FFCP PHASE1:Hg19::chr5:170210721..170210734,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2568 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4089 | |||
|TSSclassifier=weak | |||
|UniProt=O00591,E7EWG0 | |||
|association_with_transcript=0bp_to_ENST00000265294,ENST00000519385,NM_014211,uc003mau.2,uc011dev.1_5end | |||
|coexpression_cluster_id=C393 | |||
|description=CAGE_peak_1_at_GABRP_5end | |||
|id=chr5:170210721..170210734,+ | |||
|ontology_enrichment_celltype=CL:0002322!3.90e-08!5;CL:0000349!4.82e-07!3;CL:0002577!4.82e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.55e-16;19!CL:0002577;4.97e-10;3!CL:0002541;1.31e-08;3!CL:0002322;3.06e-08;5!CL:0002536;3.25e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.44e-16,19;CL:0002577,4.97e-10,3;CL:0002541,1.14e-08,3;CL:0002322,4.17e-08,5;CL:0002536,3.25e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.16e-18!14;UBERON:0000158!3.16e-18!14;UBERON:0003124!4.70e-13!7;UBERON:0003133!4.45e-11!48;UBERON:0005156!6.24e-11!59;UBERON:0000990!6.24e-11!59;UBERON:0003135!1.75e-10!11;UBERON:0004175!3.06e-09!25;UBERON:0000478!3.61e-09!24;UBERON:0004119!5.40e-09!169;UBERON:0000925!5.40e-09!169;UBERON:0006595!5.40e-09!169;UBERON:0001987!1.48e-08!4;UBERON:0004340!1.48e-08!4;UBERON:0000077!3.96e-08!130;UBERON:0003101!4.66e-08!22;UBERON:0000079!4.66e-08!22;UBERON:0007023!1.23e-07!115;UBERON:0000305!2.70e-07!7;UBERON:0000974!3.79e-07!10;UBERON:0006562!4.98e-07!11;UBERON:0004923!4.98e-07!57;UBERON:0001007!6.10e-07!155;UBERON:0001555!6.10e-07!155;UBERON:0007026!6.10e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.76e-17;10!UBERON:0000158;1.76e-17;10!UBERON:0000478;6.89e-15;24!UBERON:0001987;2.58e-12;4!UBERON:0000305;7.64e-11;7!UBERON:0003124;1.31e-08;3!UBERON:0000920;1.31e-08;3!UBERON:0003135;1.39e-07;11!UBERON:0006562;4.34e-07;2!UBERON:0003127;8.48e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.20e-28,14;UBERON:0000158,8.20e-28,14;UBERON:0003124,2.68e-19,7;UBERON:0000478,6.18e-15,24;UBERON:0001987,2.34e-12,4;UBERON:0004340,2.34e-12,4;UBERON:0004175,4.06e-11,25;UBERON:0000305,7.65e-11,7;UBERON:0004871,2.01e-09,8;UBERON:0003133,5.97e-09,48;UBERON:0005156,8.35e-09,59;UBERON:0000990,8.35e-09,59;UBERON:0003975,8.63e-09,22;UBERON:0000920,1.14e-08,3;UBERON:0006562,2.63e-08,11;UBERON:0003135,1.45e-07,11;UBERON:0007023,2.41e-07,114;UBERON:0000995,2.57e-07,21;UBERON:0005795,6.43e-07,22;UBERON:0003127,8.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,532.34162388123,319.158043656429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.92189496788,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579386075843295,0,2.91980922181582,0,0,0,3.86388272718252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09776335516636,0.265059536642971,2.32387885739037,4.76840853070704,1.00928340350251,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1608175918371,2.57545848628462,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,3.10992173311158,3.747118788841,2.77733353538036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00034104211935,0,0,0,0,0,0,0,14.4862299809507,0,2.39679919104214,0,0,0,0,0,0,190.667242439697,825.519779972066,679.168598818462,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0.644566922551274,0,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.33953315142039,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34060455107157,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,33.6629723