FFCP PHASE1:Hg19::chr3:106484411..106484418,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:106484411..106484418,+ | |||
|id=chr3:106484411..106484418,+ | |||
|ontology_enrichment_celltype=CL:0000359!1.63e-34!32;CL:0000055!3.14e-28!180;CL:0000192!1.50e-24!42;CL:0000514!1.50e-24!42;CL:0000680!8.58e-23!57;CL:0000056!8.58e-23!57;CL:0000355!8.58e-23!57;CL:0000187!1.45e-22!54;CL:0000183!1.09e-21!59;CL:0000393!1.61e-19!60;CL:0000211!1.61e-19!60;CL:0002539!1.46e-14!10;CL:0000222!5.07e-14!119;CL:0002540!1.63e-13!6;CL:0002595!3.64e-12!5;CL:0000220!7.53e-12!246;CL:0002321!1.20e-11!248;CL:0002494!5.45e-10!16;CL:0000144!8.79e-10!625;CL:0002371!5.05e-09!591;CL:0000548!6.01e-09!679;CL:0000004!6.01e-09!679;CL:0000255!6.01e-09!679;CL:0000012!8.23e-09!682;CL:0000057!1.29e-08!75;CL:0002592!6.24e-08!3;CL:0000128!8.88e-08!7;CL:0000126!8.88e-08!7;CL:0000127!8.88e-08!7;CL:0002453!8.88e-08!7;CL:0002092!9.30e-08!10;CL:0002603!1.71e-07!3;CL:0000048!2.69e-07!430;CL:0000003!4.32e-07!722;CL:0000723!5.56e-07!436;CL:0000064!8.56e-07!3;CL:0005012!8.56e-07!3;CL:0000067!8.56e-07!3;CL:0002304!8.56e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.55e-55;32!CL:0000192;4.84e-32;43!CL:0002595;2.57e-22;5!CL:0002539;1.27e-17;10!CL:0000187;1.82e-16;55!CL:0002589;2.82e-15;2!CL:0002596;8.70e-15;2!CL:0000393;1.14e-13;61!CL:0000211;1.14e-13;61!CL:0002540;1.19e-10;6!CL:0002592;1.74e-10;3!CL:0002594;3.10e-08;4!CL:1000306;5.64e-08;4!CL:0002547;5.64e-08;4!CL:0002494;4.26e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.26e-60,32;CL:0000192,5.62e-44,43;CL:0000514,5.62e-44,43;CL:0000187,1.16e-33,55;CL:0000680,9.47e-32,58;CL:0000056,9.47e-32,58;CL:0000355,9.47e-32,58;CL:0000393,5.02e-30,61;CL:0000211,5.02e-30,61;CL:0002595,2.24e-22,5;CL:0000222,2.54e-19,121;CL:0002539,1.21e-17,10;CL:0002589,3.37e-15,2;CL:0002596,5.52e-15,2;CL:0002540,1.19e-10,6;CL:0002592,1.78e-10,3;CL:0002321,3.23e-09,250;CL:0002594,3.10e-08,4;CL:1000306,6.48e-08,4;CL:0002547,6.48e-08,4;CL:0002494,4.89e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;4.84e-32;43!CL:0000355;6.36e-14;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!1.56e-34!42;UBERON:0003509!1.56e-34!42;UBERON:0004572!1.56e-34!42;UBERON:0004573!6.28e-33!33;UBERON:0004571!6.28e-33!33;UBERON:0001981!2.38e-27!60;UBERON:0007500!2.38e-27!60;UBERON:0004537!2.38e-27!60;UBERON:0006965!2.38e-27!60;UBERON:0004872!3.42e-26!84;UBERON:0002049!4.76e-23!79;UBERON:0007798!4.76e-23!79;UBERON:0003914!1.24e-22!118;UBERON:0000055!1.41e-22!69;UBERON:0004535!3.39e-21!110;UBERON:0001134!9.25e-21!61;UBERON:0002036!9.25e-21!61;UBERON:0003082!9.25e-21!61;UBERON:0001009!2.48e-20!113;UBERON:0002385!7.65e-20!63;UBERON:0001015!7.65e-20!63;UBERON:0000383!7.65e-20!63;UBERON:0004290!4.68e-17!70;UBERON:0000914!7.47e-17!83;UBERON:0002329!7.47e-17!83;UBERON:0003077!7.47e-17!83;UBERON:0003059!7.47e-17!83;UBERON:0007282!7.47e-17!83;UBERON:0009618!7.47e-17!83;UBERON:0007285!7.47e-17!83;UBERON:0000486!1.30e-14!82;UBERON:0004237!1.46e-14!10;UBERON:0004695!1.46e-14!10;UBERON:0002111!1.46e-14!10;UBERON:0004178!1.46e-14!10;UBERON:0003513!7.19e-14!8;UBERON:0000025!8.29e-14!194;UBERON:0005256!3.53e-13!143;UBERON:0003834!3.64e-12!5;UBERON:0001533!3.64e-12!5;UBERON:0000947!1.50e-11!21;UBERON:0010191!1.50e-11!21;UBERON:0000490!3.24e-11!138;UBERON:0004111!1.33e-10!241