FFCP PHASE1:Mm9::chr3:67267720..67267747,-: Difference between revisions
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{{FFCP|EntrezGene=17035|HGNC=|MCL_coexpression_id=2380|UniProt=|association_with_transcript=-16bp_to_ENSMUST00000160202_5end|description=CAGE_peak_2_at_Lxn_5end|id=chr3:67267720..67267747,-|ontology_enrichment_celltype=CL:0000055!2.22e-13!50;CL:0002319!6.72e-11!43;CL:0000221!1.93e-10!44;CL:0000133!1.93e-10!44;CL:0000393!1.50e-08!39;CL:0000211!1.50e-08!39;CL:0000333!1.10e-07!10;CL:0000095!1.10e-07!10;CL:0000243!1.10e-07!10;CL:0000123!1.10e-07!10;CL:0000125!1.10e-07!10;CL:0000030!1.10e-07!10;CL:0000339!1.10e-07!10|ontology_enrichment_celltype_v019_2=CL:0002319,7.67e-11,43;CL:0000221,2.19e-10,44;CL:0000133,2.19e-10,44;CL:0000393,1.70e-08,39;CL:0000211,1.70e-08,39;CL:0000333,1.09e-07,10;CL:0000095,1.09e-07,10;CL:0000243,1.09e-07,10;CL:0000123,1.09e-07,10;CL:0000125,1.09e-07,10;CL:0000030,1.09e-07,10;CL:0000339,1.09e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.91e-20!75;UBERON:0001016!3.91e-20!75;UBERON:0001017!7.33e-19!73;UBERON:0005743!7.33e-19!73;UBERON:0004121!6.45e-13!102;UBERON:0000924!6.45e-13!102;UBERON:0006601!6.45e-13!102;UBERON:0001049!3.89e-12!52;UBERON:0005068!3.89e-12!52;UBERON:0006241!3.89e-12!52;UBERON:0007135!3.89e-12!52;UBERON:0000955!1.41e-10!50;UBERON:0006238!1.41e-10!50;UBERON:0002616!3.01e-10!49;UBERON:0002346!4.00e-08!71;UBERON:0003075!4.00e-08!71;UBERON:0007284!4.00e-08!71;UBERON:0002020!6.94e-08!34;UBERON:0003076!1.61e-07!12;UBERON:0003057!1.61e-07!12;UBERON:0000025!3.43e-07!114;UBERON:0003080!9.86e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.45e-20,75;UBERON:0001017,8.34e-19,73;UBERON:0004121,5.01e-14,95;UBERON:0000924,5.01e-14,95;UBERON:0006601,5.01e-14,95;UBERON:0000073,5.94e-13,54;UBERON:0001049,4.42e-12,52;UBERON:0005068,4.42e-12,52;UBERON:0006241,4.42e-12,52;UBERON:0007135,4.42e-12,52;UBERON:0000955,3.33e-09,47;UBERON:0006238,3.33e-09,47;UBERON:0002346,3.41e-09,64;UBERON:0003075,3.41e-09,64;UBERON:0007284,3.41e-09,64;UBERON:0002616,6.89e-09,46;UBERON:0010314,2.05e-08,92;UBERON:0010371,4.92e-08,73;UBERON:0002020,7.87e-08,34;UBERON:0003076,1.59e-07,12;UBERON:0003057,1.59e-07,12;UBERON:0000025,3.89e-07,114|phase1_expression=5.60520964866779,3.14077866875425,3.18499467572675,1.81478526784098,1.50268718983904,2.35030980676646,1.86890112476421,0.258246646883153,0.985521055061667,0.234064526321993,0,0,0.342401459862411,0,0.333109761815663,0.404950534779652,0,0,0.274228867211478,0.42438965179803,4.42225108785563,2.6808556824239,0,4.63978026100879,5.27641346454491,2.8711598205751,3.01533397311352,4.09395342103189,8.36103045608045,6.5527833737582,5.76499327703792,0,0,0,0.866554859253824,1.32987716286794,2.04169356262369,0.837063261473815,3.1253413780952,0,0.588231488031014,1.36609096991689,0.485510353031154,128.792444789016,120.942678944881,338.093117481817,46.1610893165343,40.552679086763,36.9072786993913,31.4976436500339,78.6723689534537,48.8758718840903,0.335565212115473,1.45072428402269,1.68046899571232