FFCP PHASE1:Mm9::chr17:47832120..47832153,+: Difference between revisions
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{{FFCP|EntrezGene=107971|HGNC=|MCL_coexpression_id=208|UniProt=Q91WJ0|association_with_transcript=0bp_to_ENSMUST00000113296_5end|description=CAGE_peak_1_at_Frs3_5end|id=chr17:47832120..47832153,+|ontology_enrichment_celltype=CL:0000117!1.02e-12!23;CL:0000337!1.02e-12!23;CL:0000393!1.69e-10!39;CL:0000211!1.69e-10!39;CL:0000055!2.08e-10!50;CL:0000540!4.20e-10!33;CL:0000047!4.20e-10!33;CL:0000031!4.20e-10!33;CL:0000404!4.20e-10!33;CL:0000221!4.41e-10!44;CL:0000133!4.41e-10!44;CL:0002319!5.47e-10!43;CL:0002321!6.21e-07!70;CL:0000220!6.21e-07!70|ontology_enrichment_celltype_v019_2=CL:0000117,4.98e-13,23;CL:0000337,4.98e-13,23;CL:0000393,2.27e-10,39;CL:0000211,2.27e-10,39;CL:0000540,6.08e-10,33;CL:0000047,6.08e-10,33;CL:0000031,6.08e-10,33;CL:0000404,6.08e-10,33;CL:0000221,6.58e-10,44;CL:0000133,6.58e-10,44;CL:0002319,8.24e-10,43;CL:0002321,6.66e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.37e-18!73;UBERON:0005743!2.37e-18!73;UBERON:0000073!1.71e-17!75;UBERON:0001016!1.71e-17!75;UBERON:0000033!1.26e-15!63;UBERON:0004121!1.37e-15!102;UBERON:0000924!1.37e-15!102;UBERON:0006601!1.37e-15!102;UBERON:0001049!4.14e-15!52;UBERON:0005068!4.14e-15!52;UBERON:0006241!4.14e-15!52;UBERON:0007135!4.14e-15!52;UBERON:0002346!4.51e-15!71;UBERON:0003075!4.51e-15!71;UBERON:0007284!4.51e-15!71;UBERON:0000955!1.01e-13!50;UBERON:0006238!1.01e-13!50;UBERON:0002616!2.03e-13!49;UBERON:0003056!2.08e-11!49;UBERON:0002020!3.45e-10!34;UBERON:0003080!2.06e-09!40;UBERON:0002780!7.16e-09!39;UBERON:0001890!7.16e-09!39;UBERON:0006240!7.16e-09!39;UBERON:0000025!8.50e-08!114;UBERON:0002791!1.85e-07!29;UBERON:0003528!1.85e-07!29;UBERON:0001893!1.85e-07!29;UBERON:0003076!3.72e-07!12;UBERON:0003057!3.72e-07!12;UBERON:0004111!5.56e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.08e-18,73;UBERON:0002346,1.76e-17,64;UBERON:0003075,1.76e-17,64;UBERON:0007284,1.76e-17,64;UBERON:0001016,2.61e-17,75;UBERON:0004121,3.89e-17,95;UBERON:0000924,3.89e-17,95;UBERON:0006601,3.89e-17,95;UBERON:0000073,1.22e-16,54;UBERON:0001049,2.70e-15,52;UBERON:0005068,2.70e-15,52;UBERON:0006241,2.70e-15,52;UBERON:0007135,2.70e-15,52;UBERON:0010371,2.55e-14,73;UBERON:0010314,2.36e-12,92;UBERON:0000955,4.90e-12,47;UBERON:0006238,4.90e-12,47;UBERON:0002616,9.82e-12,46;UBERON:0003056,1.62e-11,49;UBERON:0002020,2.00e-10,34;UBERON:0003080,1.81e-09,40;UBERON:0002780,6.47e-09,39;UBERON:0001890,6.47e-09,39;UBERON:0006240,6.47e-09,39;UBERON:0003528,1.27e-07,29;UBERON:0002791,1.27e-07,29;UBERON:0001893,1.27e-07,29;UBERON:0000025,2.57e-07,114;UBERON:0003076,2.60e-07,12;UBERON:0003057,2.60e-07,12|phase1_expression=1.60148847104794,1.39590163055744,2.72999543633722,3.0246421130683,5.50985302940982,1.84667199103079,0.700837921786577,0.774739940649458,0,0.234064526321993,0.171217968225505,0.398860794976682,0.171200729931206,0.786783621770977,0,0,0,0.157731082679119,0.274228867211478,0,7.48380953329414,0,0.261199789138935,0.95995453676044,2.52350209173887,2.8711598205751,1.29228598847722,1.07735616342945,0.760093677825496,3.2763916868791,0.665191531965914,0,0,0,1.44425809875637,1.49611180822643,0.408338712524738,0,0,0,0,0,0,2.26614272356039,2.53442328048786,3.