;UBERON:0000477!9.18e-10!286;UBERON:0003081!2.30e-09!216;UBERON:0001135!3.91e-09!15;UBERON:0000483!4.91e-09!309;UBERON:0000119!8.12e-09!312;UBERON:0002204!1.18e-08!167;UBERON:0001621!6.24e-08!3;UBERON:0003498!1.84e-07!5;UBERON:0005985!1.84e-07!5;UBERON:0000948!2.53e-07!24;UBERON:0005498!2.53e-07!24;UBERON:0004140!2.53e-07!24;UBERON:0009881!2.53e-07!24;UBERON:0004141!2.53e-07!24;UBERON:0003084!2.53e-07!24;UBERON:0007005!2.53e-07!24;UBERON:0004139!2.53e-07!24;UBERON:0004291!2.53e-07!24;UBERON:0000475!3.99e-07!365;UBERON:0001778!8.56e-07!3;UBERON:0001775!8.56e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.35e-53;33!UBERON:0004571;3.35e-53;33!UBERON:0001637;2.10e-37;42!UBERON:0003509;2.10e-37;42!UBERON:0004572;2.10e-37;42!UBERON:0003513;2.30e-24;7!UBERON:0003834;2.57e-22;5!UBERON:0001533;2.57e-22;5!UBERON:0007500;3.25e-21;56!UBERON:0001981;3.25e-21;56!UBERON:0004537;3.25e-21;56!UBERON:0004237;1.27e-17;10!UBERON:0004695;1.27e-17;10!UBERON:0002111;1.27e-17;10!UBERON:0004178;1.27e-17;10!UBERON:0000055;7.56e-16;65!UBERON:0000947;1.06e-15;21!UBERON:0010191;1.06e-15;21!UBERON:0001529;2.82e-15;2!UBERON:0007204;2.82e-15;2!UBERON:0005396;8.70e-15;2!UBERON:0002049;1.30e-13;75!UBERON:0007798;1.30e-13;75!UBERON:0003914;2.49e-13;74!UBERON:0001135;1.09e-11;15!UBERON:0003498;1.74e-10;3!UBERON:0005985;1.74e-10;3!UBERON:0001621;1.74e-10;3!UBERON:0004535;5.73e-09;109!UBERON:0000025;1.24e-08;93!UBERON:0001310;3.10e-08;4!UBERON:0004797;5.64e-08;4!UBERON:0000415;5.64e-08;4!UBERON:0007240;5.64e-08;4!UBERON:0005742;5.64e-08;4!UBERON:0005734;5.64e-08;4!UBERON:0004664;5.64e-08;4!UBERON:0004663;5.64e-08;4!UBERON:0001009;1.25e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,5.83e-58,33;UBERON:0004571,5.83e-58,33;UBERON:0001637,1.03e-56,42;UBERON:0003509,1.03e-56,42;UBERON:0004572,1.03e-56,42;UBERON:0007500,1.02e-43,59;UBERON:0001981,1.02e-43,59;UBERON:0004537,1.02e-43,59;UBERON:0006965,1.02e-43,59;UBERON:0000055,1.98e-37,68;UBERON:0004872,1.45e-36,83;UBERON:0002049,3.84e-32,78;UBERON:0007798,3.84e-32,78;UBERON:0001134,1.73e-29,62;UBERON:0002036,1.73e-29,62;UBERON:0003082,1.73e-29,62;UBERON:0002385,1.84e-28,64;UBERON:0001015,1.84e-28,64;UBERON:0000383,1.84e-28,64;UBERON:0003914,2.77e-27,117;UBERON:0004535,7.28e-27,109;UBERON:0001009,4.92e-26,112;UBERON:0002329,2.51e-25,71;UBERON:0003059,2.51e-25,71;UBERON:0007282,2.51e-25,71;UBERON:0004290,2.51e-25,71;UBERON:0009618,2.51e-25,71;UBERON:0003077,6.27e-25,72;UBERON:0007285,6.27e-25,72;UBERON:0007524,1.53e-24,73;UBERON:0003513,1.84e-24,7;UBERON:0007503,9.38e-23,78;UBERON:0003834,2.24e-22,5;UBERON:0001533,2.24e-22,5;UBERON:0000486,3.50e-21,83;UBERON:0004237,1.21e-17,10;UBERON:0004695,1.21e-17,10;UBERON:0002111,1.21e-17,10;UBERON:0004178,1.21e-17,10;UBERON:0003081,7.82e-17,203;UBERON:0000025,2.17e-16,192;UBERON:0000947,1.12e-15,21;UBERON:0010191,1.12e-15,21;UBERON:0001529,3.37e-15,2;UBERON:0007204,3.37e-15,2;UBERON:0005256,3.95e-15,122;UBERON:0005396,5.52e-15,2;UBERON:0002204,8.97e-13,167;UBERON:0004111,3.11e-12,240;UBERON:0003104,4.06e-12,160;UBERON:0009142,4.06e-12,160;UBERON:0000490,7.55e-12,148;UBERON:0001135,1.06e-11,15;UBERON:0001621,1.78e-10,3;UBERON:0000926,3.14e-09,315;UBERON:0004120,3.14e-09,315;UBERON:0006603,3.14e-09,315;UBERON:0002100,5.17e-09,199;UBERON:0000483,1.25e-08,306;UBERON:0000119,