,19.551717138732,17.4785398362642,20.1112115988203,16.9945827122062,28.0365219014177,13.9442908771359,37.9505875917428,62.2506357277798,7.19919773825119,8.89979726310277,4.2628806896766,40.745615030503,82.6069356441342,2.7996195323289,3.51015439662396,1.89292465216244,47.989365379839,57.2049521064679,3.79721477566358,3.54628242767475,0.919218786610021,18.7196997698961,20.0469120793745,20.5832754563366,10.0233578674947,11.2529801630964,8.33461392890816,23.7305549151174,29.826418331679,24.90611438762,39.1856018679978,43.4233626437264,39.703081960789,40.3620610465871,45.6452223044985,4.63783181922684,1.72084775396277,1.3599426674155,0,0,0,3.37066608316204,9.88495870952735,7.53379413348319,7.42013106471715,3.52108549441701,0,0,0,6.49473123033642,7.09407623330276,5.05524445014783,2.62622923353838,8.80388804400384,1.1875371125186,7.28638372417771,10.3518262626128,5.76538743140146,7.08396410597326,6.46737889246376,2.26199864393416,6.67426412882809,2.74738778147832,2.65383165584962,7.117741397686,3.09178125844551,3.87900202508178,0,20.4946557908083,7.95897485891129,3.0654846625031,2.87556298814209,3.59941638596045,2.54140454146129,19.9221550408414,17.3850229071078,9.04711335212624,11.6462294528825,12.2743419518559,15.7918913865266,13.9527486238272,6.41587992256993,4.60305791257344,2.52722758433675,1.89397670297827,6.50602214813519,6.43725892413724,6.66229880279792,4.82255417074288,2.38127747029647,3.20284300712124,2.52994656311268,2.06962696591213,9.48499168904506,7.18603104637713,5.98233822157426,11.3981780862339,13.0682207136031,8.70630416305416,16.8741351854514,6.36909653819178,5.61770549850588,3.60287069960601,1.98914449576915,8.28503090142008,10.5536726991493,8.10279276574567,12.0739815148457,13.5767319905709,13.5755059340893,8.37122201101468,6.43856163359086,6.53885917256149,5.26591519723137,8.70087559619205,4.86412857275134,2.92399974850665,4.17145219052996,4.2946054003319,22.5010244963616,9.98174740079059,3.63460661282178,2.90895623329899,7.25180051819795,6.27039014023184,6.18563814346048,8.26902450955704,9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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:17035 | |||
|HGNC= | |||
|MCL_coexpression_id=2380 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-16bp_to_ENSMUST00000160202_5end | |||
|cluster_id=chr3:67267720..67267747,- | |||
|description=CAGE_peak_2_at_Lxn_5end | |||
|id=chr3:67267720..67267747,- | |||
|ontology_enrichment_celltype=CL:0000055!2.22e-13!50;CL:0002319!6.72e-11!43;CL:0000221!1.93e-10!44;CL:0000133!1.93e-10!44;CL:0000393!1.50e-08!39;CL:0000211!1.50e-08!39;CL:0000333!1.10e-07!10;CL:0000095!1.10e-07!10;CL:0000243!1.10e-07!10;CL:0000123!1.10e-07!10;CL:0000125!1.10e-07!10;CL:0000030!1.10e-07!10;CL:0000339!1.10e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.67e-11,43;CL:0000221,2.19e-10,44;CL:0000133,2.19e-10,44;CL:0000393,1.70e-08,39;CL:0000211,1.70e-08,39;CL:0000333,1.09e-07,10;CL:0000095,1.09e-07,10;CL:0000243,1.09e-07,10;CL:0000123,1.09e-07,10;CL:0000125,1.09e-07,10;CL:0000