FFCP PHASE1:Hg19::chr1:32538492..32538508,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55116 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25510 | |||
|TSSclassifier=strong | |||
|UniProt=Q9GZU3,Q9BT39 | |||
|association_with_transcript=0bp_to_ENST00000336294,NM_018056,uc001bue.3,uc001buf.3,uc010ogt.1,uc010ogu.1,uc010ogv.1,uc010ogw.1_5end | |||
|coexpression_cluster_id=C2581 | |||
|description=CAGE_peak_2_at_TMEM39B_5end | |||
|id=chr1:32538492..32538508,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.55e-17!180;CL:0000115!7.17e-17!35;CL:0002139!5.56e-16!24;CL:0002078!2.35e-14!44;CL:0000222!5.29e-14!119;CL:0000071!3.40e-13!18;CL:0002546!3.40e-13!18;CL:0000213!3.95e-11!57;CL:0000215!3.95e-11!57;CL:0000220!7.98e-10!246;CL:0002321!8.96e-10!248;CL:0000057!2.15e-08!75;CL:1000413!2.47e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.84e-19;24!CL:0000115;2.06e-18;36!CL:0000071;1.14e-15;18!CL:0002078;5.90e-12;45!CL:0000213;1.86e-09;58!CL:0000215;1.86e-09;58!CL:1000413;1.43e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.68e-21,36;CL:0002139,1.39e-18,24;CL:0002078,1.76e-17,45;CL:0000071,2.71e-15,18;CL:0002546,2.71e-15,18;CL:0000222,4.40e-15,121;CL:0000213,5.38e-14,58;CL:0000215,5.38e-14,58;CL:0002321,1.60e-08,250;CL:1000413,2.22e-08,9;CL:0000057,2.99e-08,76 | |||
|ontology_enrichment_development_v019=CL:0002546;1.14e-15;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!3.40e-13!18;UBERON:0004638!3.40e-13!18;UBERON:0004852!3.40e-13!18;UBERON:0002049!3.51e-13!79;UBERON:0007798!3.51e-13!79;UBERON:0000055!9.37e-12!69;UBERON:0000487!2.41e-11!22;UBERON:0004535!6.41e-11!110;UBERON:0004872!1.31e-10!84;UBERON:0006914!3.09e-10!25;UBERON:0001009!3.57e-10!113;UBERON:0001981!2.01e-09!60;UBERON:0007500!2.01e-09!60;UBERON:0004537!2.01e-09!60;UBERON:0006965!2.01e-09!60;UBERON:0000490!2.64e-09!138;UBERON:0003914!8.51e-09!118;UBERON:0003915!2.47e-07!9;UBERON:0004700!2.47e-07!9;UBERON:0001917!2.47e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.14e-15;18!UBERON:0001986;1.14e-15;18!UBERON:0004852;1.14e-15;18!UBERON:0000487;1.39e-13;22!UBERON:0006914;1.60e-12;25!UBERON:0000490;7.34e-11;33!UBERON:0003915;1.43e-08;9!UBERON:0004700;1.43e-08;9!UBERON:0001917;1.43e-08;9!UBERON:0000055;7.96e-08;65!UBERON:0003914;3.45e-07;74!UBERON:0007500;8.90e-07;56!UBERON:0001981;8.90e-07;56!UBERON:0004537;8.90e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.71e-15,18;UBERON:0001986,2.71e-15,18;UBERON:0004852,2.71e-15,18;UBERON:0002049,4.57e-14,78;UBERON:0007798,4.57e-14,78;UBERON:0000487,1.80e-13,22;UBERON:0000055,7.38e-13,68;UBERON:0006914,3.38e-12,25;UBERON:0004535,1.67e-11,109;UBERON:0004872,1.71e-11,83;UBERON:0007500,9.90e-11,59;UBERON:0001981,9.90e-11,59;UBERON:0004537,9.90e-11,59;UBERON:0006965,9.90e-11,59;UBERON:0001009,1.57e-10,112;UBERON:0000490,2.86e-10,148;UBERON:0003914,7.77e-09,117;UBERON:0003915,2.22e-08,9;UBERON:0004700,2.22e-08,9;UBERON:0001917,2.22e-08,9;UBERON:0007503,3.30e-07,78 