FFCP PHASE1:Hg19::chr2:187454714..187454748,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3685 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6150 | |||
|TSSclassifier=strong | |||
|UniProt=B4DYQ7,B7ZLX0,P06756 | |||
|association_with_transcript=-41bp_to_ENST00000544640,NM_001145000,NM_002210,uc002upq.2,uc010frs.2_5end | |||
|description=CAGE_peak_2_at_ITGAV_5end | |||
|id=chr2:187454714..187454748,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.75e-07!180 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.73e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!6.87e-21!659;UBERON:0000467!1.04e-18!625;UBERON:0000480!1.82e-18!626;UBERON:0000062!6.66e-14!511;UBERON:0002050!1.53e-13!605;UBERON:0005423!1.53e-13!605;UBERON:0000923!3.19e-13!604;UBERON:0005291!3.19e-13!604;UBERON:0006598!3.19e-13!604;UBERON:0002532!3.19e-13!604;UBERON:0000922!5.38e-13!612;UBERON:0000475!4.12e-11!365;UBERON:0000477!6.81e-09!286;UBERON:0004111!7.24e-09!241;UBERON:0000483!9.53e-09!309;UBERON:0000119!1.77e-08!312;UBERON:0004872!4.82e-08!84;UBERON:0000033!6.10e-08!123;UBERON:0004121!1.43e-07!169;UBERON:0000025!3.28e-07!194;UBERON:0000924!4.04e-07!173;UBERON:0006601!4.04e-07!173;UBERON:0000153!5.41e-07!129;UBERON:0007811!5.41e-07!129;UBERON:0007023!5.47e-07!115;UBERON:0003075!8.79e-07!86;UBERON:0007284!8.79e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005423,2.64e-13,581;UBERON:0000922,3.30e-13,592;UBERON:0002050,1.97e-12,564;UBERON:0000923,1.89e-11,560;UBERON:0010316,1.89e-11,560;UBERON:0005291,1.89e-11,560;UBERON:0006598,1.89e-11,560;UBERON:0010317,1.89e-11,560;UBERON:0002532,1.89e-11,560;UBERON:0010314,3.08e-10,132;UBERON:0004111,6.08e-09,240;UBERON:0000483,4.06e-08,306;UBERON:0000119,7.35e-08,309;UBERON:0004872,1.21e-07,83;UBERON:0004923,2.45e-07,66;UBERON:0000025,4.33e-07,192;UBERON:0007023,5.13e-07,114 | |||
|phase1_expression=51.0516245750264,29.3317717730647,46.6559077557664,22.0161256376887,28.1585489489191,34.8935409640147,12.6649939084155,10.1075179748293,10.4474251279935,7.12628415854376,4.88460817580699,27.7420542605319,13.979649846108,9.2824764720035,13.5872924048445,20.1697543935533,21.6970030088632,16.0668219885222,18.5414463540393,5.90981078768582,7.54802557603736,6.58254915103984,11.7356754723733,14.0980657825071,15.94391522854,3.20936304141395,2.54511827294832,2.67616656466509,3.14691421479123,3.45446458287491,6.19264493264304,2.75826367343678,6.92773613189975,7.39508020333575,0.0774672005803016,0.710846162437108,2.64240395401362,12.1878989877013,17.046278034962,10.4165217943609,10.5240272892764,8.09734165047449,7.98484259665978,9.74168199823083,13.2256580291083,11.6440349370152,11.1565937714729,18.5025549609822,15.7950249156503,9.49384894663097,15.6258030982751,12.0605937243178,7.92915065694223,10.3277549373412,10.8341189275473,10.3533286748433,20.1950551042806,14.3823030044854,18.0589496498833,19.8975996787178,17.9014395223732,7.91643120448119,10.3721101963249,11.9342930149154,29.311133101487,36.3126543802329,34.8780459437522,10.0499466102697,13.037072960505,10.8594422352558,22.3997815974346,19.1504370713534,17.0889689218078,3.80259515361495,2.76385589954557,3.98351426465914,3.48218756554135,3.45406853535464,3.85741408072992,3.13514018115373,3.38158351238453,4.01861138282195,0,1.09227722252426,2.66852776159066,0.853460445133014,0,1.14950487990897,0.661044872784862,0.954053754535364,1.1384259382189,2.93618594685469,2.29363936875137,9.25199300053181,3.36305137788922,1.05353633910031,3.14735632182133,2.75107533924415,2.87842098599313,4.17966238476695,1.62961133316795,1.89379122293893,3.89653456