030,1.09e-07,10;CL:0000339,1.09e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.91e-20!75;UBERON:0001016!3.91e-20!75;UBERON:0001017!7.33e-19!73;UBERON:0005743!7.33e-19!73;UBERON:0004121!6.45e-13!102;UBERON:0000924!6.45e-13!102;UBERON:0006601!6.45e-13!102;UBERON:0001049!3.89e-12!52;UBERON:0005068!3.89e-12!52;UBERON:0006241!3.89e-12!52;UBERON:0007135!3.89e-12!52;UBERON:0000955!1.41e-10!50;UBERON:0006238!1.41e-10!50;UBERON:0002616!3.01e-10!49;UBERON:0002346!4.00e-08!71;UBERON:0003075!4.00e-08!71;UBERON:0007284!4.00e-08!71;UBERON:0002020!6.94e-08!34;UBERON:0003076!1.61e-07!12;UBERON:0003057!1.61e-07!12;UBERON:0000025!3.43e-07!114;UBERON:0003080!9.86e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.45e-20,75;UBERON:0001017,8.34e-19,73;UBERON:0004121,5.01e-14,95;UBERON:0000924,5.01e-14,95;UBERON:0006601,5.01e-14,95;UBERON:0000073,5.94e-13,54;UBERON:0001049,4.42e-12,52;UBERON:0005068,4.42e-12,52;UBERON:0006241,4.42e-12,52;UBERON:0007135,4.42e-12,52;UBERON:0000955,3.33e-09,47;UBERON:0006238,3.33e-09,47;UBERON:0002346,3.41e-09,64;UBERON:0003075,3.41e-09,64;UBERON:0007284,3.41e-09,64;UBERON:0002616,6.89e-09,46;UBERON:0010314,2.05e-08,92;UBERON:0010371,4.92e-08,73;UBERON:0002020,7.87e-08,34;UBERON:0003076,1.59e-07,12;UBERON:0003057,1.59e-07,12;UBERON:0000025,3.89e-07,114 | |||
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| |||
|short_description=p2@Lxn | |||
}} |
Revision as of 23:18, 3 August 2015
Short description: | p2@Lxn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lxn_5end |
Coexpression cluster: | MCL_coexpression_mm9:2380 |
Association with transcript: | -16bp_to_ENSMUST00000160202_5end |
EntrezGene: | 17035 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.67e-11 | 43 |
ectodermal cell | 2.19e-10 | 44 |
neurectodermal cell | 2.19e-10 | 44 |
electrically responsive cell | 1.70e-08 | 39 |
electrically active cell | 1.70e-08 | 39 |
migratory neural crest cell | 1.09e-07 | 10 |
neuron associated cell | 1.09e-07 | 10 |
glial cell (sensu Vertebrata) | 1.09e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.09e-07 | 10 |
glial cell | 1.09e-07 | 10 |
glioblast | 1.09e-07 | 10 |
glioblast (sensu Vertebrata) | 1.09e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.45e-20 | 75 |
central nervous system | 8.34e-19 | 73 |
ectoderm-derived structure | 5.01e-14 | 95 |
ectoderm | 5.01e-14 | 95 |
presumptive ectoderm | 5.01e-14 | 95 |
regional part of nervous system | 5.94e-13 | 54 |
neural tube | 4.42e-12 | 52 |
neural rod | 4.42e-12 | 52 |
future spinal cord | 4.42e-12 | 52 |
neural keel | 4.42e-12 | 52 |
brain | 3.33e-09 | 47 |
future brain | 3.33e-09 | 47 |
neurectoderm | 3.41e-09 | 64 |
neural plate | 3.41e-09 | 64 |
presumptive neural plate | 3.41e-09 | 64 |
regional part of brain | 6.89e-09 | 46 |
structure with developmental contribution from neural crest | 2.05e-08 | 92 |
ecto-epithelium | 4.92e-08 | 73 |
gray matter | 7.87e-08 | 34 |
posterior neural tube | 1.59e-07 | 12 |
chordal neural plate | 1.59e-07 | 12 |
tube | 3.89e-07 | 114 |