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FFCP PHASE1:Mm9::chr3:87421463..87421535,+: Difference between revisions

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{{FFCP|EntrezGene=213498|HGNC=|MCL_coexpression_id=1361|UniProt=Q68FM7,E9Q0A3|association_with_transcript=0bp_to_ENSMUST00000039476,ENSMUST00000129113,ENSMUST00000136072,ENSMUST00000142799_5end|description=CAGE_peak_1_at_Arhgef11_5end|id=chr3:87421463..87421535,+|ontology_enrichment_celltype=CL:0000540!3.13e-08!33;CL:0000047!3.13e-08!33;CL:0000031!3.13e-08!33;CL:0000404!3.13e-08!33;CL:0002321!1.33e-07!70;CL:0000220!1.33e-07!70;CL:0000117!2.30e-07!23;CL:0000337!2.30e-07!23;CL:0000393!7.39e-07!39;CL:0000211!7.39e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,3.13e-08,33;CL:0000047,3.13e-08,33;CL:0000031,3.13e-08,33;CL:0000404,3.13e-08,33;CL:0002321,1.33e-07,70;CL:0000117,2.30e-07,23;CL:0000337,2.30e-07,23;CL:0000393,7.39e-07,39;CL:0000211,7.39e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.25e-11!102;UBERON:0000924!1.25e-11!102;UBERON:0006601!1.25e-11!102;UBERON:0001017!2.00e-11!73;UBERON:0005743!2.00e-11!73;UBERON:0000073!3.22e-11!75;UBERON:0001016!3.22e-11!75;UBERON:0001049!5.17e-09!52;UBERON:0005068!5.17e-09!52;UBERON:0006241!5.17e-09!52;UBERON:0007135!5.17e-09!52;UBERON:0000955!1.61e-08!50;UBERON:0006238!1.61e-08!50;UBERON:0002616!3.51e-08!49;UBERON:0002346!3.87e-08!71;UBERON:0003075!3.87e-08!71;UBERON:0007284!3.87e-08!71;UBERON:0000033!4.12e-08!63|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.85e-12,95;UBERON:0000924,1.85e-12,95;UBERON:0006601,1.85e-12,95;UBERON:0001017,2.00e-11,73;UBERON:0001016,3.22e-11,75;UBERON:0000073,6.87e-10,54;UBERON:0010371,1.07e-09,73;UBERON:0002346,4.97e-09,64;UBERON:0003075,4.97e-09,64;UBERON:0007284,4.97e-09,64;UBERON:0001049,5.17e-09,52;UBERON:0005068,5.17e-09,52;UBERON:0006241,5.17e-09,52;UBERON:0007135,5.17e-09,52;UBERON:0000955,3.18e-07,47;UBERON:0006238,3.18e-07,47;UBERON:0000160,6.40e-07,31;UBERON:0002616,6.65e-07,46|phase1_expression=18.7374151112609,64.2114750056424,60.0598995994188,113.726543451368,92.6657100400742,29.3788725845807,24.0621019813391,7.23090611272827,6.89864738543167,6.78787126333781,3.4243593645101,2.6324812468461,13.5248576645653,12.5885379483356,3.66420737997229,3.44207954562704,2.09868563438444,10.4102514568218,8.36398044995006,12.3072999021429,22.9616883407888,1.29078236561151,0.783599367416806,14.8792953197868,15.5998311125676,37.3250776674763,32.7379117080897,23.7018355954478,27.5533958211742,35.2842181663903,16.4080577884925,6.35030673459631,6.1506478758457,0,20.7973166220918,13.1325369833209,18.783580776138,30.1342774130574,14.8453715459522,30.3643771504803,27.6468799374577,29.3709558532132,34.4712350652119,11.2048167998264,12.3679856087808,16.8863011988747,14.8654355426127,18.7501634487184,16.9158360705543,22.3594383935426,14.4186014274123,12.9377307928474,14.2615215149076,21.7608642603403,16.4685961579807,17.2363822144084,23.2092086350393,18.5641953219879,23.8733423814325,19.0436752537932,25.9870875437533,12.876092218627,18.6751907183339,17.5480444869873,10.8775299882367,9.9467216092454,18.8748069626595,12.6792040756113,25.7150238525025,18.9008313664367,16.8259969081106,31.7072592688222,24.0746709637259,20.8234358665422,21.5652309791032,36.7687514644008,25.3266526298594,43.0306329347083,37.1727810480109,20.44237459818,22.2314973953855,19.7947080811569,33.2227768811643,26.449842671489,36.6715794664344,28.2843442054721,30.467539691008,20.6903384866084,12.8734528666413,22.5958964719289,23.4790235848359,15.487629785665,7.47968467078526,19.4293148989614,21.4426217757731,24.1934519032561,11.5164424508037,12.4414135481982,8.57293815189467,10.2468476607999,14.5068722369981,23.0987659345772,45.8649431471962,42.6640021891999,13.2059535016841,8.86759529162845,16.1767822404731,16.4424786795446,13.7237078333001,24.6413950847609,12.4909435271618,14.6143429589828,14.7593918243877,14.0172055713939,21.8714995272411,17.7189893774842,26.6970565153124,17.4965221873093,11.4999371753484,14.235482795372,11.7046004784009,8.727754556434,22.3670113461747,26.6430525280508,33.7209197969663,24.2684202448162,4.07371423320129,2.39961092397363,4.70159840170339,28.0108495687018,17.3850229071078,17.591609295801,27.638066910572,34.7773021969249,29.0903262383384,26.6075671431123,15.4795833052481,14.680022531991,11.8779696463827,20.6233018768745,13.1421647392331,13