Personal tools

FFCP PHASE1:Hg19::chr7:45952626..45952637,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=3486|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=5472|TSSclassifier=S|UniProt=Q71RC0|association_with_transcript=0bp_to_AF370418_5end|coexpression_cluster_id=C223|description=CAGE_peak_23_at_IGFBP3_5end|id=chr7:45952626..45952637,-|ontology_enrichment_celltype=CL:0002620!3.53e-11!23;CL:0002334!5.32e-11!12;CL:0000057!1.48e-10!75;CL:0002595!2.14e-08!5;CL:0000055!3.06e-08!180;CL:0000153!6.37e-07!9;CL:0000447!6.37e-07!9|ontology_enrichment_celltype_v019=CL:0002620;4.45e-20;23!CL:0000138;8.98e-15;6!CL:0000153;1.16e-14;9!CL:0000447;1.16e-14;9!CL:0000327;4.53e-12;15!CL:0000499;1.11e-10;28!CL:0002537;9.37e-10;5!CL:0000135;9.38e-08;3!CL:0000388;9.38e-08;3|ontology_enrichment_celltype_v019_2=CL:0002620,4.52e-20,23;CL:0000058,9.01e-15,6;CL:0000138,9.01e-15,6;CL:0000153,1.14e-14,9;CL:0000447,1.14e-14,9;CL:0000327,5.11e-12,15;CL:0000057,1.51e-11,76;CL:0000499,1.06e-10,28;CL:0002537,8.84e-10,5;CL:0000135,6.80e-08,3;CL:0000388,6.80e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!7.97e-09!5;DOID:450!7.97e-09!5;DOID:66!7.97e-09!5;DOID:423!7.97e-09!5;DOID:0080000!7.97e-09!5;DOID:11722!7.97e-09!5|ontology_enrichment_disease_v019=DOID:17;1.49e-09;5!DOID:450;1.49e-09;5!DOID:66;1.49e-09;5!DOID:423;1.49e-09;5!DOID:0080000;1.49e-09;5!DOID:11722;1.49e-09;5!DOID:0060084;1.92e-07;3!DOID:127;1.92e-07;3!DOID:2513;9.28e-07;1|ontology_enrichment_disease_v019_2=DOID:17,1.09e-09,5;DOID:450,1.09e-09,5;DOID:66,1.09e-09,5;DOID:423,1.09e-09,5;DOID:0080000,1.09e-09,5;DOID:11722,1.09e-09,5;DOID:0060084,1.34e-07,3;DOID:127,1.34e-07,3;DOID:2513,9.30e-07,1|ontology_enrichment_uberon=UBERON:0003688!3.63e-09!6;UBERON:0002358!3.63e-09!6;UBERON:0003684!3.63e-09!6;UBERON:0001178!3.63e-09!6;UBERON:0003834!2.14e-08!5;UBERON:0001533!2.14e-08!5;UBERON:0002199!3.65e-08!45;UBERON:0002416!3.65e-08!45;UBERON:0005631!6.02e-08!14;UBERON:0000158!6.02e-08!14;UBERON:0002097!1.17e-07!40;UBERON:0003124!1.29e-07!7;UBERON:0004457!2.25e-07!12;UBERON:0000042!2.25e-07!12;UBERON:0004923!2.71e-07!57;UBERON:0003513!4.43e-07!8;UBERON:0000478!9.05e-07!24|ontology_enrichment_uberon_v019=UBERON:0002097;6.16e-11;41!UBERON:0005631;2.26e-08;10!UBERON:0000158;2.26e-08;10!UBERON:0002199;7.09e-08;46!UBERON:0002416;7.09e-08;46!UBERON:0007846;9.38e-08;3!UBERON:0000043;9.38e-08;3!UBERON:0007845;9.38e-08;3!UBERON:0000305;4.35e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.26e-13,41;UBERON:0002199,3.47e-11,46;UBERON:0002416,3.47e-11,46;UBERON:0007846,6.80e-08,3;UBERON:0000043,6.80e-08,3;UBERON:0007845,6.80e-08,3;UBERON:0000305,4.17e-07,7|phase1_expression=1.09007027562334,0.428201047781966,0.140954404095971,4.00293193412522,0.446961094427288,2.61701557230111,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,13.373248638229,10.0267582127178,8.11140506180613,0,4.86634870302636,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0,0,0.354668382198357,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,1.61450672119976,0.85422955527427,2.11931901159562,1.80054657650641,0.721367704669072,1.28820270022815,2.23340227597908,0.168776332241266,1.16924406193438,2.01947019395292,1.56484827691909,0,3.19508633264953,2.11579406278045,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,0,0,1.30303176000821,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,1.24782516918484,0.535286966391485,0.788512075169673,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,0,0.604780586659361,1.73675465473144,0.460385919864187,0.841980283299221,0.640695746278505,1.02341449813341,0.482561763430822,0,0.308419387605311,0.532685175939381,0.246381468041427,0,0.116210378459959,0,0.40101294060657,