48738829107195,3.9119567217402,1.74420125104357,1.5378032791413,3.30530828426282,1.95980990275508,1.43752564364972,0.167782606057736,0.725362142011344,0.672187598284928,2.05807548828758,1.14613375975503,4.64104883049698,10.1158230429799,8.99284664762456,9.50747105259269,3.04960078862219,3.55717918444456,1.3498495759221,2.96659908770092,3.5524005747305,4.79360176829448,4.61061966385865,2.28117147078651,3.37514845829227,1.68259969081106,13.7112472513826,6.84692476950002,4.77714116938321,4.02550978276593,3.67687514644008,17.6185409599022,11.2364857514965,9.36999852863085,7.38563211289086,9.05727671663856,4.16730696445408,14.5175159480718,12.9435400307286,15.8910177687883,9.1334861496837,9.681274294339,10.9975673036927,0.681535739998656,1.66257432234928,0.869593466105033,1.72084775396277,0.679971333707751,3.2382191498269,0,4.03224198387602,2.52799956237153,1.70430322578058,0.779358013808606,2.12003744706204,2.39433813620357,1.28326477414318,7.64415719119937,0,0.649473123033642,0.760079596425296,0,1.94112595522402,1.55362730188303,1.63286352971307,1.38788261412909,1.82679286987285,0.691846491768175,1.20578112442098,1.29347577849275,1.25666591329675,1.97755974187499,2.31358971071859,0,0.647067399789637,1.10420759230197,1.45462575940567,0,7.61230072230023,5.86450779077674,1.78819938646014,0.359445373517761,0,0.254140454146129,10.3355541189328,6.8625090422794,8.04187853522332,3.99795936442236,5.8814555185976,8.10373373782284,7.30085683804909,0.916554274652847,1.11966273549084,1.26361379216837,1.05220927943237,2.73252930221678,3.67843367093557,2.88099407688559,2.71268672104287,3.94611695077702,3.71529788826064,4.8724896771059,3.3631438196072,1.07783996466421,1.70195472151037,1.40760899331159,0.43839146485515,1.11218899690239,1.74126083261083,1.85203922767149,0.7961370672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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:107971 | |||
|HGNC= | |||
|MCL_coexpression_id=208 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q91WJ0 | |||
|association_with_transcript=0bp_to_ENSMUST00000113296_5end | |||
|cluster_id=chr17:47832120..47832153,+ | |||
|description=CAGE_peak_1_at_Frs3_5end | |||
|id=chr17:47832120..47832153,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.02e-12!23;CL:0000337!1.02e-12!23;CL:0000393!1.69e-10!39;CL:0000211!1.69e-10!39;CL:0000055!2.08e-10!50;CL:0000540!4.20e-10!33;CL:0000047!4.20e-10!33;CL:0000031!4.20e-10!33;CL:0000404!4.20e-10!33;CL:0000221!4.41e-10!44;CL:0000133!4.41e-10!44;CL:0002319!5.47e-10!43;CL:0002321!6.21e-07!70;CL:0000220!6.21e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.98e-13,23;CL:0000337,4.98e-13,23;CL:0000393,2.27e-10,39;CL:0000211,2.27e-10,39;CL:0000540,6.08e-10,33;CL:0000047,6.08e-10,33;CL:0000031,6.08e-10,33;CL:0000404,6.08e-10,33;CL:0000221,6.58e-10,44;CL:0000133,6.58e-10,44;CL:0002319,8.24e-10,43;CL:0002321,6.66e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.37e-18!73;UBERON:0005743!2.37e-18!73;UBERON:0000073!1.71e-17!75;UBERON:0001016!1.71e-17!75;UBERON:0000033!1.26e-15!63;UBERON:0004121!1.37e-15!102;UBERON:0000924!1.37e-15!102;UBERON:0006601!1.37e-15!102;UBERON:0001049!4.14e-15!52;UBERON:0005068!4.14e-15!52;UBERON:0006241!4.14e-15!52;UBERON:0007135!4.14e-15!52;UBERON:0002346!4.51e-15!71;UBERON:0003