FFCP PHASE1:Hg19::chr2:177053386..177053402,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3231 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5132 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-1bp_to_ENST00000375170_5end | |||
|description=CAGE_peak_1_at_HOXD1_5end | |||
|id=chr2:177053386..177053402,+ | |||
|ontology_enrichment_celltype=CL:0002078!8.00e-13!44;CL:0002139!4.79e-12!24;CL:0000115!6.24e-12!35;CL:1000497!1.61e-11!18;CL:0002518!1.61e-11!18;CL:1000449!3.48e-11!16;CL:0002681!6.33e-09!13;CL:0002584!6.33e-09!13;CL:1000507!1.54e-08!12;CL:1000494!1.54e-08!12;CL:0000066!1.33e-07!254;CL:0000071!1.43e-07!18;CL:0002546!1.43e-07!18;CL:0000213!6.97e-07!57;CL:0000215!6.97e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;9.01e-18;24!CL:1000449;2.22e-16;15!CL:0000115;1.06e-15;36!CL:1000497;6.97e-14;17!CL:0002518;6.97e-14;17!CL:0002681;6.69e-13;12!CL:0002584;6.69e-13;12!CL:1000507;8.69e-13;10!CL:1000494;8.69e-13;10!CL:0002078;1.48e-12;45!CL:0000071;6.86e-11;18!CL:0002138;3.43e-09;6!CL:0002543;7.61e-08;6!CL:1000746;2.99e-07;7!CL:1000612;2.99e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002078,2.75e-19,45;CL:0000115,6.38e-19,36;CL:0002139,9.12e-18,24;CL:1000449,1.88e-16,15;CL:1000497,6.03e-14,17;CL:0002518,6.03e-14,17;CL:0002681,5.72e-13,12;CL:0002584,5.72e-13,12;CL:1000507,7.51e-13,10;CL:1000494,7.51e-13,10;CL:0000071,6.70e-11,18;CL:0002546,6.70e-11,18;CL:0000213,1.93e-10,58;CL:0000215,1.93e-10,58;CL:0005020,3.63e-09,6;CL:0002138,3.63e-09,6;CL:0005022,3.63e-09,6;CL:0000066,2.56e-08,253;CL:0002543,7.03e-08,6;CL:1000746,2.45e-07,7;CL:1000612,2.45e-07,7 | |||
|ontology_enrichment_development_v019=CL:0002546;6.86e-11;18!CL:0005022;3.43e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.28e-22!115;UBERON:0000489!2.29e-16!32;UBERON:0001008!3.15e-14!45;UBERON:0004876!7.76e-14!20;UBERON:0006554!9.96e-14!44;UBERON:0001049!1.52e-13!57;UBERON:0005068!1.52e-13!57;UBERON:0006241!1.52e-13!57;UBERON:0007135!1.52e-13!57;UBERON:0004111!1.52e-13!241;UBERON:0002113!2.50e-13!27;UBERON:0003918!2.50e-13!27;UBERON:0005095!2.50e-13!27;UBERON:0007687!2.50e-13!27;UBERON:0000080!8.29e-13!18;UBERON:0002120!8.29e-13!18;UBERON:0004875!8.29e-13!18;UBERON:0005721!8.29e-13!18;UBERON:0005754!8.29e-13!18;UBERON:0007297!8.29e-13!18;UBERON:0003887!1.80e-12!21;UBERON:0003064!5.63e-12!37;UBERON:0006555!5.83e-12!17;UBERON:0005103!5.83e-12!17;UBERON:0000083!5.83e-12!17;UBERON:0009201!5.83e-12!17;UBERON:0004819!5.83e-12!17;UBERON:0006553!5.83e-12!17;UBERON:0003074!5.83e-12!17;UBERON:0003060!5.83e-12!17;UBERON:0000025!8.44e-12!194;UBERON:0004211!3.48e-11!16;UBERON:0001285!3.48e-11!16;UBERON:0007684!3.48e-11!16;UBERON:0003220!3.48e-11!16;UBERON:0004208!3.48e-11!16;UBERON:0000058!6.20e-11!26;UBERON:0005172!2.76e-10!55;UBERON:0005173!2.76e-10!55;UBERON:0000477!4.11e-10!286;UBERON:0001893!5.00e-10!34;UBERON:0002020!5.59e-10!34;UBERON:0003528!5.59e-10!34;UBERON:0000483!6.94e-10!309;UBERON:0003080!7.02e-10!42;UBERON:0002616!1.09e-09!59;UBERON:0002780!1.29e-09!41;UBERON:0001890!1.29e-09!41;UBERON:0006240!1.29e-09!41;UBERON:0002791!1.74e-09!33;UBERON:0001017!1.82e-09!82;UBERON:0000119!1.99e-09!312;UBERON:0000073!2.50e-09!94;UBERON:0001016!2.50e-09!94;UBERON:0003886!3.88e-09!63;UBERON:0001225!6.33e-09!13;UBERON:0008987!6.33e-09!13;UBERON:0005743!7.66e-09!86;UBERON:0001869!1.02e-08!32;UBERON:0001851!1.12e-08!16;UBERON:0000955!1.17e-08!69;UBERON:0006238!1.17e-08!69;UBERON:0009773!1.54e-08!12;UBERON:0001231!1.54e-08!12;UBERON:0004810!1.54e-08!12;UBERON:0002417!1.57e-08!61;UBERON:0000916!1.57e-08!61;UBERON:0005177!2.11e-08!107;UBERON:0000353!2.78e-08!17;UBERON:0002553!3.62e-08!70;UBERON:0002619!1.40e-07!22;UBERON:0001986!1.43e-07!18;UBERON:0004638!1.43e-07!18;UBERON:0004852!1.43e-07!18;UBERON:0000467!1.71e-07!625;UBERON:0003075!1.94e-07!86;UBERON:0007284!1.94e-07!86;UBERON:0006914!1.96e-07!25;UBERON:0000480!2.23e-07!626;UBERON:0000487!2.58e-07!22;UBERON:0009569!4.06e-07!113;UBERON:0000464!5.31e-07!104;UBERON:0002298!5.59e-07!8;UBERON:0003135!7.19e-07!11;UBERON:0002346!8.37e-07!90;UBERON:0000064!8.76e-07!219;UBERON:0001950!9.60e-07!20;UBERON:0000468!9.69e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.51e-19;30!UBERON:0001008;3.51e-19;30!UBERON:0000489;6.60e-19;29!UBERON:0006555;2.22e-16;15!UBERON:0004819;2.22e-16;15!UBERON:0001285;2.22e-16;15!UBERON:0007684;2.22e-16;15!UBERON:0002113;1.86e-14;24!UBERON:0011143;1.86e-14;24!UBERON:0000353;1.73e-13;15!UBERON:0001225;6.69e-13;12!UBERON:0008987;6.69e-13;12!UBERON:0004211;8.69e-13;10!UBERON:0009773;8.69e-13;10!UBERON:0001231;8.69e-13;10!UBERON:0004810;8.69e-13;10!UBERON:0001851;9.76e-12;15!UBERON:0001893;1.77e-11;34!UBERON:0000487;4.45e-11;22!UBERON:0003528;5.84e-11;34!UBERON:0002020;5.84e-11;34!UBERON:0004638;6.86e-11;18!UBERON:0001986;6.86e-11;18!UBERON:0004852;6.86e-11;18!UBERON:0002619;8.45e-11;22!UBERON:0002780;9.05e-11;41!UBERON:0001890;9.05e-11;41!UBERON:0006914;1.42e-10;25!UBERON:0001869;2.17e-10;32!UBERON:0002791;2.77e-10;32!UBERON:0000073;1.00e-09;53!UBERON:0002616;1.00e-09;53!UBERON:0001950;1.63e-09;20!UBERON:0000956;5.34e-09;25!UBERON:0000203;5.34e-09;25!UBERON:0002298;2.13e-08;6!UBERON:0000074;2.99e-07;7!UBERON:0001229;2.99e-07;7!UBERON:0005172;3.96e-07;52!UBERON:0005173;3.96e-07;52!UBERON:0007023;4.06e-07;114 | |||
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| |||
|short_description=p1@HOXD1 | |||
}} |
Revision as of 06:47, 21 January 2014
Short description: | p1@HOXD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -1bp_to_ENST00000375170_5end |
EntrezGene: | HOXD1 |
HGNC: | 5132 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meso-epithelial cell | 2.75e-19 | 45 |
endothelial cell | 6.38e-19 | 36 |
endothelial cell of vascular tree | 9.12e-18 | 24 |
epithelial cell of nephron | 1.88e-16 | 15 |
kidney cell | 6.03e-14 | 17 |
kidney epithelial cell | 6.03e-14 | 17 |
kidney cortical cell | 5.72e-13 | 12 |
renal cortical epithelial cell | 5.72e-13 | 12 |
kidney tubule cell | 7.51e-13 | 10 |
nephron tubule epithelial cell | 7.51e-13 | 10 |
blood vessel endothelial cell | 6.70e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.70e-11 | 18 |
lining cell | 1.93e-10 | 58 |
barrier cell | 1.93e-10 | 58 |
lymphangioblast | 3.63e-09 | 6 |
endothelial cell of lymphatic vessel | 3.63e-09 | 6 |
vascular lymphangioblast | 3.63e-09 | 6 |
epithelial cell | 2.56e-08 | 253 |
vein endothelial cell | 7.03e-08 | 6 |
glomerular cell | 2.45e-07 | 7 |
kidney corpuscule cell | 2.45e-07 | 7 |