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25924938732256,0,0,0,0,1.29726953372744,0.572499546967965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731140468893853,1.05650146756755,0,0,0,0.551365343546124,0.66343897524122,1.75380354101505,0,0,0,0,0,0,0,0,0,0.844430541190656,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,2.37571744666111,2.15012491469462,0,0,0,0,0,0,0,0,0,0,7.15391051622157,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0.23056390438806,0,0,0.957003479195758,0.183195186803725,2.66517388009317,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0.867798691675654,0.0979923974143777,0.0870592065804026,0,0.171986032471617,0,0.146178634172371,0.0821154570532092,0,0,0.225980740780532,0,0,0,0,0,0,2.59752492456769,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,1.08089965062721,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0.191915197319445,0,0,0,1.62899880526114,1.72844298240254,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0.149254802886874,0,0,0.189403005275089,0.754703705257725,0.889811221596536,0,0.302461847526478,0.15543720058278,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0,0,0.179088841081487,0.308801447160972,0,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0.443511850813194,0,0,0,0,0.118193840883968,0,0,0,0,0,2.15927591218621,10.9882888214022,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,1.0195626881269,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,1.84870251452567,3.02838593486652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0|short_description=p23@IGFBP3}}
{{FFCP
|DHSsupport=not supported
|DPIdataset=robust
|EntrezGene=3486
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript
|HGNC=5472
|TSSclassifier=strong
|UniProt=Q71RC0
|association_with_transcript=0bp_to_AF370418_5end
|coexpression_cluster_id=C223
|description=CAGE_peak_23_at_IGFBP3_5end
|id=chr7:45952626..45952637,-
|ontology_enrichment_celltype=CL:0002620!3.53e-11!23;CL:0002334!5.32e-11!12;CL:0000057!1.48e-10!75;CL:0002595!2.14e-08!5;CL:0000055!3.06e-08!180;CL:0000153!6.37e-07!9;CL:0000447!6.37e-07!9
|ontology_enrichment_celltype_v019=CL:0002620;4.45e-20;23!CL:0000138;8.98e-15;6!CL:0000153;1.16e-14;9!CL:0000447;1.16e-14;9!CL:0000327;4.53e-12;15!CL:0000499;1.11e-10;28!CL:0002537;9.37e-10;5!CL:0000135;9.38e-08;3!CL:0000388;9.38e-08;3
|ontology_enrichment_celltype_v019_2=CL:0002620,4.52e-20,23;CL:0000058,9.01e-15,6;CL:0000138,9.01e-15,6;CL:0000153,1.14e-14,9;CL:0000447,1.14e-14,9;CL:0000327,5.11e-12,15;CL:0000057,1.51e-11,76;CL:0000499,1.06e-10,28;CL:0002537,8.84e-10,5;CL:0000135,6.80e-08,3;CL:0000388,6.80e-08,3
|ontology_enrichment_development_v019=
|ontology_enrichment_disease=DOID:17!7.97e-09!5;DOID:450!7.97e-09!5;DOID:66!7.97e-09!5;DOID:423!7.97e-09!5;DOID:0080000!7.97e-09!5;DOID:11722!7.97e-09!5
|ontology_enrichment_disease_v019=DOID:17;1.49e-09;5!DOID:450;1.49e-09;5!DOID:66;1.49e-09;5!DOID:423;1.49e-09;5!DOID:0080000;1.49e-09;5!DOID:11722;1.49e-09;5!DOID:0060084;1.92e-07;3!DOID:127;1.92e-07;3!DOID:2513;9.28e-07;1
|ontology_enrichment_disease_v019_2=DOID:17,1.09e-09,5;DOID:450,1.09e-09,5;DOID:66,1.09e-09,5;DOID:423,1.09e-09,5;DOID:0080000,1.09e-09,5;DOID:11722,1.09e-09,5;DOID:0060084,1.34e-07,3;DOID:127,1.34e-07,3;DOID:2513,9.30e-07,1
|ontology_enrichment_uberon=UBERON:0003688!3.63e-09!6;UBERON:0002358!3.63e-09!6;UBERON:0003684!3.63e-09!6;UBERON:0001178!3.63e-09!6;UBERON:0003834!2.14e-08!5;UBERON:0001533!2.14e-08!5;UBERON:0002199!3.65e-08!45;UBERON:0002416!3.65e-08!45;UBERON:0005631!6.02e-08!14;UBERON:0000158!6.02e-08!14;UBERON:0002097!1.17e-07!40;UBERON:0003124!1.29e-07!7;UBERON:0004457!2.25e-07!12;UBERON:0000042!2.25e-07!12;UBERON:0004923!2.71e-07!57;UBERON:0003513!4.43e-07!8;UBERON:0000478!9.05e-07!24
