FFCP PHASE1:Hg19::chr2:204400113..204400149,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65059 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14436 | |||
|TSSclassifier=strong | |||
|UniProt=Q70E73 | |||
|association_with_transcript=0bp_to_ENST00000319170_5end | |||
|description=CAGE_peak_3_at_RAPH1_5end | |||
|id=chr2:204400113..204400149,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.60e-07,48;CL:0000234,8.60e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.01e-25!659;UBERON:0000480!2.25e-24!626;UBERON:0000467!6.03e-24!625;UBERON:0000062!6.47e-17!511;UBERON:0002050!1.01e-15!605;UBERON:0005423!1.01e-15!605;UBERON:0000923!2.47e-15!604;UBERON:0005291!2.47e-15!604;UBERON:0006598!2.47e-15!604;UBERON:0002532!2.47e-15!604;UBERON:0000922!2.70e-15!612;UBERON:0004111!1.38e-12!241;UBERON:0000926!4.11e-11!448;UBERON:0004120!4.11e-11!448;UBERON:0006603!4.11e-11!448;UBERON:0000025!4.52e-11!194;UBERON:0000477!7.35e-11!286;UBERON:0003914!3.61e-09!118;UBERON:0000483!7.10e-09!309;UBERON:0000119!2.05e-08!312;UBERON:0004872!2.83e-07!84;UBERON:0000475!3.25e-07!365;UBERON:0000055!5.65e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000923,2.32e-15,560;UBERON:0010316,2.32e-15,560;UBERON:0005291,2.32e-15,560;UBERON:0006598,2.32e-15,560;UBERON:0010317,2.32e-15,560;UBERON:0002532,2.32e-15,560;UBERON:0002050,5.11e-15,564;UBERON:0005423,2.77e-14,581;UBERON:0000922,3.61e-14,592;UBERON:0004111,4.59e-12,240;UBERON:0000025,1.70e-10,192;UBERON:0003914,6.57e-09,117;UBERON:0000483,6.54e-08,306;UBERON:0000926,9.32e-08,315;UBERON:0004120,9.32e-08,315;UBERON:0006603,9.32e-08,315;UBERON:0000119,1.76e-07,309;UBERON:0004872,4.30e-07,83;UBERON:0000055,9.26e-07,68 | |||
|phase1_expression=5.63202975738726,4.92431204949261,10.007762690814,7.00513088471913,3.5756887554183,6.97870819280295,2.53299878168311,7.58063848112197,3.13422753839806,8.10921990454979,4.88460817580699,9.17453762946723,6.33040747748289,3.58922423584135,7.62213964174206,1.34465029290355,1.20538905604795,0.730310090387373,1.95173119516203,6.03293184576261,5.30401797235058,8.14982275843028,7.44213566540748,11.6343261311952,17.9525974620568,0,0.0821005894499457,0,4.72037132218685,2.68680578668049,6.34746105595912,7.35536979583142,6.024118375565,6.65557218300218,0.309868802321207,0,0.293600439334847,9.97191735357379,8.02177789880567,4.12320654360118,9.40444991807682,3.88672399222775,8.24241816429397,5.52513307362346,7.55751887377619,7.76268995801012,24.1726198381912,15.6243797448294,15.7950249156503,15.5353891853961,11.7833925003386,8.51336027598907,32.0613483085055,16.1371170895957,14.8969135253776,10.7298133539285,5.73102915121476,5.16864014223695,35.8118154073956,14.4418062184242,12.7867425159808,5.60747210317417,8.17800996248691,7.2458207590558,42.3705488397733,28.9366464592481,24.912889959823,10.0499466102697,15.644487552606,8.47036494349955,28.4537766237683,24.6746016111668,18.6712808590122,4.43636101255078,8.2915676986367,5.45112478321777,2.80821577866238,2.85336096398862,3.05378614724452,7.98035682475496,9.74691718275542,8.40255107317316,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,5.04457706683382,0,0.786839080455332,2.35806457649499,0.616804496998528,1.5046784585161,0.977766799900771,0,0,0.891283655081389,0.883817722424512,1.32920336750173,0.541607727530031,2.5618263945135,1.1705341280389,0.986627427622057,0.276350017785848,0.869409257205157