075!4.51e-15!71;UBERON:0007284!4.51e-15!71;UBERON:0000955!1.01e-13!50;UBERON:0006238!1.01e-13!50;UBERON:0002616!2.03e-13!49;UBERON:0003056!2.08e-11!49;UBERON:0002020!3.45e-10!34;UBERON:0003080!2.06e-09!40;UBERON:0002780!7.16e-09!39;UBERON:0001890!7.16e-09!39;UBERON:0006240!7.16e-09!39;UBERON:0000025!8.50e-08!114;UBERON:0002791!1.85e-07!29;UBERON:0003528!1.85e-07!29;UBERON:0001893!1.85e-07!29;UBERON:0003076!3.72e-07!12;UBERON:0003057!3.72e-07!12;UBERON:0004111!5.56e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.08e-18,73;UBERON:0002346,1.76e-17,64;UBERON:0003075,1.76e-17,64;UBERON:0007284,1.76e-17,64;UBERON:0001016,2.61e-17,75;UBERON:0004121,3.89e-17,95;UBERON:0000924,3.89e-17,95;UBERON:0006601,3.89e-17,95;UBERON:0000073,1.22e-16,54;UBERON:0001049,2.70e-15,52;UBERON:0005068,2.70e-15,52;UBERON:0006241,2.70e-15,52;UBERON:0007135,2.70e-15,52;UBERON:0010371,2.55e-14,73;UBERON:0010314,2.36e-12,92;UBERON:0000955,4.90e-12,47;UBERON:0006238,4.90e-12,47;UBERON:0002616,9.82e-12,46;UBERON:0003056,1.62e-11,49;UBERON:0002020,2.00e-10,34;UBERON:0003080,1.81e-09,40;UBERON:0002780,6.47e-09,39;UBERON:0001890,6.47e-09,39;UBERON:0006240,6.47e-09,39;UBERON:0003528,1.27e-07,29;UBERON:0002791,1.27e-07,29;UBERON:0001893,1.27e-07,29;UBERON:0000025,2.57e-07,114;UBERON:0003076,2.60e-07,12;UBERON:0003057,2.60e-07,12 | |||
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| |||
|short_description=p1@Frs3 | |||
}} |
Revision as of 00:42, 5 August 2015
Short description: | p1@Frs3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Frs3_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | 0bp_to_ENSMUST00000113296_5end |
EntrezGene: | 107971 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.98e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.98e-13 | 23 |
electrically responsive cell | 2.27e-10 | 39 |
electrically active cell | 2.27e-10 | 39 |
neuron | 6.08e-10 | 33 |
neuronal stem cell | 6.08e-10 | 33 |
neuroblast | 6.08e-10 | 33 |
electrically signaling cell | 6.08e-10 | 33 |
ectodermal cell | 6.58e-10 | 44 |
neurectodermal cell | 6.58e-10 | 44 |
neural cell | 8.24e-10 | 43 |
embryonic cell | 6.66e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.08e-18 | 73 |
neurectoderm | 1.76e-17 | 64 |
neural plate | 1.76e-17 | 64 |
presumptive neural plate | 1.76e-17 | 64 |
nervous system | 2.61e-17 | 75 |
ectoderm-derived structure | 3.89e-17 | 95 |
ectoderm | 3.89e-17 | 95 |
presumptive ectoderm | 3.89e-17 | 95 |
regional part of nervous system | 1.22e-16 | 54 |
neural tube | 2.70e-15 | 52 |
neural rod | 2.70e-15 | 52 |
future spinal cord | 2.70e-15 | 52 |
neural keel | 2.70e-15 | 52 |
ecto-epithelium | 2.55e-14 | 73 |
structure with developmental contribution from neural crest | 2.36e-12 | 92 |
brain | 4.90e-12 | 47 |
future brain | 4.90e-12 | 47 |
regional part of brain | 9.82e-12 | 46 |
pre-chordal neural plate | 1.62e-11 | 49 |
gray matter | 2.00e-10 | 34 |
anterior neural tube | 1.81e-09 | 40 |
regional part of forebrain | 6.47e-09 | 39 |
forebrain | 6.47e-09 | 39 |
future forebrain | 6.47e-09 | 39 |
brain grey matter | 1.27e-07 | 29 |
regional part of telencephalon | 1.27e-07 | 29 |
telencephalon | 1.27e-07 | 29 |
tube | 2.57e-07 | 114 |
posterior neural tube | 2.60e-07 | 12 |
chordal neural plate | 2.60e-07 | 12 |