FFCP PHASE1:Hg19::chr22:28197702..28197758,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4330 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7180 | |||
|TSSclassifier=strong | |||
|UniProt=Q10571 | |||
|association_with_transcript=-216bp_to_ENST00000302326,NM_002430,uc003adj.2_5end | |||
|coexpression_cluster_id=C4092 | |||
|description=CAGE_peak_1_at_MN1_5end | |||
|id=chr22:28197702..28197758,- | |||
|ontology_enrichment_celltype=CL:0000860!1.09e-13!45;CL:0002057!3.15e-13!42;CL:0000057!7.47e-09!75;CL:0000055!4.97e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.78e-15;33!CL:0002057;3.78e-15;33!CL:0000473;2.86e-08;39!CL:0000234;2.86e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.28e-13,42;CL:0002057,3.28e-13,42;CL:0000473,6.98e-09,48;CL:0000234,6.98e-09,48;CL:0000057,1.56e-08,76 | |||
|ontology_enrichment_development_v019=CL:0002057;4.52e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!9.89e-21!659;UBERON:0000467!7.99e-17!625;UBERON:0000480!1.74e-16!626;UBERON:0000922!1.64e-15!612;UBERON:0002050!3.80e-14!605;UBERON:0005423!3.80e-14!605;UBERON:0000062!6.19e-14!511;UBERON:0000923!6.21e-14!604;UBERON:0005291!6.21e-14!604;UBERON:0006598!6.21e-14!604;UBERON:0002532!6.21e-14!604;UBERON:0000033!1.13e-13!123;UBERON:0000924!3.48e-13!173;UBERON:0006601!3.48e-13!173;UBERON:0000153!7.13e-13!129;UBERON:0007811!7.13e-13!129;UBERON:0004121!8.50e-13!169;UBERON:0002346!2.47e-10!90;UBERON:0003075!5.33e-10!86;UBERON:0007284!5.33e-10!86;UBERON:0000475!5.99e-10!365;UBERON:0005743!2.36e-09!86;UBERON:0001017!9.43e-09!82;UBERON:0002616!4.83e-08!59;UBERON:0000073!6.58e-08!94;UBERON:0001016!6.58e-08!94;UBERON:0000477!1.15e-07!286;UBERON:0001444!3.19e-07!48;UBERON:0003056!3.32e-07!61;UBERON:0000955!4.58e-07!69;UBERON:0006238!4.58e-07!69;UBERON:0001049!7.86e-07!57;UBERON:0005068!7.86e-07!57;UBERON:0006241!7.86e-07!57;UBERON:0007135!7.86e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002050,6.46e-14,564;UBERON:0000923,2.30e-13,560;UBERON:0010316,2.30e-13,560;UBERON:0005291,2.30e-13,560;UBERON:0006598,2.30e-13,560;UBERON:0010317,2.30e-13,560;UBERON:0002532,2.30e-13,560;UBERON:0000922,4.83e-13,592;UBERON:0004121,4.91e-13,171;UBERON:0000924,4.91e-13,171;UBERON:0006601,4.91e-13,171;UBERON:0010314,2.11e-11,132;UBERON:0005423,2.81e-11,581;UBERON:0002346,1.74e-10,86;UBERON:0003075,3.78e-10,82;UBERON:0007284,3.78e-10,82;UBERON:0010371,2.88e-09,104;UBERON:0001017,1.95e-08,81;UBERON:0003056,2.78e-07,61;UBERON:0000073,3.33e-07,53;UBERON:0002616,3.33e-07,53;UBERON:0001049,3.89e-07,56;UBERON:0005068,3.89e-07,56;UBERON:0006241,3.89e-07,56;UBERON:0007135,3.89e-07,56;UBERON:0001016,4.31e-07,89;UBERON:0001444,5.54e-07,49;UBERON:0000033,5.56e-07,56;UBERON:0000955,7.17e-07,68;UBERON:0006238,7.17e-07,68 | |||
