FFCP PHASE1:Hg19::chr4:8203467..8203485,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1763 | |||
|description=CAGE_peak_at_chr4:8203467..8203485,+ | |||
|id=chr4:8203467..8203485,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.19e-27!140;CL:0000037!1.35e-25!172;CL:0000566!1.35e-25!172;CL:0000988!7.32e-25!182;CL:0002087!6.03e-22!119;CL:0002031!1.81e-19!124;CL:0002032!6.70e-19!165;CL:0000837!6.70e-19!165;CL:0000451!1.29e-16!10;CL:0000945!6.20e-16!24;CL:0000826!6.20e-16!24;CL:0000838!2.21e-12!52;CL:0000542!4.56e-12!53;CL:0000051!4.56e-12!53;CL:0000990!1.87e-11!8;CL:0000784!1.37e-10!3;CL:0002009!1.51e-09!65;CL:0002194!1.16e-08!63;CL:0000576!1.16e-08!63;CL:0000040!1.16e-08!63;CL:0000559!1.16e-08!63;CL:0000840!2.02e-08!5;CL:0001029!2.02e-08!5;CL:0000557!2.10e-08!71;CL:0002057!2.24e-08!42;CL:0000763!2.52e-08!112;CL:0000049!2.52e-08!112;CL:0000860!1.24e-07!45;CL:0000236!1.63e-07!14;CL:0000766!1.76e-07!76;CL:0000839!1.98e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000784;6.11e-50;3!CL:0000451;2.69e-24;10!CL:0000840;4.68e-12;5!CL:0000945;1.69e-11;24!CL:0001014;1.51e-09;2!CL:0001016;1.51e-09;2!CL:0000990;2.42e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,3.70e-50,3;CL:0000451,2.46e-24,10;CL:0000840,5.08e-12,5;CL:0001029,5.08e-12,5;CL:0000945,1.54e-11,24;CL:0000826,1.54e-11,24;CL:0001014,1.71e-09,2;CL:0001016,1.71e-09,2;CL:0000990,2.55e-08,8;CL:0000738,3.33e-07,136 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060058!1.38e-09!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.68e-16!112;UBERON:0002390!1.71e-14!102;UBERON:0003061!1.71e-14!102;UBERON:0002405!5.56e-11!115;UBERON:0004177!1.60e-10!7;UBERON:0002106!4.29e-09!3;UBERON:0004854!4.29e-09!3;UBERON:0009034!4.29e-09!3;UBERON:0002095!4.29e-09!3;UBERON:0004782!4.29e-09!3;UBERON:0003281!4.29e-09!3;UBERON:0009664!4.29e-09!3;UBERON:0002296!4.29e-09!3;UBERON:0005602!4.29e-09!3;UBERON:0001179!4.29e-09!3;UBERON:0006293!4.29e-09!3;UBERON:0002371!4.82e-08!80;UBERON:0001474!3.42e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.17e-33;2!UBERON:0005058;1.17e-33;2!UBERON:0009113;1.17e-33;2!UBERON:0004177;4.11e-14;5!UBERON:0005057;4.11e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.82e-17,4;UBERON:0005058,2.82e-17,4;UBERON:0009113,2.82e-17,4;UBERON:0003295,2.82e-17,4;UBERON:0005562,2.82e-17,4;UBERON:0003351,7.48e-12,6;UBERON:0004177,2.70e-10,7;UBERON:0005057,2.70e-10,7;UBERON:0000974,1.79e-07,10;UBERON:0003408,1.79e-07,10;UBERON:0001042,1.79e-07,10;UBERON:0009145,1.79e-07,10;UBERON:0006562,7.15e-07,11;UBERON:0009722,7.15e-07,11;UBERON:0007690,7.15e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27915072188527,3.20192298854788,3.69940672174292,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0.587200878669695,0,0.200544447470142,0,0.223915474239924,0,0,0,0,0,0,0,0,0.575384784644301,0.256160706529101,0.47296445977717,0,0,0,0.188242339542605,0,0,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0.336985893439485,0.150176892841506,0.16072558669708,0,0.19891667719909,0.182664153764634,0,0,0,0.853460445133014,0.800791974072025,0,0,1.90810750907073,0.569212969109448,0.587237189370939,0,1.32171328579026,0.560508562981536,1.84368859342554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649094787309367,0,0.132957960518865,3.57735936458013,1.71598473234038,1.85728750664782,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0.711418433484141,0,0,0,0.211673582723883,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615424027305347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208843899010911,0,0,0,0.547364367646998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5476039091159,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0.197611631897944,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0.499705779624645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,1.48554492622814,1.67601728598816,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0.406896178315738,0,0.402547587182052,0 | |||
|short_description=p@chr4:8203467..8203485,+ | |||
}} |
Revision as of 00:09, 22 January 2014
Short description: | p@chr4:8203467..8203485, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:8203467..8203485, + |
Coexpression cluster: | C1763_Dendritic_B_migratory_immature_CD19_CD34_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 3.70e-50 | 3 |
dendritic cell | 2.46e-24 | 10 |
immature conventional dendritic cell | 5.08e-12 | 5 |
common dendritic progenitor | 5.08e-12 | 5 |
lymphocyte of B lineage | 1.54e-11 | 24 |
pro-B cell | 1.54e-11 | 24 |
CD1a-positive Langerhans cell | 1.71e-09 | 2 |
immature CD1a-positive Langerhans cell | 1.71e-09 | 2 |
conventional dendritic cell | 2.55e-08 | 8 |
leukocyte | 3.33e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.82e-17 | 4 |
hemolymphoid system gland | 2.82e-17 | 4 |
thymic region | 2.82e-17 | 4 |
pharyngeal gland | 2.82e-17 | 4 |
thymus primordium | 2.82e-17 | 4 |
pharyngeal epithelium | 7.48e-12 | 6 |
hemopoietic organ | 2.70e-10 | 7 |
immune organ | 2.70e-10 | 7 |
neck | 1.79e-07 | 10 |
gland of gut | 1.79e-07 | 10 |
chordate pharynx | 1.79e-07 | 10 |
pharyngeal region of foregut | 1.79e-07 | 10 |
pharynx | 7.15e-07 | 11 |
entire pharyngeal arch endoderm | 7.15e-07 | 11 |
early pharyngeal endoderm | 7.15e-07 | 11 |