|ontology_enrichment_uberon_v019=UBERON:0002097;6.16e-11;41!UBERON:0005631;2.26e-08;10!UBERON:0000158;2.26e-08;10!UBERON:0002199;7.09e-08;46!UBERON:0002416;7.09e-08;46!UBERON:0007846;9.38e-08;3!UBERON:0000043;9.38e-08;3!UBERON:0007845;9.38e-08;3!UBERON:0000305;4.35e-07;7
|ontology_enrichment_uberon_v019_2=UBERON:0002097,8.26e-13,41;UBERON:0002199,3.47e-11,46;UBERON:0002416,3.47e-11,46;UBERON:0007846,6.80e-08,3;UBERON:0000043,6.80e-08,3;UBERON:0007845,6.80e-08,3;UBERON:0000305,4.17e-07,7
|phase1_expression=1.09007027562334,0.428201047781966,0.140954404095971,4.00293193412522,0.446961094427288,2.61701557230111,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,13.373248638229,10.0267582127178,8.11140506180613,0,4.86634870302636,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0,0,0.354668382198357,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,1.61450672119976,0.85422955527427,2.11931901159562,1.80054657650641,0.721367704669072,1.28820270022815,2.23340227597908,0.168776332241266,1.16924406193438,2.01947019395292,1.56484827691909,0,3.19508633264953,2.11579406278045,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,0,0,1.30303176000821,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,1.24782516918484,0.535286966391485,0.788512075169673,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,0,0.604780586659361,1.73675465473144,0.460385919864187,0.841980283299221,0.640695746278505,1.02341449813341,0.482561763430822,0,0.308419387605311,0.532685175939381,0.246381468041427,0,0.116210378459959,0,0.40101294060657,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25924938732256,0,0,0,0,1.29726953372744,0.572499546967965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731140468893853,1.05650146756755,0,0,0,0.551365343546124,0.66343897524122,1.75380354101505,0,0,0,0,0,0,0,0,0,0.844430541190656,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,2.37571744666111,2.15012491469462,0,0,0,0,0,0,0,0,0,0,7.15391051622157,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0.23056390438806,0,0,0.957003479195758,0.183195186803725,2.66517388009317,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0.867798691675654,0.0979923974143777,0.0870592065804026,0,0.171986032471617,0,0.146178634172371,0.0821154570532092,0,0,0.225980740780532,0,0,0,0,0,0,2.59752492456769,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,1.08089965062721,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0.191915197319445,0,0,0,1.62899880526114,1.72844298240254,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0.149254802886874,0,0,0.189403005275089,0.754703705257725,0.889811221596536,0,0.302461847526478,0.15543720058278,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0.453411851024545,0,0,0.179088841081487,0.308801447160972,0,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0.443511850813194,0,0,0,0,0.118193840883968,0,0,0,0,0,2.15927591218621,10.9882888214022,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,1.0195626881269,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,1.84870251452567,3.02838593486652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0
|short_description=p23@IGFBP3
}}

Revision as of 16:54, 22 January 2014

Short description:p23@IGFBP3
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): No
Description: CAGE_peak_23_at_IGFBP3_5end
Coexpression cluster:C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte
Association with transcript: 0bp_to_AF370418_5end
EntrezGene:IGFBP3
HGNC: 5472
UniProt: Q71RC0
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0.0
2.5
5.0
7.5
10.0
12.5
15.0




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr7:45952626..45952637,-&oldid=3238342"