.5642241615749,16.3856538122868,18.536692593793,23.6767017046621,25.62274405697,26.9860966732019,20.4375662883822,14.2274875335676,18.5323958564463,17.7710635405588,12.7133524807993,19.7413546950174,29.6014341543842,20.3724315043864,17.7140497468459,4.21327912387941,4.11756651383544,4.26245249093389,9.52778553663309,11.7263029990548,10.4435995647389,12.5474709860161,11.8058539048442,10.6444307892291,14.1845706297749,11.8040296615832,18.5656894363799,15.3040660419537,14.9392392311977,18.9701014337302,14.4737987551079,14.2707574939183,17.9836601138898,32.1743621303115,17.1850702673405,36.015647345234,25.6517049663638,13.2238715331845,15.3276203427889,15.206360436007,16.9414160683608,22.237804384487,18.2616601068057,26.5736274464927,19.5991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{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=entrezgene:213498
|HGNC=
|MCL_coexpression_id=1361
|TSSclassifier=NA
|UniProt=uniprot:Q68FM7,uniprot:E9Q0A3
|association_with_transcript=0bp_to_ENSMUST00000039476,ENSMUST00000129113,ENSMUST00000136072,ENSMUST00000142799_5end
|cluster_id=chr3:87421463..87421535,+
|description=CAGE_peak_1_at_Arhgef11_5end
|id=chr3:87421463..87421535,+
|ontology_enrichment_celltype=CL:0000540!3.13e-08!33;CL:0000047!3.13e-08!33;CL:0000031!3.13e-08!33;CL:0000404!3.13e-08!33;CL:0002321!1.33e-07!70;CL:0000220!1.33e-07!70;CL:0000117!2.30e-07!23;CL:0000337!2.30e-07!23;CL:0000393!7.39e-07!39;CL:0000211!7.39e-07!39
|ontology_enrichment_celltype_v019_2=CL:0000540,3.13e-08,33;CL:0000047,3.13e-08,33;CL:0000031,3.13e-08,33;CL:0000404,3.13e-08,33;CL:0002321,1.33e-07,70;CL:0000117,2.30e-07,23;CL:0000337,2.30e-07,23;CL:0000393,7.39e-07,39;CL:0000211,7.39e-07,39
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0004121!1.25e-11!102;UBERON:0000924!1.25e-11!102;UBERON:0006601!1.25e-11!102;UBERON:0001017!2.00e-11!73;UBERON:0005743!2.00e-11!73;UBERON:0000073!3.22e-11!75;UBERON:0001016!3.22e-11!75;UBERON:0001049!5.17e-09!52;UBERON:0005068!5.17e-09!52;UBERON:0006241!5.17e-09!52;UBERON:0007135!5.17e-09!52;UBERON:0000955!1.61e-08!50;UBERON:0006238!1.61e-08!50;UBERON:0002616!3.51e-08!49;UBERON:0002346!3.87e-08!71;UBERON:0003075!3.87e-08!71;UBERON:0007284!3.87e-08!71;UBERON:0000033!4.12e-08!63
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.85e-12,95;UBERON:0000924,1.85e-12,95;UBERON:0006601,1.85e-12,95;UBERON:0001017,2.00e-11,73;UBERON:0001016,3.22e-11,75;UBERON:0000073,6.87e-10,54;UBERON:0010371,1.07e-09,73;UBERON:0002346,4.97e-09,64;UBERON:0003075,4.97e-09,64;UBERON:0007284,4.97e-09,64;UBERON:0001049,5.17e-09,52;UBERON:0005068,5.17e-09,52;UBERON:0006241,5.17e-09,52;UBERON:0007135,5.17e-09,52;UBERON:0000955,3.18e-07,47;UBERON:0006238,3.18e-07,47;UBERON:0000160,6.40e-07,31;UBERON:0002616,6.65e-07,46
|phase1_expression=18.7374151112609,64.2114750056424,60.0598995994188,113.726543451368,92.6657100400742,29.3788725845807,24.0621019813391,7.23090611272827,6.89864738543167,6.78787126333781,3.4243593645101,2.6324812468461,13.5248576645653,12.5885379483356,3.66420737997229,3.44207954562704,2.09868563438444,10.4102514568218,8.36398044995006,12.3072999021429,22.9616883407888,1.29078236561151,0.783599367416806,14.8792953197868,15.5998311125676,37.3250776674763,32.7379117080897,23.7018355954478,27.5533958211742,35.2842181663903,16.4080577884925,6.35030673459631,6.1506478758457,0,20.7973166220918,13.1325369833209,18.783580776138,30.1342774130574,14.8453715459522,30.3643771504803,27.6468799374577,29.3709558532132,34.4712350652119,11.2048167998264,12.3679856087808,16.8863011988747,14.8654355426127,18.7501634487184,16.9158360705543,22.3594383935426,14.4186014274123,12.9377307928474,14.2615215149076,21.7608642603403,16.4685961579807,17.2363822144084,23.2092086350393,18.5641953219879,23.8733423814325,19.0436752537932,25.9870875437533,12.876092218627,18.6751907183339,17.5480444869873,10.8775299882367,9.9467216092454,18.8748069626595,12.6792040756113,25.7150238525025,18.9008313664367,16.8259969081106,31.7072592688222,24.0746709637259,20.8234358665422,21.5652309791032,36.7687514644008,25.3266526298594,43.0306329347083,37.1727810480109,20.44237459818,22.2314973953855,19.7947080811569,33.2227768811643,26.449842671489,36.6715794664344,28.2843442054721,30.467539691008,20.6903384866084,12.8734528666413,22.5958964719289,23.4790235848359,15.487629785665,7.47968467078526,19.4293148989614,21.4426217757731,24.1934519032