FFCP PHASE1:Hg19::chr4:130014705..130014728,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=132320 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26406 | |||
|TSSclassifier=strong | |||
|UniProt=D6RDM2 | |||
|association_with_transcript=0bp_to_ENST00000503401,uc003igs.2_5end | |||
|description=CAGE_peak_3_at_SCLT1_5end | |||
|id=chr4:130014705..130014728,- | |||
|ontology_enrichment_celltype=CL:0000037!6.61e-38!172;CL:0000566!6.61e-38!172;CL:0002032!2.26e-34!165;CL:0000837!2.26e-34!165;CL:0000988!3.65e-32!182;CL:0000738!6.92e-29!140;CL:0002031!5.94e-25!124;CL:0002087!1.67e-23!119;CL:0000763!4.50e-20!112;CL:0000049!4.50e-20!112;CL:0000766!1.05e-14!76;CL:0000542!2.49e-13!53;CL:0000051!2.49e-13!53;CL:0000838!4.60e-13!52;CL:0002057!5.89e-13!42;CL:0000839!2.37e-12!70;CL:0000860!7.71e-12!45;CL:0000557!1.01e-11!71;CL:0000945!2.83e-10!24;CL:0000826!2.83e-10!24;CL:0002194!1.13e-09!63;CL:0000576!1.13e-09!63;CL:0000040!1.13e-09!63;CL:0000559!1.13e-09!63;CL:0002009!1.40e-09!65;CL:0000219!1.31e-07!390;CL:0000134!1.37e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000945;8.18e-10;24!CL:0002087;4.20e-08;104!CL:0000766;4.49e-08;69!CL:0000860;7.70e-08;33!CL:0002057;7.70e-08;33!CL:0000763;7.79e-08;100!CL:0000576;1.03e-07;48!CL:0000542;2.47e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.26e-38,168;CL:0002032,5.05e-35,161;CL:0000837,5.05e-35,161;CL:0000988,2.46e-33,177;CL:0000738,2.42e-29,136;CL:0002031,1.23e-25,120;CL:0002087,3.85e-24,115;CL:0000763,9.02e-21,108;CL:0000049,9.02e-21,108;CL:0000766,1.68e-15,72;CL:0000542,3.16e-13,53;CL:0000051,3.16e-13,53;CL:0000860,3.84e-13,42;CL:0002057,3.84e-13,42;CL:0000839,4.78e-13,66;CL:0000838,5.89e-13,52;CL:0000557,2.19e-12,67;CL:0000473,2.89e-12,48;CL:0000234,2.89e-12,48;CL:0000945,2.04e-10,24;CL:0000826,2.04e-10,24;CL:0002194,3.05e-10,59;CL:0000576,3.05e-10,59;CL:0000040,3.05e-10,59;CL:0000559,3.05e-10,59;CL:0002009,3.85e-10,61;CL:0000134,5.55e-08,354;CL:0000219,5.89e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;2.66e-09;42!CL:0000051;2.47e-07;53 | |||
|ontology_enrichment_disease=DOID:2531!3.14e-12!51;DOID:0060083!3.14e-12!51;DOID:1240!7.05e-09!39;DOID:8692!7.42e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:2531;7.15e-07;51!DOID:0060083;7.15e-07;51!DOID:1240;9.66e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.99e-12,51;DOID:0060083,1.99e-12,51;DOID:1240,5.08e-09,39;DOID:8692,4.58e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.39e-15!102;UBERON:0003061!2.39e-15!102;UBERON:0002193!4.26e-12!112;UBERON:0001474!7.62e-11!86;UBERON:0002371!4.56e-10!80;UBERON:0004765!6.21e-08!101;UBERON:0001434!6.21e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.85e-16,98;UBERON:0003061,4.85e-16,98;UBERON:0002193,2.13e-12,108;UBERON:0001474,1.53e-11,82;UBERON:0002371,9.47e-11,76;UBERON:0002405,2.68e-09,93;UBERON:0004765,8.58e-08,90;UBERON:0001434,3.00e-07,100;UBERON:0002384,5.58e-07,371 | |||
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| |||
|short_description=p3@SCLT1 | |||
}} |
Revision as of 03:05, 22 January 2014
Short description: | p3@SCLT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCLT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000503401, uc003igs.2_5end |
EntrezGene: | SCLT1 |
HGNC: | 26406 |
UniProt: | D6RDM2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.26e-38 | 168 |
hematopoietic oligopotent progenitor cell | 5.05e-35 | 161 |
hematopoietic multipotent progenitor cell | 5.05e-35 | 161 |
hematopoietic cell | 2.46e-33 | 177 |
leukocyte | 2.42e-29 | 136 |
hematopoietic lineage restricted progenitor cell | 1.23e-25 | 120 |
nongranular leukocyte | 3.85e-24 | 115 |
myeloid cell | 9.02e-21 | 108 |
common myeloid progenitor | 9.02e-21 | 108 |
myeloid leukocyte | 1.68e-15 | 72 |
lymphocyte | 3.16e-13 | 53 |
common lymphoid progenitor | 3.16e-13 | 53 |
classical monocyte | 3.84e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.84e-13 | 42 |
myeloid lineage restricted progenitor cell | 4.78e-13 | 66 |
lymphoid lineage restricted progenitor cell | 5.89e-13 | 52 |
granulocyte monocyte progenitor cell | 2.19e-12 | 67 |
defensive cell | 2.89e-12 | 48 |
phagocyte | 2.89e-12 | 48 |
lymphocyte of B lineage | 2.04e-10 | 24 |
pro-B cell | 2.04e-10 | 24 |
monopoietic cell | 3.05e-10 | 59 |
monocyte | 3.05e-10 | 59 |
monoblast | 3.05e-10 | 59 |
promonocyte | 3.05e-10 | 59 |
macrophage dendritic cell progenitor | 3.85e-10 | 61 |
mesenchymal cell | 5.55e-08 | 354 |
motile cell | 5.89e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.85e-16 | 98 |
blood island | 4.85e-16 | 98 |
hemolymphoid system | 2.13e-12 | 108 |
bone element | 1.53e-11 | 82 |
bone marrow | 9.47e-11 | 76 |
immune system | 2.68e-09 | 93 |
skeletal element | 8.58e-08 | 90 |
skeletal system | 3.00e-07 | 100 |
connective tissue | 5.58e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.99e-12 | 51 |
immune system cancer | 1.99e-12 | 51 |
leukemia | 5.08e-09 | 39 |
myeloid leukemia | 4.58e-07 | 31 |