1.68e-08,309;UBERON:0001310,3.10e-08,4;UBERON:0000415,6.48e-08,4;UBERON:0007240,6.48e-08,4;UBERON:0005742,6.48e-08,4;UBERON:0005734,6.48e-08,4;UBERON:0004664,6.48e-08,4;UBERON:0004663,6.48e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,2.41077811209591,0,0.975865597581014,0.492484232307152,1.02000345622126,0.626909442956176,0,0.547497700291537,0.251085279189606,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0.378139268656271,0.221729397462564,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0.25326102332916,12.1816446348161,1.14734648299525,0,0.560677600142307,1.06748995729705,0.98667019366864,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877955241761676,0,0.150238058906597,0.113432183160021,0.179389635688862,0,0.211931901159562,0.300091096084402,0,0,0.18611685633159,0,0,0.252433774244115,0,0,0,0.705264687593482,0.339121184620975,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28603687131071,1.41849132023278,0.799266537048298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0.519254429183621,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0,0,1.46139224653261,0,0,0,0,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0.308097234229289,0.15350367472613,0.137836572484531,0,0,0,0,0,0,0,0,0,10.3888074454111,4.8792608911242,2.46426864140871,0.532306030317022,3.47973196830029,4.07713282028624,3.14874750832381,0,0,0,0,0,3.81843897511124,1.56989728039846,0,0,0,0.404364963146632,3.17020642346017,4.63384301862879,0,0.487426979262569,5.28250733783777,0,0,0,2.75682671773062,1.32687795048244,1.31535265576129,0,0,7.10186319369464,0,0.563391205064483,0,0,7.84676313258751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.149254802886874,0,0,0.189403005275089,1.25783950876288,0.889811221596536,0,0,0.466311601748341,1.18284119991707,0.63718706865481,0,0.155262956876259,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,1.62065732026684,0,2.14906609297785,0,0,0.176689145945881,0,0.506827321959218,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346576998451015,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:106484411..106484418,+ | |||
}} |
Revision as of 20:21, 21 January 2014
Short description: | p@chr3:106484411..106484418, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:106484411..106484418, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.26e-60 | 32 |
smooth muscle cell | 5.62e-44 | 43 |
smooth muscle myoblast | 5.62e-44 | 43 |
muscle cell | 1.16e-33 | 55 |
muscle precursor cell | 9.47e-32 | 58 |
myoblast | 9.47e-32 | 58 |
multi-potent skeletal muscle stem cell | 9.47e-32 | 58 |
electrically responsive cell | 5.02e-30 | 61 |
electrically active cell | 5.02e-30 | 61 |
smooth muscle cell of the subclavian artery | 2.24e-22 | 5 |
mesodermal cell | 2.54e-19 | 121 |
aortic smooth muscle cell | 1.21e-17 | 10 |
smooth muscle cell of the brachiocephalic vasculature | 3.37e-15 | 2 |
smooth muscle cell of the carotid artery | 5.52e-15 | 2 |
mesenchymal stem cell of the bone marrow | 1.19e-10 | 6 |
smooth muscle cell of the coronary artery | 1.78e-10 | 3 |
embryonic cell | 3.23e-09 | 250 |
smooth muscle cell of the umbilical artery | 3.10e-08 | 4 |
fibroblast of tunica adventitia of artery | 6.48e-08 | 4 |
fibroblast of the aortic adventitia | 6.48e-08 | 4 |
cardiocyte | 4.89e-07 | 16 |