561,11.5164424508037,12.4414135481982,8.57293815189467,10.2468476607999,14.5068722369981,23.0987659345772,45.8649431471962,42.6640021891999,13.2059535016841,8.86759529162845,16.1767822404731,16.4424786795446,13.7237078333001,24.6413950847609,12.4909435271618,14.6143429589828,14.7593918243877,14.0172055713939,21.8714995272411,17.7189893774842,26.6970565153124,17.4965221873093,11.4999371753484,14.235482795372,11.7046004784009,8.727754556434,22.3670113461747,26.6430525280508,33.7209197969663,24.2684202448162,4.07371423320129,2.39961092397363,4.70159840170339,28.0108495687018,17.3850229071078,17.591609295801,27.638066910572,34.7773021969249,29.0903262383384,26.6075671431123,15.4795833052481,14.680022531991,11.8779696463827,20.6233018768745,13.1421647392331,13.5642241615749,16.3856538122868,18.536692593793,23.6767017046621,25.62274405697,26.9860966732019,20.4375662883822,14.2274875335676,18.5323958564463,17.7710635405588,12.7133524807993,19.7413546950174,29.6014341543842,20.3724315043864,17.7140497468459,4.21327912387941,4.11756651383544,4.26245249093389,9.52778553663309,11.7263029990548,10.4435995647389,12.5474709860161,11.8058539048442,10.6444307892291,14.1845706297749,11.8040296615832,18.5656894363799,15.3040660419537,14.9392392311977,18.9701014337302,14.4737987551079,14.2707574939183,17.9836601138898,32.1743621303115,17.1850702673405,36.015647345234,25.6517049663638,13.2238715331845,15.3276203427889,15.206360436007,16.9414160683608,22.237804384487,18.2616601068057,26.5736274464927,19.5991756121573,24.3795152536261,27.65494961372,31.1942539390592,23.3693046250098,23.342909386467,27.8797782556114,10.0523987505133,13.8240700257772,4.50830942692322,16.4957575554705,18.0375813065892,20.9706101472052,22.6386802904841,23.0271830848179,23.3928104483648,18.7563689161137,14.8226313543574,5.83957870006329,4.91397487783007,2.47348323623339,6.49152388443209,6.51178331331525,10.9489116266011,11.7955416354832,10.0523840600522,10.158772287959,12.9391385874619,15.6299198020771,18.7222603868736,19.1959947239805,18.6573310062789,24.1221760681684,23.0941487708256,10.0430448238357,16.4594626206446,14.0888421193406,15.7242466353296,22.2783322397615,28.0891496245496,33.1727201358258,25.5368933452029,28.568944964692,30.6153155822375,27.0374469280968,27.2842271348115,33.5585815909107,12.0633027151418,8.70249094109935,16.2282210096282,18.4877620024171,29.7018591477415,32.3504254994481,7.54100748732707,14.895784705058,16.7219356290616,17.5697434933487,23.0503035574095,22.4630670075399,22.7254647564042,29.7230357328274,20.2405350837447,21.6269334854371,23.7172666767914,26.3483479465882,25.5492153374884,16.3820355373875,19.0577742443684,21.4461159864296,17.2568679841952,6.5550771761845,13.302236506449,6.60117779145643,10.9261700365886,16.2940628410282,17.8315522286073,18.5402202033528,17.4683715408513,17.3820216864699,12.6502330289999,21.6584640821192,23.4903327970114,15.665315180724,16.0404767890616,22.5053886783172,21.2808280370728,19.6205699362278,21.2268236576736,17.9634319977614,20.4164386015428,28.8091616374795,14.3343458735725,28.0306630000516,21.7976976039472,24.4267345959031,19.9351814485238,23.9645713627789,27.399198643206,34.3036808719443,6.66396435111626,14.4470807574256,11.4820606969221,5.83942216714542,6.69801715833023,7.54967971581525,6.79913719975421,7.13752406850656,6.49539876880792,11.4560474161814,12.1789357528737,16.062237903021,16.2008011232702,17.1452402731864,15.7221045897248,19.1507371866445,21.8205123114887,19.6316956488022,27.4783743378601,15.5334828271731,15.7834022831573,17.1944027950576,13.8985131983962,21.3896307178452,14.7242198764613,17.4024809255502,21.3590174335272,19.9212708811244,22.2301810182507,16.1861360953424,15.2655903316669,12.324433704499,9.52808511863772,9.34669710199928,7.01572444080093,7.51912121803422,8.34461690081313,7.81270421879797,9.89519832069667,9.08698049533329,7.46826705218998,9.07435666231565,10.3305353584138,11.4492091551992,10.9864288050675,19.9522737581386,7.5475224147182,3.76798197759798,11.0803846800292,22.6031825017663,17.8298351678623,23.8097111547445,17.1494703263253,15.5487352250963,22.5900737046827,15.651058041244,17.7597609166213,28.6994814513958,17.8121455140367,23.4172108190807,22.9507650078814,18.463169332193,20.8445508132734,19.1571315348173,9.44464863016008,17.5570944296454,11.9513524027894,15.3157231753025,14.6729213839588,13.604419625301,14.8905307627082,16.0707344646337,16.3668796891826,16.9307131881744,15.9691958930851,21.8806556007848,20.7884146583139,21.3844009032263,18.7239628795299,19.528041342606,18.5414921511769,24.8852894398179,20.6042950401653,18.3998650167997,16.8005933668854,20.5871935144832,20.9823847153642,19.1857269954674,17.9748916593281,20.138276678219,17.7440133686589,20.2563677807139,19.5557923938041,16.8342681497322,19.4561429723646,22.0650040521262,25.7815557196904,23.5503998602668,13.8892759906422,23.4821943261669,18.7145286756327,18.0491685400571,13.390183244819,18.3090877869198,12.7527309591232
