FFCP PHASE1:Hg19::chr17:9804379..9804392,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5957 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9937 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=126bp_to_uc002gmf.1_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_3_at_RCVRN_5end | |||
|id=chr17:9804379..9804392,- | |||
|ontology_enrichment_celltype=CL:0002057!2.44e-10!42;CL:0000860!1.33e-09!45 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.12e-17;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!9.37e-21!2;UBERON:0002757!9.37e-21!2;UBERON:0010134!9.37e-21!2;UBERON:0002784!9.37e-21!2;UBERON:0005408!9.37e-21!2;UBERON:0001899!9.37e-21!2;UBERON:0003296!7.47e-11!4;UBERON:0010133!7.47e-11!4;UBERON:0003112!1.10e-10!1;UBERON:0000032!1.10e-10!1;UBERON:0005253!1.10e-10!1;UBERON:0003128!1.10e-10!1;UBERON:0002241!1.10e-10!1;UBERON:0001703!1.10e-10!1;UBERON:0004761!1.10e-10!1;UBERON:0009617!1.10e-10!1;UBERON:0000966!8.67e-09!5;UBERON:0005388!8.67e-09!5;UBERON:0001802!8.67e-09!5;UBERON:0000970!4.60e-08!20;UBERON:0002104!1.10e-07!21;UBERON:0000020!5.00e-07!23;UBERON:0003056!6.81e-07!61;UBERON:0001032!9.72e-07!24;UBERON:0004456!9.72e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.55e-98;2!UBERON:0002757;1.55e-98;2!UBERON:0010134;1.55e-98;2!UBERON:0005408;1.55e-98;2!UBERON:0001899;1.55e-98;2!UBERON:0003296;5.14e-50;4!UBERON:0010133;5.14e-50;4!UBERON:0002784;5.14e-50;4!UBERON:0001894;3.65e-29;7!UBERON:0000966;3.60e-11;5!UBERON:0005388;3.60e-11;5!UBERON:0001802;3.60e-11;5!UBERON:0000970;5.70e-11;20!UBERON:0002104;1.69e-10;21!UBERON:0000020;1.12e-09;23!UBERON:0001032;2.56e-09;24!UBERON:0004456;2.56e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.55e-98,2;UBERON:0002757,1.55e-98,2;UBERON:0010134,1.55e-98,2;UBERON:0005408,1.55e-98,2;UBERON:0001899,1.55e-98,2;UBERON:0003296,5.14e-50,4;UBERON:0010133,5.14e-50,4;UBERON:0002784,5.14e-50,4;UBERON:0001894,3.65e-29,7;UBERON:0006222,3.65e-29,7;UBERON:0000970,1.69e-10,21;UBERON:0002104,1.69e-10,21;UBERON:0000966,1.57e-09,6;UBERON:0005388,1.57e-09,6;UBERON:0001802,1.57e-09,6;UBERON:0000020,2.56e-09,24;UBERON:0001032,2.56e-09,24;UBERON:0004456,2.56e-09,24;UBERON:0003056,4.61e-08,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.7726103773737,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3211422252006,6.38939072215766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.57517044577919,0.790068058663633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329821550236287,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@RCVRN | |||
}} |
Revision as of 13:53, 20 January 2014
Short description: | p3@RCVRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RCVRN_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 126bp_to_uc002gmf.1_5end |
EntrezGene: | RCVRN |
HGNC: | 9937 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.55e-98 | 2 |
regional part of epithalamus | 1.55e-98 | 2 |
secretory circumventricular organ | 1.55e-98 | 2 |
circumventricular organ | 1.55e-98 | 2 |
epithalamus | 1.55e-98 | 2 |
gland of diencephalon | 5.14e-50 | 4 |
neuroendocrine gland | 5.14e-50 | 4 |
regional part of diencephalon | 5.14e-50 | 4 |
diencephalon | 3.65e-29 | 7 |
future diencephalon | 3.65e-29 | 7 |
eye | 1.69e-10 | 21 |
visual system | 1.69e-10 | 21 |
retina | 1.57e-09 | 6 |
photoreceptor array | 1.57e-09 | 6 |
posterior segment of eyeball | 1.57e-09 | 6 |
sense organ | 2.56e-09 | 24 |
sensory system | 2.56e-09 | 24 |
entire sense organ system | 2.56e-09 | 24 |
pre-chordal neural plate | 4.61e-08 | 61 |