User:Serkan/test0: Difference between revisions
From FANTOM5_SSTAR
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{{#vardefine:tf_peaknumbers|{{#ask:[[Category:FFCP]][[EntrezGene::165]] | |||
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{{#vardefine:tf_details|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]] | {{#vardefine:tf_details|{{#ask:[[Category:EntrezGene]][[tax_id::9606]][[tf?::true]] | ||
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|? | {{#arraydefine:numberofpeaks|{{#arraymap:{{#var:tf_details}}|,|x| | ||
{{#arraysize:{{#arraydefine:e| | |||
{{#ask:[[Category:FFCP]][[EntrezGene::{{{{#explode:x|<PROP>|2}}}}]] | |||
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Size of array number of peaks: {{#arraysize:numberofpeaks}} | |||
Revision as of 12:01, 18 September 2013
GRAPH
| Name: | {{{name}}} | ||
|---|---|---|---|
| Namespace: | {{{namespace}}} | ||
| Definition: | {{{def}}} | ||
| Xrefs: |
| ||
| Synonyms: | {{{synonym}}} | ||
| Comments: | {{{comment}}} | ||
| Alt_id: | {{{alt_id}}} | ||
| Subset: | {{{subset}}} | ||
| Created by: | {{{created_by}}} | ||
| Creation date: | {{{obo_creation_date}}} | ||
| Has quality: | {{{has_quality}}} |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
NA
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.
Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
| Name | Novel motifs human sample pval | |
|---|---|---|
| 1 | motif1_TCGNAG | |
| 10 | motif10_SCGGAGASN | |
| 100 | motif100_GCYTNCTC | |
| 101 | motif101_NAGCAASA | |
| 102 | motif102_GCAAMGT | |
| 103 | motif103_CGGCTAWWT | |
| 104 | motif104_GTWSGMT | |
| 105 | motif105_KTNGNAGWMG | |
| 106 | motif106_KCGCANTC | |
| 107 | motif107_CGTCTGCGTA | |
| ... further results | ||
Size of array number of peaks: 3