|short_description=p1@Arhgef11
}}

Revision as of 03:08, 4 August 2015

Short description:p1@Arhgef11
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Arhgef11_5end
Coexpression cluster:MCL_coexpression_mm9:1361
Association with transcript: 0bp_to_ENSMUST00000039476, ENSMUST00000129113, ENSMUST00000136072, ENSMUST00000142799_5end
EntrezGene:213498
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Arhgef11

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G718.74
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I564.21
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I660.06
CD326+ enterocyte, pool1.CNhs13542.11848-124I3113.73
CD326+ enterocyte, pool2.CNhs13197.11849-124I492.67
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I729.38
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I824.06
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E97.23
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E76.90
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F26.79
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E63.42
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F12.63
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E413.52
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E812.59
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A13.66
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A33.44
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A52.10
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A210.41
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A48.36
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A612.31
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A322.96
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H21.29
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.78
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D114.88
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D215.60
GP2+ M cell, pool1.CNhs13228.11845-124H937.33
GP2+ M cell, pool2.CNhs13231.11846-124I132.74
GP2+ M cell, pool3.CNhs13240.11847-124I223.70
Ileum epithelium, pool1.CNhs13199.10252-104B927.55
Ileum epithelium, pool2.CNhs13232.10253-104C135.28
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C816.41
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I36.35
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G66.15
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F520.80
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F613.13
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F718.78
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G830.13
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H114.85
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H330.36
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G927.65
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H229.37
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H434.47
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D811.20
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D912.37
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B316.89
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B714.87
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C218.75
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B816.92
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C322.36
Mouse Astrocytes, donor2.CNhs12078.11552-120C414.42
Mouse Astrocytes, donor3.CNhs12107.11633-122C412.94
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A214.26
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I921.76
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A116.47
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C117.24
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E123.21
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C518.56