,0.296573126324121,0.802622484269139,2.09071047609954,0.566546713487831,1.14966148080576,0,0.253019692019503,0.318565414324097,0,0,0,0,1.24930726552346,0.236777252044017,0,0,0,0,39.0090986102339,15.4261197731836,11.7633556896048,7.95166135246046,11.5307719446255,8.98048417557107,25.4491503056352,42.3372337163293,10.9660387910319,9.75609348835281,10.2766699260957,11.5261586437987,4.00724817121796,3.33705998505986,8.11368484136708,10.2736545006568,4.25465473660369,1.19245312152671,0.571994910780128,0,13.1183188862025,10.3228151412735,12.1499175562658,21.4817017931124,7.55098985177831,7.15306909044175,8.35979866147242,13.6960882359744,18.1440793970222,14.3929863488808,6.0424397566372,9.88353737434066,10.4946684745713,7.35326160691737,5.67099363517232,14.9130546234413,11.2264686313085,13.5133776579987,16.8648301212472,29.427235446612,11.3585081236853,0,0,4.36094052142534,14.9091585508596,5.44511200157693,14.9622374318937,20.078563452417,7.4480360261655,11.7742296029885,9.60740961567345,4.44001587150888,15.2493407345885,8.75619368452972,14.0577236677575,4.8434376846378,5.18558332031999,7.96692868234909,5.30672130611545,6.84566185853339,4.78235777765763,8.57271840099484,8.25552016277471,6.46073710830343,5.51216262388212,3.0708579327942,8.57603983758853,3.56400857184616,10.6324779589779,34.586131753645,17.965453545406,4.71341119071385,6.6312815532141,7.48073111807294,14.0472838681868,9.80760946556863,14.8735678317531,3.62982986112067,18.4771324759528,12.1727711626583,19.0738711043606,13.5040993237981,14.324301564143,14.1702297025096,12.2837125178849,12.4894485858537,8.28214543870188,21.2044370365056,14.451834086841,10.6686397500416,16.3304412557643,5.64211750074785,5.93462073086707,2.31913023795956,4.09119180886252,1.72082757233402,3.17131635936948,2.51806559810822,2.78865462886844,2.798848485415,1.26160425437814,4.74470566798579,12.5159625863853,8.36213219650751,5.52539685409922,15.3241416250553,4.33127689001751,3.43089720115547,2.69735504124963,2.89213235860178,3.639701100169,2.39667388501647,4.50814176311084,4.85392709376592,4.12065076763227,3.8474715694639,22.8828190933641,7.01208869017229,12.7587943512734,13.2307840246988,49.434463580514,15.725235466842,24.813176080619,0,10.0850519605353,3.60292401626904,2.85350742062426,4.49607013030478,6.63491217916764,7.68484094815796,3.58389135841357,3.11980435583874,10.1031939417691,2.55046890945169,7.39674773685676,5.91902435820403,5.55582615091933,10.8444866773721,6.3216351836742,10.3018339451385,14.7730203652438,5.6161023633417,8.76923857503497,3.74935335947108,1.6798212819886,1.70130116690864,7.6124744297421,5.81267877027924,6.9008882249738,1.97065295158377,0,1.4512968087854,0.288239906833923,0.88369703398466,6.22279364063257,6.875791660049,5.86087236050235,5.13217338068116,3.90744472272629,4.50514586765876,1.71495859578347,4.93376771119587,1.74384027533312,3.74025257686845,9.95392211334889,10.7296933755565,3.381211010224,5.31876233169741,5.2003718455683,11.8315392160585,4.25547396069835,9.85762062359568,10.7233495243611,5.42621605391443,7.40916303102692,2.60588947434988,8.17401482107855,2.37585561880029,13.5647719676814,7.84380112740265,16.1956245714932,9.72990245129524,12.5564272858032,12.6500363689819,9.82461907515489,4.59447743336456,17.1164286048862,6.9495027200438,12.328579353023,14.3248770591916,0,0.394061520403854,0.431255149719035,0.128343036279748,7.87693335089637