|phase1_expression=23.9815460637135,28.6894702013917,28.7546984355781,39.0285863577209,28.6055100433464,37.5105565363159,15.1979926900986,1.26343974685366,8.61912573059467,8.10921990454979,5.58240934377942,31.8924403310052,49.8519588851777,5.19818682432196,5.63375538737457,4.70627602516243,3.01347264011988,4.38186054232424,2.43966399395253,107.607804759113,79.7642702765029,89.9615050642112,32.9171385200715,29.9754990909616,34.6497685281656,0,0,0,10.2274711980715,7.67658796194425,21.6742572642506,9.19421224478927,18.9759728830298,8.8740962440029,0,0,7.63361142270603,22.713811749807,25.6696892761781,12.8036413722353,0,0,0,55.9783219301324,43.8336094679019,43.9077150749947,92.9716147622738,56.741168547012,68.1354015969228,56.6754012874636,46.1089271752381,26.7224919774101,35.8535507966083,36.7926269642781,39.2736811123591,103.721529087975,60.8580714628996,40.2255037156702,76.8270569850965,69.6415988755123,74.1631065926888,51.126951528941,43.4830773615157,42.6224750532694,105.055744383547,102.696725669096,108.993893574226,63.8171609752128,44.3260480657171,25.6282836752038,76.8857368344378,66.6582521137492,42.7224223045194,3.16882929467913,2.97646019951061,0.209658645508376,5.72876018847125,2.55300717830561,2.08943262706204,1.99508920618874,5.17183360717634,0.547992461293902,0,0,0,0,0,0,0,0,0,0,0,21.1474125726441,11.7706798226123,3.423993102076,0.196709770113833,0,0.822405995998037,0,0,0.473447805734733,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0.434473211648397,24.3806866313962,6.70700859703636,15.3435074212236,19.5177142287666,22.0588680679791,23.8996756285359,23.0632924644819,19.9520296824081,13.8020833059539,38.5809151584861,29.248983635811,6.81091192588106,45.9012063248603,38.9323664923651,0.324547393654683,0,0,2.14641561874808,0.571994910780128,0.371457501329565,6.75792185046797,5.16140757063675,5.9013885273291,4.52246353539208,7.1314904155684,1.10047216776027,5.22487416342026,1.29208379584664,2.49036383880697,11.7152214467635,6.8480983908555,1.52054421143703,9.51842024437861,3.30896772311282,5.67099363517232,1.25019619597712,2.46982309888787,0.900891843866578,3.06633274931766,1.89853131913626,1.83201743930407,2.63560834872127,0,37.5040884842579,25.8425414881566,14.0559867947684,10.4603252842443,40.1571269048339,21.9894396962981,37.5653992095346,23.4847790605351,75.7269373640681,12.7596524513904,3.50247747381189,7.35578564010564,67.9594850125742,123.8778237632,19.9173217058727,0.312160076830321,0.570471821544449,1.04614076386261,0.352303495931295,1.29498355494505,0.702254033511242,17.9655670704306,21.2503368949359,40.4003804397243,36.8280885757437,33.8755693111623,4.55080680969013,0.718618141816238,11.9518640907387,31.6549855276069,7.48073111807294,40.3859411210371,13.7919508109559,32.0007065471051,6.80593098960126,21.5267562826634,17.9388206607597,22.0409177205944,28.5086541280182,19.6830330845418,30.4015837253842,16.5644002135115,43.3755173860054,49.7903096373725,56.7975992049258,28.8116182750397,78.0750454434861,19.8805371809304,8.06016785821122,9.15627198476633,18.3597810505132,9.81886034127005,11.4721838155602,6.95250124938694,8.74696470921803,10.6898427439957,16.8967519675054,8.32658807889574,9.48941133597158,1.56449532329816,19.9404690839794,0,0,0,4.14073800139454,6.06904884281166,5.06123162755312,3.74999507290139,4.35758888184812,4.50814176311084,3.91010793664477,5.29797955838434,6.15595451114225,19.1920418202409,12.6217596423101,74.083322039652,76.4445299204818,0,0.982827216677626,1.18157981336281,0,1.22988438543114,4.11762744716461,25.791317071027,5.62008766288098,7.94178882051884,26.7580606508151,9.77424915930974,2.07986957055916,8.6