480143,1967.0940458354,68.4968365681288,0,0,0,0,0,7.17292757703851,0,0,0,0,0,0.359473404589307,0,0,0.394573622547734,0,0,0,0,0,0,0,26.8249842910874,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37020365273626,17.4677086803619,0,0,0,1.52106320690811,7.33702667383415,2.83952539545773,3.73124343213044,0,0,0,0,0,0,0,0,0,142.175775906618,0.141353071433941,0,0,0.707660516026713,0,0,0,0,0,0,0,0,35.2196314077761,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.587954384486266,0,4.89234671077684,0,0,0,0,15.5182426381471,0,11.2990370390266,0,0,0,16.4263161497235,0.0801588202515337,4.90941887900511,0,0.72045208577053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99679000498991,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0.964518890790115,0.550157746388935,0.415440338029185,0,0,0,0,2.12775409707835,0.209818352539992,0,0,0,0,0,23.6469740018917,0,0,0,0,0,0,0,2.63794020620548,0,0,0,0,2.11444506695002,0.747511887973863,0.314408610199332,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,41.0570991621762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353909170043221,0.366857197043358,0.231051332300676,0,0,0,0.225630985047772,0,0,0,0.163771917510097,7.09709213841817,0,0,0,0,0,0,3.96968942711435,0,52.1270704769549,0,0,0.606965604236632,1.82129753081038,3.99160665731875,0,0,0,0,0,0,5.5730095923865,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,5.59295566466361,0,0,0.423387050190929,1.8328549483524,0,0,0.111855431797792,0,0,0,0,0,35.9426134863763,0,0,0,0,0,0,2.70109553377806,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0,0.0644578879735772,0.499705779624645,16.2484084131148,0,0,0.730336388246517,3.21110498383179,0,0,0,0,0,0,0,0,0,24.9125504077226,0.633492505057185,0.61193297845189,1.87052183685892,1.19463369395298,1.0028301571695,0.303114792872958,0,0,0,33.690969140355,5.23741749220229,1.55013383606415,1.86224142887574,0,0,0,2.61260097476354,8.21359922604674,51.2549123441011,33.1356588914165,15.9676971142086,0,0,0,0,0,29.2157051597051,0,19.9727032255654,0,0 | |||
|short_description=p1@GABRP | |||
}} |
Revision as of 09:00, 22 January 2014
Short description: | p1@GABRP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GABRP_5end |
Coexpression cluster: | C393_amniotic_Placental_Amniotic_clear_Basophils_pharyngeal_tonsil |
Association with transcript: | 0bp_to_ENST00000265294, ENST00000519385, NM_014211, uc003mau.2, uc011dev.1_5end |
EntrezGene: | GABRP |
HGNC: | 4089 |
UniProt: | O00591E7EWG0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.44e-16 | 19 |
placental epithelial cell | 4.97e-10 | 3 |
chorionic membrane mesenchymal stem cell | 1.14e-08 | 3 |
embryonic stem cell | 4.17e-08 | 5 |
amniotic epithelial cell | 3.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.20e-28 | 14 |
membranous layer | 8.20e-28 | 14 |
chorion | 2.68e-19 | 7 |
extraembryonic structure | 6.18e-15 | 24 |
placenta | 2.34e-12 | 4 |
allantois | 2.34e-12 | 4 |
internal genitalia | 4.06e-11 | 25 |
amnion | 7.65e-11 | 7 |
somatic layer of lateral plate mesoderm | 2.01e-09 | 8 |
reproductive organ | 5.97e-09 | 48 |
reproductive structure | 8.35e-09 | 59 |
reproductive system | 8.35e-09 | 59 |
internal female genitalia | 8.63e-09 | 22 |
egg chorion | 1.14e-08 | 3 |
pharynx | 2.63e-08 | 11 |
male reproductive organ | 1.45e-07 | 11 |
adult organism | 2.41e-07 | 114 |
uterus | 2.57e-07 | 21 |
embryonic uterus | 6.43e-07 | 22 |
open tracheal system trachea | 8.60e-07 | 2 |