815823,4.56782873229212,3.53527088969805,4.87374568083967,4.06205795647523,3.84273959177025,3.12142434143708,3.28875809207352,0.829050053357545,1.44901542867526,2.37258501059297,1.33770414044857,2.09071047609954,2.03956816855619,2.29932296161153,2.06176467289578,2.27717722817553,2.22995790026868,1.95325036156926,1.90090408889675,2.40920190524436,2.55973222308837,4.99722906209383,4.02521328474829,2.46338399076314,5.24177532384304,4.01160293675261,2.89648807765598,19.5045493051169,12.0726154746655,18.6679340291554,18.4333967716129,13.0347856765331,21.1475917682803,16.7010048880731,36.0109804023951,28.4549799663844,31.7073038371466,29.5124879928903,12.3775226345338,5.10013403609559,4.07862887062872,7.7891374477124,5.39802185627728,9.57297315735829,3.10037811596945,2.85997455390064,1.85728750664782,9.34183314623514,7.74211135595512,9.37279354340505,16.9592382577203,10.9069853414576,16.231964474464,9.8227634272301,19.1228401785303,19.2113781850824,23.4304428935269,14.5018554159293,6.0821768457481,13.1793511076012,13.971197053143,14.5825550618717,10.8945668506577,8.75664553242062,11.2611480483322,4.5994991239765,6.6448596169769,14.839341258363,1.31780417436063,0,8.28578699070815,32.800148811891,25.4527328445805,31.2485666719196,66.5460960137248,19.861429403108,12.8955848032731,26.6872489324262,16.5267257439497,18.3614510885862,29.6363478553314,19.1250426642747,13.6221684880438,21.31850920576,3.04617861383936,11.5499228427219,3.99330275081114,14.0481759718693,11.6260153657327,8.7411389958791,9.69110566245515,15.311562844117,6.75588745214724,16.1188218634194,17.8200428592308,22.7485574936272,0.910161361938026,2.15585442544872,8.58514181165738,12.3867334673245,13.8532057742091,15.8031943517102,15.017901994152,31.2495162525721,25.0685124783646,16.1450672119976,17.7252632719411,21.6170539182753,29.7090185123558,9.17167510222106,19.8383215835134,21.0312047654696,41.181425066869,14.8104247845022,13.8838575834263,17.9497302352484,10.9919318636792,24.4956618836464,10.4782182156746,9.83451435400828,17.7799984910233,30.8203116267643,20.6499308680083,4.14710600840624,3.84336328132307,4.53156377191122,6.63430752098371,5.04641701751257,3.6497735907583,9.38697193978896,14.1513006402435,6.90674606762403,9.75172648867156,2.16563844500876,5.67872640191251,6.40621822296786,4.57920956778616,3.74999507290139,8.27941887551143,4.98268300133303,3.64044532032444,3.72820783738158,3.8474715694639,4.42893272774789,11.2193419042757,4.5273141246454,10.2906097969879,5.07020139287323,6.87979051674338,5.90789906681404,0.882926198829301,6.27241036569879,19.0440269431363,17.6697959507887,10.1161577931858,8.74602059981188,21.2953423864618,1.95484983186195,2.07986957055916,18.7630744632855,24.113524234816,49.7812863559884,15.735942805957,13.8895653772983,22.0694816592134,2.37061319387782,3.43394464837949,14.7730203652438,13.3382431129365,15.309009715739,19.6841051372232,22.1736409222495,15.3117105021777,15.4040659048899,15.112964802726,6.9008882249738,17.243213326358,3.60998579454227,13.4763275101502,22.0503528727951,12.8767282094908,11.3026251840061,6.49380323449072,3.51652341630141,8.55362230113526,7.30075198193597,12.6144084294445,10.5755780073314,5.04589879554123,6.10344096366592,10.6340514440378,28.3105057509533,0,18.596660556232,20.7431730936199,17.6812642749322,4.62973273671856,2.83698264046557,5.59486575933809,27.165818795048,4.88359444852299,3.29296134712308,17.9154901361554,21.6789088732953,9.50342247520115,32.5554527224353,15.6876022548053,28.7922214604324,4.86495122564762,12.054170194371,6.32501818449095,26.5983589595657,20.6751484501405,4.27