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.563817616383885,1.0007329835313,0.446961094427288,0,0,0,0.261185628199839,3.44027511102112,3.48900583986214,0.436882744260345,1.84636884759917,0.37129905888014,0,0.672325146451775,3.01347264011988,4.38186054232424,2.43966399395253,2.21617904538218,3.26401105990805,3.76145665773705,2.28988789704845,2.32686522623903,1.63205431473244,1.22261449196722,0.492603536699674,0.865818594450472,0,0,0,1.83884244895785,1.8072355126695,1.10926203050036,1.93668001450754,1.42169232487422,0.587200878669695,0,0.802177789880567,0.434021741431704,0,0.32389366601898,0,0.145398238779565,0,0.242584061187816,0,1.23350366406548,0.309706370895104,0,0,1.18241114944293,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0.449446968890169,0.612167784741805,0.320929027076094,0,0.329851300186716,0,0,0.580418477257168,0,1.24564449799115,0,0,0.217188844705117,0,0.736555271975129,1.26584954976354,0,0,0,0.561643155732475,0.300353785683013,0.32145117339416,0,0,0.365328307529268,1.75996244461323,1.63841583378639,0.889509253863555,0.853460445133014,0.400395987036012,1.14950487990897,0,0,0.569212969109448,1.76171156811282,1.52909291250092,0,1.12101712596307,0.790152254325231,0.393419540227666,0.393010762749165,1.02800749499755,1.5046784585161,0.977766799900771,2.36723902867367,0,0.445641827540694,1.17842362989935,0.886135578334485,0,1.40900451698243,1.69077151827842,1.47994114143309,1.10540007114339,1.15921234294021,0.444859689486181,0.267540828089713,1.04535523804977,0.793165398882963,0.766440987203842,1.71813722741315,1.01207876807801,0.318565414324097,0.651083453856419,0,0.752875595388864,0.639933055772092,0,0,0,0,0.267440195783507,0.724122019413995,2.43806866313962,2.01210257911091,1.2786256184353,1.0843174571537,1.00267582127178,1.30361867064741,1.5905718941022,0.973269740605272,0.756278537312543,0.665188192387692,1.66886092816939,1.0478326039817,1.82147644146271,0.741568885568859,0.324547393654683,0.174129737299267,0,0.953962497221368,0.571994910780128,1.11437250398869,17.49109184827,11.1830497363796,19.7870085916329,11.3061588384802,10.4874859052476,14.0310201389434,9.61376846069329,5.16833518338658,1.42306505074684,4.35136796594071,12.4877088303836,6.0821768457481,16.5962199132755,12.5005447317595,5.67099363517232,12.6805614163393,14.8189385933272,14.9773269042819,13.7984973719295,20.8838445104988,14.1065342826414,0,0,0,0.993943903390637,1.77282716330412,0.264818361626438,1.14734648299525,1.41867352879343,1.68203280042692,4.2699598291882,1.48000529050296,1.55605517699883,3.63718814588158,6.37501422142489,1.96764655938411,2.88087962239999,3.04617861383936,1.87296046098192,3.4228309292667,1.64393548606981,2.23125547423153,2.26622122115384,2.80901613404497,1.83738754129404,2.57952066354713,1.54988671763648,5.94001428641027,2.47266929278557,0.910161361938026,2.15585442544872,1.5150250255866,2.25213335769535,1.6623846929051,1.75591048352335,0.612975591598039,1.95309476578576,2.26864366320042,1.4351170855109,1.70845911054854,1.48352330811693,2.40072876867522,1.54578793857658,0.772921620136887,1.8611685633159,1.5189869901714,0.876933046450788,1.00973509697646,1.01254888506529,1.13152239773168,1.06502877754984,0.806016785821122,2.88253006927829,0.193260853163297,0,1.72082757233402,0.853815942907168,0.927708378250397,1.51052125730374,1.14027160516907,1.26160425437814,1.82488679537915,0,1.28648187638577,5.52539685409922,0,0.721879481669586,0.828147600278907,1.51726221070292,1.44606617930089,1.32352767278873,1.08939722046203,1.89816495288877,0.808987848960987,0.588664395376038,0.769494313