598805215164,10.8974580676572,36.9837386842838,0.288732895522148,1.38895653772983,0.570762456703795,0,0,0,0.234004265139238,0.445893486866185,7.49870671894216,13.2705881277099,8.08118054281603,11.7321664740731,7.55648240136301,8.05103626246943,0,0,0,0.288239906833923,0,0.063497894292169,0,0,17.1072446022705,0.205654985406647,0,0,9.30688000066494,19.1822430286643,2.71351657537515,10.8588241236533,3.57656445851882,0,0.26593811658487,0,0,0,0,6.0050757336422,5.96883765930587,0.823240336780769,0,5.68627117988073,0,20.7993170171114,13.9445353376047,32.0913301694403,0,0,0,34.0267294798047,111.41607775909,0,12.0168484534091,0,3.40215830155802,0,1.77327684181734,0.862510299438069,1.28343036279748,19.8193806893521,97.6048903932163,91.248079907768,99.8396941392719,54.862732642172,0,0,0,6.99341502799097,2.00068208423871,0.813795071099207,20.1731735684883,34.0799368602579,34.2214240623638,20.1483233787467,4.8151375956435,6.82222512167955,15.5209606938757,10.627609576567,17.6994401800035,3.30157734978715,85.7609069686804,73.0895492717123,6.40980880980951,4.09856981555372,2.98837161849644,7.27506171471023,91.5394917307734,54.7326430926721,32.7502306320785,66.295572460443,61.7452207752762,39.3387188215002,49.6356031594702,36.0312783361681,26.7152519600984,0.925258162815933,8.34540108971697,1.72467027628999,5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| |||
|short_description=p1@MN1 | |||
}} |
Revision as of 15:06, 21 January 2014
Short description: | p1@MN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MN1_5end |
Coexpression cluster: | C4092_occipital_duodenum_temporal_parietal_Fibroblast_Neural_Multipotent |
Association with transcript: | -216bp_to_ENST00000302326, NM_002430, uc003adj.2_5end |
EntrezGene: | MN1 |
HGNC: | 7180 |
UniProt: | Q10571 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.28e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.28e-13 | 42 |
defensive cell | 6.98e-09 | 48 |
phagocyte | 6.98e-09 | 48 |
fibroblast | 1.56e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
embryonic structure | 6.46e-14 | 564 |
germ layer | 2.30e-13 | 560 |
germ layer / neural crest | 2.30e-13 | 560 |
embryonic tissue | 2.30e-13 | 560 |
presumptive structure | 2.30e-13 | 560 |
germ layer / neural crest derived structure | 2.30e-13 | 560 |
epiblast (generic) | 2.30e-13 | 560 |
embryo | 4.83e-13 | 592 |
ectoderm-derived structure | 4.91e-13 | 171 |
ectoderm | 4.91e-13 | 171 |
presumptive ectoderm | 4.91e-13 | 171 |
structure with developmental contribution from neural crest | 2.11e-11 | 132 |
developing anatomical structure | 2.81e-11 | 581 |
neurectoderm | 1.74e-10 | 86 |
neural plate | 3.78e-10 | 82 |
presumptive neural plate | 3.78e-10 | 82 |
ecto-epithelium | 2.88e-09 | 104 |
central nervous system | 1.95e-08 | 81 |
pre-chordal neural plate | 2.78e-07 | 61 |
regional part of nervous system | 3.33e-07 | 53 |
regional part of brain | 3.33e-07 | 53 |
neural tube | 3.89e-07 | 56 |
neural rod | 3.89e-07 | 56 |
future spinal cord | 3.89e-07 | 56 |
neural keel | 3.89e-07 | 56 |
nervous system | 4.31e-07 | 89 |
subdivision of head | 5.54e-07 | 49 |
head | 5.56e-07 | 56 |
brain | 7.17e-07 | 68 |
future brain | 7.17e-07 | 68 |