5.5113716763064,9.18895486672911,5.70547620162874,1.44781306667579,1.84928690295345,0.179060963239896,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,1.71768088406796,4.50153468953709,0.813795071099207,24.3325907991044,42.1092413561302,17.9780753138686,9.83987885938791,3.00946099727719,4.5481500811197,3.10419213877515,4.64957918974806,3.13427586520895,1.12948698808508,3.13281851940385,4.46086450954113,0,0,0,0,9.98612637062982,2.41912234663744,6.69891081110698,6.29194090481056,12.9103643439214,9.73857534343327,6.14048698880044,16.407099956648,1.48418066444991,1.85051632563187,7.10246901252508,2.05317890034523,3.11552657510173,1.74315567689939,0,0,0,2.75554675595056,2.54927635209404,3.93373244878272,0,0,0,0,0.105551628892876,0,0,1.0795795805107,0,1.35473218771926,1.50506932156456,0,0,0.895499018888713,0,0,0,0.656029291399411,0,0,1.19040304263846,0.742585499285292,0,0,8.03419649220798,1.7400729292582,0.308097234229289,0.921022048356777,1.24052915236078,1.6113036730241,1.45016693914229,0.426133137080504,8.1019152438531,0.165284915360978,0.768760269460425,0.638063562472921,0.10115778085555,0.929691098594572,14.4813679542094,0,2.15623506123262,0.532306030317022,0.869932992075073,0.55597265731176,0.143124886741991,0.744316738719335,0.632758849437452,4.5751246541718,1.27948895655667,10.2705357128141,0.318203247925937,3.13979456079692,2.51821440616641,4.11805544604082,1.7671860351853,0.404364963146632,1.58510321173008,0,2.43816869544795,1.21856744815642,0,1.22849920267187,5.37340641424108,2.26016233240486,5.51365343546124,0.66343897524122,0.438450885253763,3.47265320560013,8.52663177660623,1.62328301570163,0.92947049429925,1.40847801266121,1.86434757865267,2.94747123039363,1.426684205925,0.709522128141196,4.64436797654861,2.96365403663912,1.13841952129715,1.39973888097993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.890894042497916,0,0,0,0,0,0,1.19548792950642,1.38141957765574,0,0,0,6.22079175323615,0,0,0,0.789147245095469,0,2.22273980289274,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0,0,5.00176680274681,0.113942055847001,0,0.0897576444097721,0,0,1.28236630762607,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,4.27721101453538,0,0,0,0.067401132980677,44.1417706014334,0,0,0,0,1.18375320854817,3.62972148145992,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0.51595809741485,0,0,0,0.0969890164884194,0.0882561266915003,16.4965940769789,0.137041924646751,0,0,0,0.2404764607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| |||
|short_description=p38@COL1A1 | |||
}} |
Revision as of 16:11, 20 January 2014
Short description: | p38@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_38_at_COL1A1_5end |
Coexpression cluster: | C1786_diaphragm_Olfactory_Cardiac_hepatic_tridermal_umbilical_sacrococcigeal |
Association with transcript: | -25bp_to_M32790, M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.35e-18 | 76 |
multi fate stem cell | 2.24e-12 | 427 |
somatic stem cell | 1.17e-11 | 433 |
stem cell | 9.52e-11 | 441 |
preadipocyte | 2.88e-10 | 12 |
muscle precursor cell | 4.88e-10 | 58 |
myoblast | 4.88e-10 | 58 |
multi-potent skeletal muscle stem cell | 4.88e-10 | 58 |
muscle cell | 1.19e-09 | 55 |
electrically responsive cell | 8.71e-08 | 61 |
electrically active cell | 8.71e-08 | 61 |
connective tissue cell | 1.28e-07 | 361 |
stromal cell | 3.02e-07 | 28 |
mesenchymal stem cell of adipose | 3.78e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.04e-10 | 62 |
striated muscle tissue | 1.04e-10 | 62 |
myotome | 1.04e-10 | 62 |
muscle tissue | 4.96e-10 | 64 |
musculature | 4.96e-10 | 64 |
musculature of body | 4.96e-10 | 64 |
dense mesenchyme tissue | 5.89e-09 | 73 |
somite | 1.15e-08 | 71 |
presomitic mesoderm | 1.15e-08 | 71 |
presumptive segmental plate | 1.15e-08 | 71 |
dermomyotome | 1.15e-08 | 71 |
trunk paraxial mesoderm | 1.15e-08 | 71 |
epithelial vesicle | 1.75e-08 | 78 |
paraxial mesoderm | 2.13e-08 | 72 |
presumptive paraxial mesoderm | 2.13e-08 | 72 |
mesenchyme | 2.24e-08 | 160 |
entire embryonic mesenchyme | 2.24e-08 | 160 |
connective tissue | 3.12e-08 | 371 |
adipose tissue | 2.07e-07 | 14 |
trunk mesenchyme | 3.90e-07 | 122 |
multilaminar epithelium | 4.07e-07 | 83 |