910715122155,16.0707250401013,13.1504846432245,19.6967059563885,0,2.95546140302891,4.52817907204986,3.9786341246722,16.5161505744601,13.0139853857622,4.63973287666617,6.8681668787083,5.74144876487847,0,0,0.414415513436035,11.7783832050374,7.00238729483548,8.95174578209127,22.8767947683888,15.5233220253531,17.6626704838007,31.042474973069,14.4454127869305,6.82222512167955,7.24311499047534,26.5690239414175,13.2745801350026,16.5947703634038,3.72022199179207,2.05886054286514,2.89475236572042,3.23571301227925,5.76328812138599,10.6094650006191,13.3148351608398,13.0027826131763,34.7350930946288,52.7909188110935,25.8207286878428,35.4945443438292,26.0970697024019,40.5351881281891,16.325987308949,10.3320494847779,17.5786108059996,14.0437436783614,10.3850885836724,11.272406710616,5.92211302998949,27.8703993721566,9.57642284933322,10.792558127473,8.19410256030227,16.7839251148063,7.21919380651859,36.1201931019705,7.0591479225917,5.84556898613043,41.1651352682215,5.68666920354483,5.4429985688485,15.3300300432519,4.62681758070868,8.12839312631558,3.51182841698397,7.64628819135115,8.31076008928724,7.16399215110971,0.219259876645935,0,13.5918566311686,10.8244833080903,24.0780012051584,12.4679624093744,7.50869611510416,7.01330749324998,16.653700601889,7.15066270640173,33.7436252672735,11.9871690682231,10.4753059637958,12.2802939780904,12.2674549511232,20.5172667698403,18.5621368210213,14.8294331704016,15.4025421668856,23.6357428966199,24.6003286227336,30.371825573711,27.6160741735651,3.253918845081,50.3699754929024,11.8496335927302,11.0892088863392,10.6461206063404,16.5287268494264,24.2774727026135,20.0374841438788,17.1192849905447,19.615524332561,22.1131024951637,0.511795582622668,7.27496279657665,19.0921948755562,14.1290755235861,18.3469906734981,10.9814811894422,13.4306138674083,6.46983941034611,6.34041284692033,16.0078213370813,6.82687234725426,11.9419609919329,8.45201174054043,12.0119922039027,15.5545975149084,7.910568163417,17.643690993476,14.5956574553068,9.64591947558278,2.31510213706675,15.7414740491192,12.3775329947249,8.98488144489275,5.07052084558035,18.5000644343226,28.2957238117789,16.7635394196188,3.90237170477658,19.8441177179804,27.3314761156719,3.03578539012572,3.49934720244983,14.4333169088268,8.71392958196524,10.8890984861323,12.6152693040884,6.02707521739722,8.42357378338128,9.31203322427019,39.9718716360109,1.52234282769651,3.0585488285695,2.84823593587081,1.42939065274673,3.29089818468955,0.648473311192717,2.16012574895246,3.17250070517708,15.2758421712287,8.66231869737023,8.57640755933611,0,0.577076851905779,3.62823401076912,1.75368900001705,3.99158742865633,2.48956981172077,8.04359614350755,5.51857298466744,3.65036331547496,1.36940807419915,0.94007937463814,15.038068625404,3.21654377823046,0.963528450622197,0.605399121573143,0.851692475380653,2.74804275804612,3.6868891717015,2.23676107892416,3.00328455081435,0.976940477010201,4.17609260842864,1.23087398947712,2.97501246323581,4.66300755196948,0,10.6670108032685,23.1482923249593,22.0876149584114,3.23185814404687,5.11445064251544,41.5415403443581,18.114845530791,33.1733558267171,24.8536911941574,14.7702887231038,25.2670760401996,4.12009685566899,9.50064336575971,35.8646378851926,9.66993704359017,1.51159648712566,21.783229372959,1.84627208191604,29.5487608278717,13.1207792675097,4.65455054156584,0,19.5313943161129,0,16.6705485216955,15.5093239375235,16.9765619636188,0,7.55240507147176,5.68489999975272,23.1999864139134,10.1276168974095,9.66163871112512,8.74634422541365,4.82640722538051,5.54048765428183,11.8064996554639,22.143534645346,19.1748337414399,18.30980