,14.3153839243384,3.09315525111078,5.86306928670221,5.10351001322531,0,0,0,6.99341502799097,5.00170521059677,7.32415563989286,5.61521326133179,6.42344359669782,3.6271555457805,29.5196365781637,22.5709574795789,6.82222512167955,7.24311499047534,13.9487375692442,28.0241136183389,5.47366771148922,2.93701736194111,2.74514739048685,2.68798433959754,2.80428461064202,2.34800627167578,3.94065842880137,1.66435439510497,6.04780586659361,7.44323423456331,14.8858114089421,8.13914273855913,14.0953064181271,8.18731598506726,13.8334372183502,1.48418066444991,6.78522652731684,6.74734556189883,6.24166385704949,8.30807086693794,6.50778119375772,9.91047486651302,1.40354529212299,6.16942625870505,5.51109351190112,8.19410256030227,7.6052160676466,9.47519187105565,5.93018095703994,5.49044838423799,4.38417673959782,4.85537492907228,6.8240030442538,5.78318597940153,7.55705706357488,10.7959076883203,5.68987518842091,7.02365683396795,6.88165937221603,4.15538004464362,4.70136984916574,0,0,1.79515087581472,3.93617574839647,6.50756789328606,20.1960382829536,12.0871693560213,11.1387824892794,4.59412430396938,1.95018073810956,4.82051789532479,7.34697459020127,9.7050628782226,9.51722783302003,7.30533834168012,6.33779444722814,12.1814022887952,9.8010621528516,7.21159488738573,3.96683796866347,6.53446229041361,15.4411382118447,7.89030690673289,11.1562931831349,21.0924272376529,11.1525963225696,10.1651081458109,9.58150854570639,12.179061889051,8.71023829788424,5.00937103596969,4.46590043231601,6.01120906965579,19.8255401680778,5.37385361753801,12.4102306529837,19.7286013714081,6.27958912159384,8.09426059124916,8.23611089208164,7.7756185548153,8.28948174450596,15.8510321173008,3.79132610615083,2.92580243453754,5.84912375115083,10.5650146756755,4.36799716505554,6.50464986987079,9.04064932961942,13.232768245107,8.62470667813585,7.45366504931397,4.05142873986681,1.31178950409327,5.47858017799301,6.50629346009475,6.19730325570931,3.01163839628508,3.7334635584986,7.49009208110625,6.03093808920016,5.2776908824416,9.22025700287725,2.65631221636001,3.84928192269481,8.94865648347262,2.68120910214315,6.53345909167936,24.289100600409,4.73555909938353,6.73885902670502,6.65145230305014,5.97280840538095,0.507447609232169,0.764637207142375,2.84823593587081,0.476463550915578,1.64544909234478,0,0.540031437238115,0.79312517629427,2.35012956480441,8.66231869737023,6.61608583148786,0,0,5.12221272108582,0,0,0,0,0,0,0.456469358066384,0,0,0,0.963528450622197,0.605399121573143,1.27753871307098,0,0,0.223676107892416,0.166849141711909,0,0.556812347790485,0,0,0,0,3.18138918693974,16.9949487955397,6.67482869622324,3.45474491260183,2.84136146806413,19.8157922332283,2.96964680832639,11.3649459776716,0,7.31480965334666,11.0195617972677,1.81284261649436,10.9785212226557,19.7255508368559,9.11736921252787,2.26739473068848,6.23838963263144,0,18.0402960843848,7.18946809178615,10.2042069565097,0,14.5992240342662,0,14.4478087188028,12.6013256992378,7.14314355846255,5.98841394003583,14.3235268596878,9.35821999959294,29.7249825928265,2.61724931056649,23.6455894772273,11.110221043093,7.92909758455369,9.91455685503065,11.4592496655973,7.08593108651071,4.10027891326387,9.15490417902499,11.9425600725723,7.38869047383869,14.4794362121622,4.24860007724062,8.22600091243759,17.3907584218581,12.4196840873231,6.9169171316418,5.83424688663519,4.0199527611143,11.4840417503491,4.76307485689684,11.1937