FFCP PHASE1:Hg19::chr1:154832342..154832360,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3782 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6292 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UGI6 | |||
|association_with_transcript=-4bp_to_NM_170782,uc001ffo.2_5end | |||
|coexpression_cluster_id=C1464 | |||
|description=CAGE_peak_6_at_KCNN3_5end | |||
|id=chr1:154832342..154832360,- | |||
|ontology_enrichment_celltype=CL:0000945!5.01e-41!24;CL:0000826!5.01e-41!24;CL:0000542!1.93e-20!53;CL:0000051!1.93e-20!53;CL:0000838!9.95e-19!52;CL:0000236!1.16e-11!14;CL:0000817!1.38e-11!3;CL:0000785!1.50e-08!2;CL:0000955!1.50e-08!2;CL:0000818!1.50e-08!2;CL:0000954!1.50e-08!2;CL:0000816!1.50e-08!2;CL:0002087!3.12e-08!119;CL:0002031!7.23e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000945;6.77e-57;24!CL:0000542;1.11e-15;53!CL:0000785;1.06e-09;1!CL:0000819;1.06e-09;1!CL:0000946;1.31e-09;1!CL:0000786;1.31e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,7.10e-57,24;CL:0000826,7.10e-57,24;CL:0000838,4.08e-29,52;CL:0000542,1.60e-28,53;CL:0000051,1.60e-28,53;CL:0000785,1.46e-17,2;CL:0000955,1.46e-17,2;CL:0000818,1.46e-17,2;CL:0000954,1.46e-17,2;CL:0000816,1.46e-17,2;CL:0000817,4.99e-12,3;CL:0002087,1.05e-11,115;CL:0002031,4.03e-11,120;CL:0000819,1.06e-09,1;CL:0000946,1.36e-09,1;CL:0000786,1.36e-09,1;CL:0000980,1.36e-09,1;CL:0000738,1.56e-09,136;CL:0002032,1.11e-07,161;CL:0000837,1.11e-07,161;CL:0000037,2.91e-07,168;CL:0000988,9.02e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000954;1.40e-17;2!CL:0000051;1.11e-15;53!UBERON:0001045;1.06e-09;1 | |||
|ontology_enrichment_disease=DOID:0060058!2.10e-13!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.78e-30;10!DOID:630;5.79e-10;1!DOID:0050177;5.79e-10;1!DOID:0050427;5.79e-10;1!DOID:4960;8.53e-10;1!DOID:0070004;8.53e-10;1!DOID:0060073;1.06e-09;1!DOID:8675;1.06e-09;1!DOID:2355;1.99e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.60e-30,10;DOID:630,5.79e-10,1;DOID:0050177,5.79e-10,1;DOID:0050427,5.79e-10,1;DOID:4960,8.17e-10,1;DOID:0070004,8.17e-10,1;DOID:0060073,1.06e-09,1;DOID:8675,1.06e-09,1;DOID:2531,1.56e-09,51;DOID:0060083,1.56e-09,51;DOID:2355,1.76e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.41e-16!115;UBERON:0004177!3.44e-08!7;UBERON:0001829!4.43e-08!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.47e-12;3!UBERON:0002372;1.06e-09;1!UBERON:0001154;1.06e-09;1!UBERON:0001153;1.06e-09;1!UBERON:0009854;1.06e-09;1!UBERON:0001961;1.06e-09;1!UBERON:0001744;1.06e-09;1!UBERON:0001042;1.06e-09;1!UBERON:0001735;1.06e-09;1!UBERON:0000029;1.99e-09;1!UBERON:0001155;8.52e-09;9!UBERON:0004177;1.17e-07;5!UBERON:0005057;1.17e-07;5!UBERON:0002405;1.41e-07;27!UBERON:0000160;1.76e-07;17!UBERON:0000059;2.78e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.01e-12,3;UBERON:0004854,3.01e-12,3;UBERON:0009034,3.01e-12,3;UBERON:0002095,3.01e-12,3;UBERON:0004782,3.01e-12,3;UBERON:0003281,3.01e-12,3;UBERON:0009664,3.01e-12,3;UBERON:0002296,3.01e-12,3;UBERON:0005602,3.01e-12,3;UBERON:0001179,3.01e-12,3;UBERON:0006293,3.01e-12,3;UBERON:0005409,4.97e-11,25;UBERON:0001154,9.70e-10,1;UBERON:0001153,9.70e-10,1;UBERON:0001045,9.70e-10,1;UBERON:0002372,1.15e-09,1;UBERON:0001961,1.15e-09,1;UBERON:0001744,1.15e-09,1;UBERON:0001735,1.15e-09,1;UBERON:0000029,1.91e-09,1;UBERON:0001155,7.45e-09,9;UBERON:0000160,1.68e-07,17;UBERON:0000059,2.49e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,11.6912510794365,9.27736660784387,12.2001711036203,0,0,0,0,0,0,24.0148321798935,55.303831437607,0,0,0,0,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0.800791974072025,1