Mouse Granule cells, donor1.CNhs12131.11713-123C323.87
Mouse Granule cells, donor2.CNhs12357.11731-123E319.04
Mouse Granule cells, donor3.CNhs12108.11636-122C725.99
Mouse Meningeal cells, donor1.CNhs12132.11716-123C612.88
Mouse Meningeal cells, donor3.CNhs12109.11639-122D118.68
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C717.55
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E710.88
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D29.95
Mouse Microglia, donor1.CNhs12629.11718-123C818.87
Mouse Microglia, donor2.CNhs12634.11736-123E812.68
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D525.72
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F518.90
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D916.83
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F131.71
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D524.07
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D220.82
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F221.57
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D636.77
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D325.33
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F343.03
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D737.17
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D420.44
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F422.23
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D819.79
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E433.22
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E526.45
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I636.67
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D628.28
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F630.47
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E120.69
Mouse Schwann, donor1.CNhs12507.11728-123D912.87
Mouse Schwann, donor2.CNhs12573.11746-123F922.60
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G323.48
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F715.49
Mouse hepatocyte, donor1.CNhs13078.11714-123C47.48
Mouse hepatocyte, donor3.CNhs12615.11637-122C819.43
Mouse hepatocyte, donor6.CNhs13090.11822-124F421.44
Mouse hepatocyte, donor8.CNhs13091.11824-124F624.19
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A711.52
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I712.44
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E38.57
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I810.25
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G614.51
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H123.10
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I845.86
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B642.66
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G113.21
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G28.87
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G316.18
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B616.44
accessory axillary lymph node, adult.CNhs10475.1063-29H913.72
adrenal gland, adult.CNhs10508.49-24D724.64
adrenal gland, embryo E14.CNhs11038.406-44C512.49
adrenal gland, embryo E16.CNhs11004.1254-43D614.61
adrenal gland, embryo E17.CNhs11043.1263-45I114.76
adrenal gland, embryo E18.CNhs11026.1262-18F514.02
adrenal gland, neonate N00.CNhs11191.1311-23C121.87
adrenal gland, neonate N25.CNhs11223.1377-27I317.72
amnion, adult pregnant day17.5.CNhs10488.583-22A826.70
aorta, adult.CNhs10498.46-23H117.50
bone (os femoris), adult.CNhs10483.56-12G211.50
bone (os femoris), neonate N02.CNhs11227.1985-43F514.24
bone (os femoris), neonate N16.CNhs11225.1525-43A611.70
bone (os femoris), neonate N20.CNhs11195.1350-25C38.73
cecum, adult.CNhs10467.37-13H422.37
cerebellum, adult.CNhs10494.15-8B226.64
cerebellum, neonate N30.CNhs11135.1395-42I233.72
colon, adult.CNhs10468.36-18H724.27
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C74.07
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D12.40
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D44.70
corpora quadrigemina, adult.CNhs10501.16-22A428.01
corpus striatum, adult.CNhs10487.19-21D817.39
corpus striatum, neonate N00.CNhs11226.630-43F117.59
cortex, adult.CNhs10473.12-14D527.64
cortex, neonate N30.CNhs11107.1392-42F234.78
diencephalon, adult.CNhs10482.20-12F229.09
diencephalon, neonate N30.CNhs11201.1388-42B226.61
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B115.48