302963913,0,0,0.166211681900156,0.225595660617181,0,0.503464760927528,0.37950746544837,0.476809736941136,2.95397290339238,3.10142335502381,15.4074847862995,3.89499551535764,7.96209544862804,10.437992611394,7.94339188413713,3.85477467284809,3.83048210734159,3.9680340812073,5.52689290441552,9.63093176758547,3.51396668588009,0,5.47860933009851,7.76897214509097,8.68085686268659,12.0990716048664,29.995130639788,15.2279656904656,1.80388103297391,1.9700756365477,7.97584647248622,9.26777476451397,8.47618879699508,4.77889719091835,1.13843818411917,27.5962599296146,4.33899345837827,10.6811713181672,4.87531556850254,14.1528601276044,7.73937146122274,3.57998425769615,6.65112785484289,2.87404099686232,9.60191263235352,22.3288000529496,12.8809022244904,9.45589280062581,6.35886757449567,11.2693216801464,5.47543871657448,5.61111741760736,19.4242225212811,4.59562102038899,8.78951544640046,5.1541468274662,5.66263492944483,6.48246590946674,8.44917241844941,5.89235086541989,14.9494626680975,14.9582070226636,6.22189127581563,10.4022212364547,4.80336230967832,4.51787750343577,0,33.9514698721766,0.525774708558629,24.2975689106861,11.4580212005842,35.1757782042639,5.19165401297377,7.2968428183217,9.15002975511677,18.0723540989294,10.8089965062721,4.65983798109815,6.22387140227067,5.93394180344398,5.66189768375153,2.46068703786872,0,5.56660782866512,6.6739668994672,4.34033500855552,5.50157746388935,2.49264202817511,130.034909316767,138.510549865873,13.2434033514494,4.02521625119119,7.72295931532142,16.5756498506594,5.80801850856736,11.4743897173021,24.9489756515279,10.0057345692271,5.95882773328889,4.068296602476,1.62899880526114,3.45688596480507,3.26587360109409,2.39460383124975,0.164185041498678,2.89659637035217,7.25197385728804,12.1638353952808,19.8760333368332,8.14482625077768,8.33065390978947,11.4628181382501,4.9337051562167,19.221734262185,49.5193561063948,9.5274982729855,5.95399226174341,13.0423677052643,0,4.46838880439127,20.1286587246705,14.2893239592939,11.6411319170115,15.4100136433608,8.00975890876195,6.2024772597689,8.78589107294135,6.88550118885749,5.16068276121064,6.76667214374799,8.258821591204,5.25724812757677,3.7494122388632,8.34070146479063,9.99128667407386,4.23478475456709,1.87333962322753,0.724605143054126,5.07466329815372,6.77768598556951,6.65767033803136,5.87149316352776,6.0376296420618,7.11848977277229,11.4420034198462,21.9284839456697,9.01535763380127,6.50562659954389,5.73468361789329,8.99606224327209,4.81315166316404,9.95294898818053,12.2287188696678,13.5653716071051,13.2226695917552,24.3715335788029,9.76489759691188,4.36436782086143,7.62614955001668,13.4569790364763,20.700986212328,9.60066635191569,4.12074846219351,6.73498977531838,35.3317715040223,10.0162311811798,3.64550705337374,5.74187442323465,5.44094221229454,3.47283711485751,12.7263086343363,5.37266523244462,4.63202170741458,8.77136198314828,6.71418754594348,4.05119480368921,3.7167336943676,6.14979644611072,3.10887307558079,5.1656192550155,9.12505678601423,22.0192148988509,17.2724292407372,11.6131429921649,8.51785607000673,2.21195617878347,7.8185485642692,4.19973531295353,0.320075189082423,7.74967408473671,10.215287164203,2.57748330352577,7.97313194000834,11.1973906805935,5.88314107996798,5.49906538123077,4.2461804301092,6.98941684428889,2.54598794931038,11.6916206055926,2.10690799240304,3.35186950783946,10.8121479222162,0,2.40171224485641,8.11154670488