892781,16.9775754563669,7.01208869017229,0.8231480226628,8.82052268313252,1.26755034821831,0,0.590789906681404,3.97316789473185,0.614942192715568,2.40194934417936,0.658501712451753,1.1240175325762,0.502644862058154,0.740707561268237,0.651616610620649,5.19967392639789,1.44331342025273,1.39116485970092,0.70445216541493,6.92958949253154,5.09284063834272,7.99067439385313,1.58040879591855,2.57545848628462,0,0,0.148631162288728,2.81201501960331,0.335964256397719,0.992425680696705,0.268675568108545,0.581267877027924,1.15014803749563,0.985326475791887,0.176096868026452,0.829312462163088,0.432359860250884,0.37872730027914,0.444485260045183,0.381988425558278,0,1.71072446022705,0.616964956219941,0.600686115687835,0.571652865261156,4.03671903643299,2.1798003441664,3.6669142910475,1.16344544182,3.57656445851882,0.845302752556,1.59562869950922,1.04007436911366,2.57207374262142,8.5109479213967,5.86128793835419,0.57191197463259,0.542621605391443,0.823240336780769,0.977208552881205,0,3.16780749173372,0.602878754119172,0.871533458600294,0.899756920638513,0,0,0,0.718874566474748,0,4.27910715122155,1.44781306667579,2.05476322550383,0.537182889719687,2.24170287987055,0,0.431255149719035,0.513372145118994,1.01637849688985,1.30139853857622,3.86644406388848,2.84777651068393,3.18969375826582,0,0,0,0.736148950314839,0,1.08506009479894,0,1.60586089917446,0.315404830067869,1.05427273493442,0.902838299183157,2.274075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| |||
|short_description=p2@TMEM39B | |||
}} |
Revision as of 17:35, 10 January 2014
Short description: | p2@TMEM39B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TMEM39B_5end |
Coexpression cluster: | C2581_Renal_Endothelial_extraskeletal_Hepatic_Lymphatic_Mesenchymal_Smooth |
Association with transcript: | 0bp_to_ENST00000336294, NM_018056, uc001bue.3, uc001buf.3, uc010ogt.1, uc010ogu.1, uc010ogv.1, uc010ogw.1_5end |
EntrezGene: | TMEM39B |
HGNC: | 25510 |
UniProt: | Q9GZU3Q9BT39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.68e-21 | 36 |
endothelial cell of vascular tree | 1.39e-18 | 24 |
meso-epithelial cell | 1.76e-17 | 45 |
blood vessel endothelial cell | 2.71e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.71e-15 | 18 |
mesodermal cell | 4.40e-15 | 121 |
lining cell | 5.38e-14 | 58 |
barrier cell | 5.38e-14 | 58 |
embryonic cell | 1.60e-08 | 250 |
endothelial cell of artery | 2.22e-08 | 9 |
fibroblast | 2.99e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.71e-15 | 18 |
endothelium | 2.71e-15 | 18 |
cardiovascular system endothelium | 2.71e-15 | 18 |
vasculature | 4.57e-14 | 78 |
vascular system | 4.57e-14 | 78 |
simple squamous epithelium | 1.80e-13 | 22 |
vessel | 7.38e-13 | 68 |
squamous epithelium | 3.38e-12 | 25 |
cardiovascular system | 1.67e-11 | 109 |
splanchnic layer of lateral plate mesoderm | 1.71e-11 | 83 |
epithelial tube open at both ends | 9.90e-11 | 59 |
blood vessel | 9.90e-11 | 59 |
blood vasculature | 9.90e-11 | 59 |
vascular cord | 9.90e-11 | 59 |
circulatory system | 1.57e-10 | 112 |
unilaminar epithelium | 2.86e-10 | 148 |
epithelial tube | 7.77e-09 | 117 |
endothelial tube | 2.22e-08 | 9 |
arterial system endothelium | 2.22e-08 | 9 |
endothelium of artery | 2.22e-08 | 9 |
epithelial vesicle | 3.30e-07 | 78 |