835805,11.0579259931225,15.9595714234916,16.8926755808559,5.77373856650648,6.97118721393016,23.7006796191695,14.9264093159572,2.99733075704478,7.27036919719154,5.3237212241784,22.6490823409663,21.0674464824283,7.99552164027952,2.04386596391473,3.61054589708557,2.32696354660219,3.83512623049207,2.35275041181287,4.02771808742022,5.50285824900137,2.06617552674492,14.7698645169619,27.0966461544185,5.93682900022551,5.62610463329437,7.96209544862804,9.99570478887733,9.16545217400438,5.63390144493182,2.59484271787656,3.23708043466912,23.0511874793915,8.02577647298789,16.8670400922244,0.182454789215666,6.45693242475896,5.82672910881823,12.2321164883311,15.7287930863263,3.0607276163049,21.5466236533144,4.0587323241913,5.4954741440541,21.9335777993371,13.901662146771,13.1851825731035,7.16834578637753,25.6148591426813,13.5901179552876,20.6536088618806,7.64340699832146,10.0118087567463,15.3759468052987,14.2748406951442,3.09620260125072,4.01991243974021,3.94154193855404,16.1001767370776,7.50177076877752,15.8186518546373,15.7598213343764,4.76915068087175,14.0549967022051,3.12882212375685,18.5166874781043,16.4358805949301,8.39200360244947,7.2045208577053,26.8015635028243,2.05913997434357,1.4405479798815,21.4956886528198,4.71388069233591,14.5417500498767,11.4017102480443,6.42588771108827,10.1132706465532,22.815970970972,18.892942287095,3.83239764200917,24.0668647195176,2.36598618851383,22.3425921017803,16.4995505288412,14.3574604915363,20.3672580508971,27.8996931288771,24.9952032334897,24.9922517650622,56.5670817161574,2.32991899054908,8.03588459533681,8.65366513002248,8.4928465256273,11.1223054111666,0.846733320657845,15.1093641063768,15.5271882967196,4.1795818600905,11.0031549277787,9.13968743664207,7.19916452964801,8.51182150013745,12.5144086715531,7.04412843958459,23.4052950678619,15.3167397354194,16.0512511509498,8.96436696664224,9.59575986597226,17.1526878329608,23.1732189627901,8.39086174260675,9.23099322981312,12.963322368019,10.7773828836105,14.3676229874985,19.4559274175933,19.9353985488943,7.9318464064088,6.74140274919179,7.95041333473328,20.9438389305712,14.0166557847251,9.40977608363812,0,21.4642699261066,19.3361295272589,13.2556497711103,7.44249032717926,3.95223263795889,2.55764456599881,1.91502377331055,21.760712134779,16.7962228995209,20.5251536431519,9.50830629058433,6.91038023501031,10.6328181596038,11.3484426358826,10.8916109714655,22.9363678276028,22.0748812558336,21.7337410294842,8.71596400098254,11.748158348438,7.88575411216569,6.28023733798928,15.057012460683,2.34167452903441,5.50699908721136,13.1344226540449,19.1644914074724,20.5278168755967,11.9323893323306,12.0752592841236,17.7962244319307,17.6206852665631,13.913244986218,13.0567248489536,21.7347070484762,13.8588187432421,26.5383836176527,16.768399342636,14.5147172744299,27.1158548849155,24.0002728433398,36.9633718133157,25.5139492153093,13.8336049289585,18.3667145794585,22.7710380930076,25.9858905531956,30.6533834297934,16.0011105865261,22.3207208368815,25.2562116574439,16.4040367697246,12.5202889764747,10.7220795687463,5.74187442323465,17.6830621899572,10.4185113445725,3.42631386309055,13.2525742400301,6.48483039038042,6.1399533882038,5.12398523243055,7.33073345429476,8.27817959200056,18.9618723755081,7.59946751808637,9.41965864149885,10.2311242752281,2.53318401491205,4.51740457065435,5.23409261618701,16.3804924423206,9.09359762388761,4.43755459053117,2.39984875025916,1.60037594541211,2.2387947355906,3.97261167496785,3.31390710453313,13.0087942179083,20.5285495810881,1.66262682694747,7.76338642056109,1.57265941855896,3.38549878395243,5.09197589862076