573,11.6373281394216,8.7351746131185,8.5017945795351,7.34315751662896,9.64046911931549,25.963384710837,11.5492611615244,8.39673357285626,2.85538840518309,1.37406805901436,6.84224395416894,6.42000094825876,5.19865497676522,20.594633155227,19.3300779296828,4.37615688655804,7.52103283492572,4.84092164888448,4.68908406739856,6.28576066755414,6.05956094787358,6.50566779354999,10.265712861996,6.24862478891078,8.26747186004736,10.3367770616068,24.6138664058199,8.77212426971492,10.9166459245645,3.16568239847317,2.8107734080711,2.67850917939143,2.69026977775059,12.7462776889693,13.6597314810779,10.6442844195167,0.345701962667338,21.9504652079896,8.15636795721981,11.31291705281,3.66400906740301,4.3380246737907,9.89012969916477,4.24212092773205,3.64353812307926,11.8710633666234,3.88669664193519,7.6440270061928,11.3647705240884,0.94808167039636,2.55731135809876,15.6472445072321,23.2496295771773,18.8566709388364,15.5353814155494,13.8251932362818,11.6161386881475,6.50826004018109,5.87972492838188,8.04435395362765,8.47695413612985,10.5470171125869,7.64431151181946,17.5613027922534,6.87051635306701,4.02329152441489,0,6.87840805936855,28.995360783455,13.1141968125968,7.48606283078738,5.57062170451831,6.064924629656,3.27543637912984,8.35547927265261,7.397179334767,8.33480907565802,10.053739783182,9.87666322359198,9.31563622664841,8.24867914855691,6.47817941479319,5.04978880556046,11.4117046447518,15.803221665967,20.3005262836484,35.1295489455996,0,4.6424024037471,5.29342307573538,2.40724100067505,17.5280733179164,11.009502801709,4.30018749454354,3.31320280605688,10.0627405482554,17.4540276136151,8.99345628876181,8.55588541783528,5.0839319149456,4.75889218336168,5.29898984307331,3.27796715891087,4.43444753540029,6.83325159271278,6.14600032110789,11.3030726427859,12.7860845039111,10.0785668630258,14.2020988982775,2.48750831837634,4.55105181792339,12.3675709502569,26.6632163239389,2.84191203278427,5.52464957233135,9.97973576967459,24.313214462259,24.0519454860281,13.7161551175086,8.21359922604674,5.79227655925453,11.3321084520429,15.9676971142086,6.91927783193283,15.2620104605133,7.7228912914776,4.31160970111617,7.03922827210363,14.1800075252125,17.4965356675768,13.3151354837103,8.65477312441413,0 | |||
|short_description=p3@RAPH1 | |||
}} |
Revision as of 08:01, 21 January 2014
Short description: | p3@RAPH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAPH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000319170_5end |
EntrezGene: | RAPH1 |
HGNC: | 14436 |
UniProt: | Q70E73 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.60e-07 | 48 |
phagocyte | 8.60e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
germ layer | 2.32e-15 | 560 |
germ layer / neural crest | 2.32e-15 | 560 |
embryonic tissue | 2.32e-15 | 560 |
presumptive structure | 2.32e-15 | 560 |
germ layer / neural crest derived structure | 2.32e-15 | 560 |
epiblast (generic) | 2.32e-15 | 560 |
embryonic structure | 5.11e-15 | 564 |
developing anatomical structure | 2.77e-14 | 581 |
embryo | 3.61e-14 | 592 |
anatomical conduit | 4.59e-12 | 240 |
tube | 1.70e-10 | 192 |
epithelial tube | 6.57e-09 | 117 |
epithelium | 6.54e-08 | 306 |
mesoderm | 9.32e-08 | 315 |
mesoderm-derived structure | 9.32e-08 | 315 |
presumptive mesoderm | 9.32e-08 | 315 |
cell layer | 1.76e-07 | 309 |
splanchnic layer of lateral plate mesoderm | 4.30e-07 | 83 |
vessel | 9.26e-07 | 68 |