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A214.68
epididymis, adult.CNhs10490.58-23B211.88
eyeball, adult.CNhs10484.31-12G420.62
eyeball, embryo E12.CNhs11016.345-16C613.14
eyeball, embryo E14.CNhs10521.399-16E213.56
eyeball, embryo E15.CNhs10593.426-16C916.39
eyeball, embryo E17.CNhs11023.1261-18D418.54
eyeball, neonate N00.CNhs11207.633-15C623.68
eyeball, neonate N01.CNhs11140.1532-43E725.62
eyeball, neonate N02.CNhs11205.1551-44G826.99
eyeball, neonate N16.CNhs11188.777-19A220.44
forelimb, embryo E11.CNhs10596.335-25E214.23
forelimb, embryo E12.CNhs10600.359-14H218.53
forelimb, embryo E13.CNhs10589.384-1E217.77
forelimb, embryo E14.CNhs10577.413-26A812.71
forelimb, embryo E15.CNhs11007.437-20E719.74
forelimb, embryo E17.CNhs10598.1517-43C429.60
forelimb, embryo E18.CNhs11008.1520-43B520.37
gonad, embryo E13.CNhs11044.1564-45I617.71
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C84.21
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D24.12
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D54.26
heart, embryo E11.CNhs10586.331-24E99.53
heart, embryo E12.CNhs11015.353-12F511.73
heart, embryo E13.CNhs11013.376-3I910.44
heart, embryo E14.CNhs10597.403-26D412.55
heart, embryo E15.CNhs11017.431-16C811.81
heart, embryo E16.CNhs11021.457-17C610.64
heart, embryo E17.CNhs11025.479-18E514.18
heart, embryo E18.CNhs11030.1283-20G311.80
heart, neonate N00.CNhs11213.639-21E318.57
heart, neonate N03.CNhs11221.1349-25I215.30
heart, neonate N10.CNhs11118.749-24G114.94
heart, neonate N16.CNhs11209.782-15G118.97
heart, neonate N20.CNhs11127.821-26I614.47
heart, neonate N25.CNhs11196.1351-25D314.27
heart, neonate N30.CNhs11202.1390-42D217.98
hippocampus, adult.CNhs10478.13-16E832.17
hippocampus, neonate N00.CNhs11228.627-43G117.19
intestinal mucosa, adult.CNhs10506.860-29I336.02
intestine, adult.CNhs10496.178-9A325.65
intestine, embryo E12.CNhs11019.1251-16I513.22
intestine, embryo E13.CNhs11010.381-16D515.33
intestine, embryo E15.CNhs10602.976-16D815.21
intestine, embryo E16.CNhs10585.463-22H416.94
intestine, embryo E17.CNhs10582.482-18D322.24
intestine, embryo E18.CNhs10526.1289-20F718.26
intestine, neonate N00.CNhs11126.644-26D126.57
intestine, neonate N01.CNhs11192.1322-23E919.60
intestine, neonate N06.CNhs11102.688-20B824.38
intestine, neonate N07.CNhs11095.720-20F227.65
intestine, neonate N10.CNhs11098.755-23A531.19
intestine, neonate N20.CNhs11187.827-18D123.37
intestine, neonate N25.CNhs11121.1352-25E323.34
intestine, neonate N30.CNhs11131.1384-42G127.88
kidney, embryo E14.CNhs10606.411-4I910.05
kidney, embryo E15.CNhs10997.434-16F813.82
kidney, embryo E16.CNhs10584.464-22A54.51
kidney, embryo E17.CNhs11028.483-18I216.50
kidney, embryo E18.CNhs11001.1288-20C718.04
kidney, neonate N00.CNhs11214.646-21G720.97
kidney, neonate N10.CNhs11206.758-6D522.64
kidney, neonate N20.CNhs11113.832-19I123.03
kidney, neonate N25.CNhs11122.1353-25F323.39
kidney, neonate N30.CNhs11203.1385-42H118.76
liver, adult pregnant day01.CNhs10466.508-5B214.82
liver, embryo E12.CNhs10601.355-15F85.84
liver, embryo E13.CNhs10524.378-3H64.91
liver, embryo E14.CNhs10594.409-16E12.47
liver, embryo E15.CNhs10520.433-16D76.49
liver, embryo E16.CNhs10523.462-17F56.51
liver, embryo E17.CNhs10510.481-18A310.95
liver, embryo E18.CNhs10579.499-43G411.80
liver, neonate N00.CNhs11117.641-24F410.05
liver, neonate N03.CNhs11123.1345-25G210.16
liver, neonate N06.CNhs11101.684-20A812.94
liver, neonate N07.CNhs11103.716-20H215.63
liver, neonate N10.CNhs11115.751-24B918.72
liver, neonate N20.CNhs11220.823-25A319.20
liver, neonate N25.CNhs11198.1368-26H118.66
liver, neonate N30.CNhs11106.1382-42D124.12
lung, adult.CNhs10474.28-22B123.09
lung, embryo E12.CNhs10522.354-16G210.04
lung, embryo E14.CNhs10604.404-26F816.46
lung, embryo E15.CNhs11020.432-17C514.09
lung, embryo E16.CNhs10998.458-17B615.72
lung, embryo E17.CNhs10605.480-44A622.28
lung, embryo E18.CNhs10583.1287-20I628.09
lung, neonate N00.CNhs11224.640-42C633.17
lung, neonate N06.CNhs11212.683-20E525.54
lung, neonate N07.CNhs11111.715-19A328.57
lung, neonate N10.CNhs11219.750-23E630.62
lung, neonate N20.CNhs11109.822-18A427.04
lung, neonate N25.CNhs11119.1359-25C727.28
lung, neonate N30.CNhs11133.1394-42H233.56
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A112.06
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A18.70
mammary gland, adult lactating day02.CNhs10480.595-22B616.23
