FFCP PHASE1:Hg19::chr18:3448730..3448744,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3718 | |||
|description=CAGE_peak_at_chr18:3448730..3448744,+ | |||
|id=chr18:3448730..3448744,+ | |||
|ontology_enrichment_celltype=CL:0000860!2.60e-27!45;CL:0002057!2.78e-26!42;CL:0000766!2.03e-21!76;CL:0000839!2.35e-19!70;CL:0000557!2.77e-19!71;CL:0000738!1.70e-18!140;CL:0002009!1.35e-17!65;CL:0002194!1.95e-17!63;CL:0000576!1.95e-17!63;CL:0000040!1.95e-17!63;CL:0000559!1.95e-17!63;CL:0000763!2.59e-17!112;CL:0000049!2.59e-17!112;CL:0000037!3.04e-16!172;CL:0000566!3.04e-16!172;CL:0000034!1.57e-15!444;CL:0002031!1.73e-15!124;CL:0000063!1.91e-15!578;CL:0000012!3.96e-15!682;CL:0002032!3.98e-15!165;CL:0000837!3.98e-15!165;CL:0000134!5.14e-15!358;CL:0000723!1.18e-14!436;CL:0000003!2.10e-14!722;CL:0000048!2.61e-14!430;CL:0002087!4.77e-14!119;CL:0002320!4.81e-14!365;CL:0000548!6.64e-14!679;CL:0000004!6.64e-14!679;CL:0000255!6.64e-14!679;CL:0000988!1.54e-13!182;CL:0000219!2.24e-12!390;CL:0000144!3.07e-12!625;CL:0002371!2.42e-11!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.72e-32;33!CL:0002057;3.72e-32;33!CL:0000576;1.04e-22;48!CL:0000473;2.42e-21;39!CL:0000234;2.42e-21;39!CL:0000766;1.86e-16;69!CL:0002087;3.54e-09;104!CL:0000763;5.20e-09;100!CL:0002393;5.12e-08;6!CL:0002397;5.12e-08;6!CL:0000738;8.91e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.24e-44,42;CL:0002057,8.24e-44,42;CL:0000473,4.43e-36,48;CL:0000234,4.43e-36,48;CL:0000766,3.90e-32,72;CL:0000557,8.06e-29,67;CL:0000738,8.86e-29,136;CL:0000839,3.90e-28,66;CL:0002009,6.56e-27,61;CL:0002194,1.15e-26,59;CL:0000576,1.15e-26,59;CL:0000040,1.15e-26,59;CL:0000559,1.15e-26,59;CL:0000037,1.08e-24,168;CL:0002031,1.89e-24,120;CL:0000763,3.31e-24,108;CL:0000049,3.31e-24,108;CL:0002087,1.03e-23,115;CL:0002032,2.00e-23,161;CL:0000837,2.00e-23,161;CL:0000988,5.27e-22,177;CL:0000134,1.60e-17,354;CL:0002320,6.74e-17,361;CL:0000034,1.59e-15,441;CL:0000048,4.18e-15,427;CL:0000723,6.20e-15,433;CL:0000219,2.94e-14,386;CL:0002393,5.26e-10,9;CL:0002397,5.26e-10,9 | |||
|ontology_enrichment_development_v019=CL:0002057;8.96e-32;42!CL:0000049;1.34e-07;108 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.67e-17!80;UBERON:0001474!2.35e-16!86;UBERON:0002384!6.88e-13!375;UBERON:0004765!2.41e-12!101;UBERON:0001434!2.41e-12!101;UBERON:0002390!5.51e-11!102;UBERON:0003061!5.51e-11!102;UBERON:0002405!1.52e-10!115;UBERON:0002204!1.75e-08!167;UBERON:0003081!2.03e-08!216;UBERON:0002193!2.94e-08!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.18e-26,76;UBERON:0001474,9.41e-26,82;UBERON:0004765,1.32e-22,90;UBERON:0002390,2.19e-20,98;UBERON:0003061,2.19e-20,98;UBERON:0002405,1.99e-19,93;UBERON:0001434,1.85e-18,100;UBERON:0002193,9.26e-17,108;UBERON:0002384,2.75e-16,371;UBERON:0003081,9.49e-13,203;UBERON:0002204,1.21e-11,167 | |||
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| |||
|short_description=p@chr18:3448730..3448744,+ | |||
}} |
Revision as of 18:21, 20 January 2014
Short description: | p@chr18:3448730..3448744, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:3448730..3448744, + |
Coexpression cluster: | C3718_CD14_Mast_Natural_Eosinophils_Basophils_CD8_CD19 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.24e-44 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.24e-44 | 42 |
defensive cell | 4.43e-36 | 48 |
phagocyte | 4.43e-36 | 48 |
myeloid leukocyte | 3.90e-32 | 72 |
granulocyte monocyte progenitor cell | 8.06e-29 | 67 |
leukocyte | 8.86e-29 | 136 |
myeloid lineage restricted progenitor cell | 3.90e-28 | 66 |
macrophage dendritic cell progenitor | 6.56e-27 | 61 |
monopoietic cell | 1.15e-26 | 59 |
monocyte | 1.15e-26 | 59 |
monoblast | 1.15e-26 | 59 |
promonocyte | 1.15e-26 | 59 |
hematopoietic stem cell | 1.08e-24 | 168 |
hematopoietic lineage restricted progenitor cell | 1.89e-24 | 120 |
myeloid cell | 3.31e-24 | 108 |
common myeloid progenitor | 3.31e-24 | 108 |
nongranular leukocyte | 1.03e-23 | 115 |
hematopoietic oligopotent progenitor cell | 2.00e-23 | 161 |
hematopoietic multipotent progenitor cell | 2.00e-23 | 161 |
hematopoietic cell | 5.27e-22 | 177 |
mesenchymal cell | 1.60e-17 | 354 |
connective tissue cell | 6.74e-17 | 361 |
stem cell | 1.59e-15 | 441 |
multi fate stem cell | 4.18e-15 | 427 |
somatic stem cell | 6.20e-15 | 433 |
motile cell | 2.94e-14 | 386 |
intermediate monocyte | 5.26e-10 | 9 |
CD14-positive, CD16-positive monocyte | 5.26e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.18e-26 | 76 |
bone element | 9.41e-26 | 82 |
skeletal element | 1.32e-22 | 90 |
hematopoietic system | 2.19e-20 | 98 |
blood island | 2.19e-20 | 98 |
immune system | 1.99e-19 | 93 |
skeletal system | 1.85e-18 | 100 |
hemolymphoid system | 9.26e-17 | 108 |
connective tissue | 2.75e-16 | 371 |
lateral plate mesoderm | 9.49e-13 | 203 |
musculoskeletal system | 1.21e-11 | 167 |