,4.67664824223702,4.83349480610109,8.37967376959866,28.9383959094611,10.8040590651717,4.80342448971282,21.160556621441,11.6373281394216,18.2410999273945,14.1696576325585,11.4936378521149,11.0762836690008,2.52071696221718,12.5866199484877,11.949197776757,28.5538840518309,7.2629311690759,14.7462154184675,4.95257216008533,6.12286030596793,29.747803446439,10.3553988909015,2.58591088751157,18.7273717589651,9.88354836647248,13.2857381909626,3.40478702825849,3.60298218522213,9.75850169032499,13.5075169236789,9.37293718336617,10.127653028558,15.2832102567315,3.82882366312754,12.061670870858,25.306770097854,14.9490557705678,14.5649167509139,15.5353532404703,8.4070930554706,10.3184152720227,7.74051450594412,20.4015451374069,3.22655165156182,20.4070731230528,17.0604029771848,11.2471442792472,5.67330436243047,4.6717188794669,15.4631392915513,27.3381126453843,1.96190514319652,6.39211104356647,11.0123071521497,26.2763428337878,44.3869339337036,1.10609528212909,39.1733603490582,5.56346471368254,12.0256704709538,8.08143040235844,15.0232259842676,9.67763526539729,7.744092458765,2.95830001826413,5.0275908807903,10.1612892045823,12.6008777699228,15.2001128975517,7.64431151181946,22.0355200641651,3.92600934460972,5.36438869921985,5.82685953469105,10.3689434924809,1.1598144313382,9.22850886812365,8.4218206846358,3.18321240258189,8.91900680831764,6.32498059418176,4.83738273679888,7.09525364763366,7.48589333647063,11.5836567067097,2.35158648180761,17.6506791662812,4.24217784782927,26.6979515276326,17.228691218971,10.9890489171684,28.7176823822411,10.5261988137436,11.6668777232175,2.99823467774787,16.7840702289318,3.17605384544123,2.08627553391837,9.49437304720472,16.972983485968,23.7943708031409,5.67977623895465,11.7625278030282,3.9271562130634,15.3417783749466,20.8317210173381,18.9492007738881,15.5745562364564,8.57931688878537,4.26135730658413,5.06794004045748,3.05966489225945,1.3360870263278,2.48116228744081,2.25636785363138,15.4588544365208,9.37874455546625,13.2667110313405,17.3767433047984,10.2352311312471,13.0935437305057,6.3943020737646,10.4285520017041,6.50364802967558,18.139440109277,19.4032501399891,13.0630048738177,7.1868993227909,7.81283814969215,13.1968857922524,14.3043953314786,14.0827654696986,18.0369214533339,15.4457825829552,7.63514217905989,14.0784565442073,22.4924257296474,21.9723936290499,12.6493787095247,9.45986829877823,2.56454793842586 | |||
|short_description=p2@ITGAV | |||
}} |
Revision as of 07:26, 21 January 2014
Short description: | p2@ITGAV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGAV_5end |
Coexpression cluster: | NA |
Association with transcript: | -41bp_to_ENST00000544640, NM_001145000, NM_002210, uc002upq.2, uc010frs.2_5end |
EntrezGene: | ITGAV |
HGNC: | 6150 |
UniProt: | B4DYQ7B7ZLX0P06756 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.73e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
developing anatomical structure | 2.64e-13 | 581 |
embryo | 3.30e-13 | 592 |
embryonic structure | 1.97e-12 | 564 |
germ layer | 1.89e-11 | 560 |
germ layer / neural crest | 1.89e-11 | 560 |
embryonic tissue | 1.89e-11 | 560 |
presumptive structure | 1.89e-11 | 560 |
germ layer / neural crest derived structure | 1.89e-11 | 560 |
epiblast (generic) | 1.89e-11 | 560 |
structure with developmental contribution from neural crest | 3.08e-10 | 132 |
anatomical conduit | 6.08e-09 | 240 |
epithelium | 4.06e-08 | 306 |
cell layer | 7.35e-08 | 309 |
splanchnic layer of lateral plate mesoderm | 1.21e-07 | 83 |
organ component layer | 2.45e-07 | 66 |
tube | 4.33e-07 | 192 |
adult organism | 5.13e-07 | 114 |