FFCP PHASE1:Hg19::chr7:87105337..87105344,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=5244 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=45 | |||
|TSSclassifier=weak | |||
|UniProt=P21439 | |||
|association_with_transcript=-282bp_to_ENST00000265723_5end | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_3_at_ABCB4_5end | |||
|id=chr7:87105337..87105344,- | |||
|ontology_enrichment_celltype=CL:0000236!7.41e-35!14;CL:0000945!2.18e-33!24;CL:0000826!2.18e-33!24;CL:0002087!1.11e-14!119;CL:0000542!1.18e-14!53;CL:0000051!1.18e-14!53;CL:0000738!1.09e-13!140;CL:0000838!3.68e-13!52;CL:0000842!1.53e-10!3;CL:0000037!8.60e-10!172;CL:0000566!8.60e-10!172;CL:0002031!2.29e-09!124;CL:0000988!7.22e-09!182;CL:0000224!5.27e-08!4;CL:0002032!3.83e-07!165;CL:0000837!3.83e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000236;8.49e-89;13!CL:0000945;3.25e-47;24!CL:0000542;1.39e-18;53!CL:0000817;1.56e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.55e-82,14;CL:0000945,3.25e-47,24;CL:0000826,3.25e-47,24;CL:0000542,9.25e-24,53;CL:0000051,9.25e-24,53;CL:0000838,1.08e-20,52;CL:0002087,1.34e-09,115;CL:0000738,3.78e-09,136;CL:0002031,1.07e-07,120;CL:0002032,2.39e-07,161;CL:0000837,2.39e-07,161;CL:0000037,6.12e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000051;1.39e-18;53!UBERON:0004872;1.12e-10;7!UBERON:0001045;2.55e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:12603;4.15e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,5.72e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!5.98e-13!15;UBERON:0000179!5.98e-13!15;UBERON:0000463!5.98e-13!15;UBERON:0002193!2.09e-08!112;UBERON:0002390!1.31e-07!102;UBERON:0003061!1.31e-07!102;UBERON:0004177!1.56e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.68e-11;3!UBERON:0000029;2.55e-09;1!UBERON:0001154;2.55e-09;1!UBERON:0001153;2.55e-09;1!UBERON:0009854;2.55e-09;1!UBERON:0002372;4.15e-09;1!UBERON:0001961;4.15e-09;1!UBERON:0001744;4.15e-09;1!UBERON:0001042;4.15e-09;1!UBERON:0001735;4.15e-09;1!UBERON:0004177;3.04e-07;5!UBERON:0005057;3.04e-07;5!UBERON:0002193;9.63e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.51e-11,3;UBERON:0004854,1.51e-11,3;UBERON:0009034,1.51e-11,3;UBERON:0002095,1.51e-11,3;UBERON:0004782,1.51e-11,3;UBERON:0003281,1.51e-11,3;UBERON:0009664,1.51e-11,3;UBERON:0002296,1.51e-11,3;UBERON:0005602,1.51e-11,3;UBERON:0001179,1.51e-11,3;UBERON:0006293,1.51e-11,3;UBERON:0000029,2.35e-09,1;UBERON:0001154,2.77e-09,1;UBERON:0001153,2.77e-09,1;UBERON:0001045,2.77e-09,1;UBERON:0002372,3.00e-09,1;UBERON:0001961,3.00e-09,1;UBERON:0001744,3.00e-09,1;UBERON:0001735,3.00e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.328402357799783,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0.512321413058201,0,0,0.645484683583826,0,0,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,5.27988733383968,8.19207916893197,9.7846017924991,6.82768356106412,5.60554381850417,9.77079147922622,11.2377628373427,11.4486450544244,21.0608798570496,11.1575065980478,11.8504700718821,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.862856803274467,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13929437434833,0.476463550915578,0.411362273086194,1.29694662238543,0,1.58625035258854,0,0,0,1.11481905075431,7.0691914358458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48655523978033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.201550417460179,0,0,0.157566364614447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,0,0,0,2.97699613087171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23658523500376,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,4.0413084731337,1.54698931136585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0.186224142887574,0,0,0,0,0,1.88585748440845,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.40891655513718,0.641136984606466 | |||
|short_description=p3@ABCB4 | |||
}} |
Revision as of 17:44, 22 January 2014
Short description: | p3@ABCB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ABCB4_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | -282bp_to_ENST00000265723_5end |
EntrezGene: | ABCB4 |
HGNC: | 45 |
UniProt: | P21439 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.55e-82 | 14 |
lymphocyte of B lineage | 3.25e-47 | 24 |
pro-B cell | 3.25e-47 | 24 |
lymphocyte | 9.25e-24 | 53 |
common lymphoid progenitor | 9.25e-24 | 53 |
lymphoid lineage restricted progenitor cell | 1.08e-20 | 52 |
nongranular leukocyte | 1.34e-09 | 115 |
leukocyte | 3.78e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 1.07e-07 | 120 |
hematopoietic oligopotent progenitor cell | 2.39e-07 | 161 |
hematopoietic multipotent progenitor cell | 2.39e-07 | 161 |
hematopoietic stem cell | 6.12e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.51e-11 | 3 |
gastrointestinal system mesentery | 1.51e-11 | 3 |
stomach region | 1.51e-11 | 3 |
mesentery | 1.51e-11 | 3 |
gastrointestinal system serosa | 1.51e-11 | 3 |
mesentery of stomach | 1.51e-11 | 3 |
gut mesentery | 1.51e-11 | 3 |
dorsal mesentery | 1.51e-11 | 3 |
dorsal mesogastrium | 1.51e-11 | 3 |
peritoneal cavity | 1.51e-11 | 3 |
spleen primordium | 1.51e-11 | 3 |
lymph node | 2.35e-09 | 1 |
vermiform appendix | 2.77e-09 | 1 |
caecum | 2.77e-09 | 1 |
midgut | 2.77e-09 | 1 |
tonsil | 3.00e-09 | 1 |
mucosa-associated lymphoid tissue | 3.00e-09 | 1 |
lymphoid tissue | 3.00e-09 | 1 |
tonsillar ring | 3.00e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 5.72e-09 | 1 |