mammary gland, adult pregnant day19.CNhs10476.588-5H218.49
medulla oblongata, adult.CNhs10477.17-12C229.70
medulla oblongata, neonate N30.CNhs11200.1396-42A332.35
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C77.54
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C214.90
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E116.72
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E217.57
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E323.05
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D722.46
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D822.73
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D929.72
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D420.24
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D521.63
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D623.72
olfactory brain, adult.CNhs10489.18-22I926.35
ovary, adult.CNhs10507.91-2I725.55
ovary, embryo E18.CNhs11040.505-44H716.38
ovary, neonate N00.CNhs11217.1299-22I419.06
oviduct, adult pregnant day01.CNhs10500.988-6G621.45
pancreas, adult.CNhs10486.34-16E417.26
pancreas, embryo E14.CNhs11012.405-44F46.56
pancreas, embryo E15.CNhs11042.1556-45F213.30
pancreas, embryo E16.CNhs11003.460-26E56.60
pancreas, embryo E17.CNhs10599.1558-45G310.93
pancreas, embryo E18.CNhs10580.1535-43I716.29
pancreas, neonate N00.CNhs11105.645-26G917.83
pancreas, neonate N01.CNhs11138.1531-43D718.54
pancreas, neonate N02.CNhs11139.1539-43D817.47
pancreas, neonate N16.CNhs11136.787-43B617.38
pancreas, neonate N25.CNhs11094.1555-45E212.65
pancreas, neonate N30.CNhs11182.1548-44H521.66
pituitary gland, adult.CNhs10493.21-1G823.49
pituitary gland, embryo E12.CNhs11018.346-16E615.67
pituitary gland, embryo E13.CNhs11009.370-44C716.04
pituitary gland, embryo E14.CNhs11037.398-44A522.51
pituitary gland, embryo E15.CNhs10592.427-16B921.28
pituitary gland, embryo E16.CNhs11036.449-43F619.62
pituitary gland, embryo E17.CNhs11039.1265-44F521.23
pituitary gland, neonate N00.CNhs11190.1308-22E917.96
placenta, adult pregnant day10.CNhs10472.539-13I720.42
placenta, adult pregnant day17.CNhs10464.577-18G328.81
prostate, adult.CNhs10470.859-1F814.33
skin, adult.CNhs10492.30-1C328.03
skin, neonate N00.CNhs11124.650-25G421.80
skin, neonate N03.CNhs11215.662-22H324.43
skin, neonate N06.CNhs11097.693-20I519.94
skin, neonate N10.CNhs11108.762-6C423.96
small intestine, neonate N16.CNhs11114.790-21I127.40
spinal cord, adult.CNhs10505.24-13C934.30
spleen, adult.CNhs10465.25-2G26.66
spleen, embryo E16.CNhs11035.461-43C114.45
spleen, embryo E18.CNhs11011.1271-21F211.48
spleen, neonate N10.CNhs11116.752-24D15.84
spleen, neonate N20.CNhs11112.824-19H16.70
spleen, neonate N25.CNhs11099.1354-25G37.55
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C66.80
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C97.14
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D36.50
stomach, adult.CNhs10503.33-1H611.46
stomach, embryo E12.CNhs10588.356-43E312.18
stomach, embryo E15.CNhs10603.1252-16G816.06
stomach, embryo E16.CNhs11022.459-17D416.20
stomach, embryo E17.CNhs11006.1035-18D517.15
stomach, embryo E18.CNhs10999.1286-20C615.72
stomach, neonate N03.CNhs11193.1340-24B819.15
stomach, neonate N07.CNhs11210.718-18A921.82
stomach, neonate N25.CNhs11104.1355-25E419.63
stomach, neonate N30.CNhs11134.1386-42I127.48
submandibular gland, adult.CNhs10469.59-29C115.53
testis, adult.CNhs10504.57-7G515.78
testis, embryo E13.CNhs11031.389-23F517.19
testis, embryo E15.CNhs11034.443-27C513.90
testis, embryo E16.CNhs11033.470-26G521.39
testis, embryo E17.CNhs11029.486-18I514.72
testis, embryo E18.CNhs11027.503-18G517.40
testis, neonate N00.CNhs11189.1300-22B721.36
testis, neonate N07.CNhs11222.726-26I419.92
testis, neonate N10.CNhs11204.763-44D922.23
testis, neonate N20.CNhs11110.839-18H316.19
testis, neonate N30.CNhs11130.1391-42E215.27
thymus, adult.CNhs10471.38-12B512.32
thymus, embryo E14.CNhs11041.402-44I49.53
thymus, embryo E15.CNhs11005.430-45I29.35
thymus, embryo E16.CNhs11002.456-26C57.02
thymus, embryo E17.CNhs10581.478-18C17.52
thymus, embryo E18.CNhs10595.1273-19G48.34
thymus, neonate N02.CNhs11181.1541-43F87.81
thymus, neonate N03.CNhs11137.2104-43C79.90
thymus, neonate N06.CNhs11197.681-26C49.09
thymus, neonate N07.CNhs11211.713-19D37.47
thymus, neonate N10.CNhs11194.748-24E49.07
thymus, neonate N20.CNhs11186.820-7A210.33
