FFCP PHASE1:Hg19::chr20:44640717..44640734,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4318 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7176 | |||
|TSSclassifier=weak | |||
|UniProt=F5H3W7 | |||
|association_with_transcript=163bp_to_ENST00000545925_5end | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_5_at_MMP9_5end | |||
|id=chr20:44640717..44640734,+ | |||
|ontology_enrichment_celltype=CL:0000990!2.30e-17!8;CL:0000453!6.47e-15!5;CL:0000451!4.42e-14!10;CL:0000840!5.13e-12!5;CL:0001029!5.13e-12!5;CL:0001014!3.21e-10!2;CL:0001016!3.21e-10!2;CL:0000039!5.36e-10!7;CL:0000586!5.36e-10!7;CL:0002322!1.99e-08!5;CL:0000235!3.90e-07!10;CL:0002009!8.59e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000453;6.35e-50;5!CL:0001014;3.35e-32;2!CL:0001016;3.35e-32;2!CL:0000990;5.74e-28;8!CL:0000451;5.80e-23;10!CL:0000039;4.62e-20;7!CL:0000586;4.62e-20;7!CL:0002322;4.38e-13;5!CL:0000840;2.02e-11;5!CL:0000235;3.66e-11;6!CL:0000317;6.67e-09;2!CL:1000448;6.67e-09;2!CL:0002308;6.67e-09;2!CL:0002140;6.67e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,6.37e-50,5;CL:0001014,3.35e-32,2;CL:0001016,3.35e-32,2;CL:0000990,5.75e-28,8;CL:0000451,5.80e-23,10;CL:0000039,5.44e-20,7;CL:0000586,5.44e-20,7;CL:0002322,4.39e-13,5;CL:0000840,2.02e-11,5;CL:0001029,2.02e-11,5;CL:0000235,3.57e-11,6;CL:0000317,7.49e-09,2;CL:1000448,7.49e-09,2;CL:0002308,7.49e-09,2;CL:0002140,7.49e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.99e-14;10!UBERON:0005564;2.99e-14;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;8.69e-07;22!DOID:2994;8.69e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,9.14e-07,22;DOID:2994,9.14e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.27e-18!8;UBERON:0003135!4.46e-13!11;UBERON:0000991!1.05e-08!21;UBERON:0009196!1.05e-08!21;UBERON:0009117!1.05e-08!21;UBERON:0005564!1.05e-08!21;UBERON:0004176!2.89e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.21e-17;8!UBERON:0003135;5.16e-13;11!UBERON:0002419;6.67e-09;2!UBERON:0007771;6.67e-09;2!UBERON:0003297;6.67e-09;2!UBERON:0001821;6.67e-09;2!UBERON:0003487;6.67e-09;2!UBERON:0001820;6.67e-09;2!UBERON:0000991;4.37e-07;21!UBERON:0003101;8.69e-07;22!UBERON:0000079;8.69e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.40e-17,8;UBERON:0003135,5.72e-13,11;UBERON:0002419,7.49e-09,2;UBERON:0007771,7.49e-09,2;UBERON:0003297,7.49e-09,2;UBERON:0001821,7.49e-09,2;UBERON:0003487,7.49e-09,2;UBERON:0001820,7.49e-09,2;UBERON:0005089,7.49e-09,2;UBERON:0005088,7.49e-09,2;UBERON:0000991,4.60e-07,21;UBERON:0009196,4.60e-07,21;UBERON:0009117,4.60e-07,21;UBERON:0005564,4.60e-07,21;UBERON:0004176,9.14e-07,22;UBERON:0003101,9.14e-07,22;UBERON:0000079,9.14e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522389211897802,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.818238361772504,0,1.09776335516636,0,1.39432731443422,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,2.10603838625314,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0.290033387828457,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0.886860307073351,0,0,0.764637207142375,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0.275078873194468,0.415440338029185,49.0443083582271,10.0594254092533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.89720617678777,3.18875616752071,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42922671769058,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,1.06886962106224,1.19463369395298,1.25353769646188,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@MMP9 | |||
}} |
Revision as of 11:40, 21 January 2014
Short description: | p5@MMP9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MMP9_5end |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | 163bp_to_ENST00000545925_5end |
EntrezGene: | MMP9 |
HGNC: | 7176 |
UniProt: | F5H3W7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 6.37e-50 | 5 |
CD1a-positive Langerhans cell | 3.35e-32 | 2 |
immature CD1a-positive Langerhans cell | 3.35e-32 | 2 |
conventional dendritic cell | 5.75e-28 | 8 |
dendritic cell | 5.80e-23 | 10 |
germ line cell | 5.44e-20 | 7 |
germ cell | 5.44e-20 | 7 |
embryonic stem cell | 4.39e-13 | 5 |
immature conventional dendritic cell | 2.02e-11 | 5 |
common dendritic progenitor | 2.02e-11 | 5 |
macrophage | 3.57e-11 | 6 |
sebum secreting cell | 7.49e-09 | 2 |
epithelial cell of sweat gland | 7.49e-09 | 2 |
epithelial cell of skin gland | 7.49e-09 | 2 |
acinar cell of sebaceous gland | 7.49e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 1.40e-17 | 8 |
male reproductive organ | 5.72e-13 | 11 |
skin gland | 7.49e-09 | 2 |
epidermis gland | 7.49e-09 | 2 |
gland of integumental system | 7.49e-09 | 2 |
sebaceous gland | 7.49e-09 | 2 |
skin sebaceous gland | 7.49e-09 | 2 |
sweat gland | 7.49e-09 | 2 |
sweat gland placode | 7.49e-09 | 2 |
sebaceous gland placode | 7.49e-09 | 2 |
gonad | 4.60e-07 | 21 |
indifferent external genitalia | 4.60e-07 | 21 |
indifferent gonad | 4.60e-07 | 21 |
gonad primordium | 4.60e-07 | 21 |
external genitalia | 9.14e-07 | 22 |
male organism | 9.14e-07 | 22 |
male reproductive system | 9.14e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.14e-07 | 22 |
germ cell cancer | 9.14e-07 | 22 |