.14950487990897,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.28853842595289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,4.97311047956066,0,0,17.9703815973161,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538651809526579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,1.94606641907346,0,0,0,0,0,0,0,4.19646015196032,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.678923115418936,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86281330544726,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.427149650270779,0,0.828478110694391,1.48849806543585,24.3062307234471,10.5959560591379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.98846882032731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,2.88084968889448,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,1.08043821351123,0,0,0,0,0,0,0,0,1.87967835959707,0,26.8841709438059,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.852935927603924,0,0.129177819672012,0.0620747142958579,0,0,0,0.217716747896961,0,4.04112318087525,1.2192774916755,0,0,0,0,0,0,0,0,0,0.201273793591026,15.3872876305552 | |||
|short_description=p6@KCNN3 | |||
}} |
Revision as of 21:11, 10 January 2014
Short description: | p6@KCNN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_KCNN3_5end |
Coexpression cluster: | C1464_Burkitt_myeloma_lymphangiectasia_splenic_b_xeroderma_B |
Association with transcript: | -4bp_to_NM_170782, uc001ffo.2_5end |
EntrezGene: | KCNN3 |
HGNC: | 6292 |
UniProt: | Q9UGI6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 7.10e-57 | 24 |
pro-B cell | 7.10e-57 | 24 |
lymphoid lineage restricted progenitor cell | 4.08e-29 | 52 |
lymphocyte | 1.60e-28 | 53 |
common lymphoid progenitor | 1.60e-28 | 53 |
mature B cell | 1.46e-17 | 2 |
pre-B-II cell | 1.46e-17 | 2 |
transitional stage B cell | 1.46e-17 | 2 |
small pre-B-II cell | 1.46e-17 | 2 |
immature B cell | 1.46e-17 | 2 |
precursor B cell | 4.99e-12 | 3 |
nongranular leukocyte | 1.05e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 4.03e-11 | 120 |
B-1 B cell | 1.06e-09 | 1 |
antibody secreting cell | 1.36e-09 | 1 |
plasma cell | 1.36e-09 | 1 |
plasmablast | 1.36e-09 | 1 |
leukocyte | 1.56e-09 | 136 |
hematopoietic oligopotent progenitor cell | 1.11e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.11e-07 | 161 |
hematopoietic stem cell | 2.91e-07 | 168 |
hematopoietic cell | 9.02e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.01e-12 | 3 |
gastrointestinal system mesentery | 3.01e-12 | 3 |
stomach region | 3.01e-12 | 3 |
mesentery | 3.01e-12 | 3 |
gastrointestinal system serosa | 3.01e-12 | 3 |
mesentery of stomach | 3.01e-12 | 3 |
gut mesentery | 3.01e-12 | 3 |
dorsal mesentery | 3.01e-12 | 3 |
dorsal mesogastrium | 3.01e-12 | 3 |
peritoneal cavity | 3.01e-12 | 3 |
spleen primordium | 3.01e-12 | 3 |
gastrointestinal system | 4.97e-11 | 25 |
vermiform appendix | 9.70e-10 | 1 |
caecum | 9.70e-10 | 1 |
midgut | 9.70e-10 | 1 |
tonsil | 1.15e-09 | 1 |
mucosa-associated lymphoid tissue | 1.15e-09 | 1 |
lymphoid tissue | 1.15e-09 | 1 |
tonsillar ring | 1.15e-09 | 1 |
lymph node | 1.91e-09 | 1 |
colon | 7.45e-09 | 9 |
intestine | 1.68e-07 | 17 |
large intestine | 2.49e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.60e-30 | 10 |
genetic disease | 5.79e-10 | 1 |
monogenic disease | 5.79e-10 | 1 |
xeroderma pigmentosum | 5.79e-10 | 1 |
bone marrow cancer | 8.17e-10 | 1 |
myeloma | 8.17e-10 | 1 |
lymphatic system cancer | 1.06e-09 | 1 |
lymphosarcoma | 1.06e-09 | 1 |
hematologic cancer | 1.56e-09 | 51 |
immune system cancer | 1.56e-09 | 51 |
anemia | 1.76e-09 | 1 |