thymus, neonate N25.CNhs11125.1362-25G711.45
thymus, neonate N30.CNhs11132.1393-42G210.99
tongue, adult.CNhs10499.32-1B419.95
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H37.55
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F73.77
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G511.08
urinary bladder, adult.CNhs10481.879-12E422.60
uterus, adult pregnant day19.CNhs10497.590-15F517.83
uterus, adult.CNhs10509.92-27E523.81
vagina, adult.CNhs10502.89-27D517.15
vesicular gland, adult.CNhs10491.51-27F815.55
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A122.59
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A215.65
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A317.76
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D728.70
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A417.81
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A523.42
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A622.95
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A718.46
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A820.84
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A919.16
whole body, embryo E11.CNhs11014.324-5I89.44
whole body, embryo E12.CNhs10587.857-27C917.56
whole body, embryo E13.CNhs10512.372-23H211.95
whole body, embryo E14.5.CNhs10578.420-27D215.32
whole body, embryo E14.CNhs10519.395-14B114.67
whole body, embryo E16.CNhs10514.453-14F213.60
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G514.89
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G516.07
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G516.37
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G516.93
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G515.97
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G521.88
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G520.79
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G521.38
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G518.72
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G519.53
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G518.54
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G524.89
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G520.60
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G518.40
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G516.80
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G520.59
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G520.98
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G519.19
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G517.97
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G520.14
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G517.74
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G520.26
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G519.56
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G516.83
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G519.46
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G522.07
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G525.78
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G523.55
whole body, embryo E17.5.CNhs10513.490-9F913.89
whole body, embryo E17.CNhs10517.475-3I523.48
whole body, embryo E18.CNhs10516.493-3B318.71
whole body, neonate N00.CNhs10525.657-19C218.05
whole body, neonate N01.CNhs10576.659-23C613.39
whole body, neonate N06.CNhs10515.692-21D118.31
whole body, neonate N10.CNhs10518.761-6B412.75





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
neuron3.13e-0833
neuronal stem cell3.13e-0833
neuroblast3.13e-0833
electrically signaling cell3.13e-0833
embryonic cell1.33e-0770
CNS neuron (sensu Vertebrata)2.30e-0723
neuroblast (sensu Vertebrata)2.30e-0723
electrically responsive cell7.39e-0739
electrically active cell7.39e-0739

Uber anatomy
Ontology termp-valuen
ectoderm-derived structure1.85e-1295
ectoderm1.85e-1295
presumptive ectoderm1.85e-1295
central nervous system2.00e-1173
nervous system3.22e-1175
regional part of nervous system6.87e-1054
ecto-epithelium1.07e-0973
neurectoderm4.97e-0964
neural plate4.97e-0964
presumptive neural plate4.97e-0964
neural tube5.17e-0952
neural rod5.17e-0952
future spinal cord5.17e-0952
neural keel5.17e-0952
brain3.18e-0747
future brain3.18e-0747
intestine6.40e-0731
regional part of brain6.65e-0746
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