CL:0000062: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=osteoblast | |name=osteoblast | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:28, 12 September 2014
| Name: | osteoblast | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000055(non-terminally differentiated cell),CL:0002320(connective tissue cell) |
|---|---|
| develops_from: | CL:0007010(preosteoblast) |
Children
| derives from: | FF:0000127 (human osteoblast-Sciencell sample),FF:0000128 (human osteoblast-Cell applications sample) |
|---|---|
| develops from: | CL:0000137 (osteocyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11276-116H7 (Osteoblast - differentiated, donor1)
- 11277-116H8 (Osteoblast, donor1)
- 11353-117H3 (Osteoblast - differentiated, donor2)
... further results Mouse (Mus musculus)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11276-116H7 (Osteoblast - differentiated, donor1)
- 11277-116H8 (Osteoblast, donor1)
- 11353-117H3 (Osteoblast - differentiated, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000062 (osteoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.65e-72 | FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366d | p5@SP7 |
| 6.65e-72 | FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366d | p5@SP7 |
| 6.65e-72 | FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366d | p@chr8:38470503..38470508, + |
| 6.65e-72 | FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366d | p@chr8:38470503..38470508, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45c | p@chr12:91395963..91395968, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480065..124480072, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45c | p@chr1:77864109..77864116, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480073..124480086, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45c | p@chr2:37593656..37593667, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45c | p@chr4:88731810..88731821, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733547..36733556, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45c | p@chr9:72436290..72436302, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45c | p@chr4:88731810..88731821, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480073..124480086, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392583..62392613, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45c | p@chr2:37593656..37593667, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45c | p1@PANX3 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733547..36733556, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45c | p@chr9:72436290..72436302, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392583..62392613, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45c | p47@RUNX2 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45c | p@chr1:199050926..199050944, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45c | p4@SP7 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45c | p1@PANX3 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392630..62392651, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45c | p34@RUNX2 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45c | p47@RUNX2 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45c | p@chr9:116398779..116398800, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45c | p@chr6:155427848..155427862, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45c | p2@PANX3 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45c | p@chr1:199050926..199050944, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45c | p4@SP7 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45c | p34@RUNX2 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392630..62392651, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45c | p@chr9:116398779..116398800, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45c | p@chr6:155427848..155427862, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733583..36733590, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124479851..124479862, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45c | p2@PANX3 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45c | p52@RUNX2 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45c | p@chr11:124482705..124482719, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733583..36733590, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124479851..124479862, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45c | p52@RUNX2 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45c | p@chr12:91395963..91395968, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480065..124480072, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45c | p@chr11:124482705..124482719, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45c | p@chr1:77864109..77864116, + |
| 1.03e-43 | FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473 | p3@DLX5 |
| 1.03e-43 | FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473 | p3@DLX5 |
| 4.07e-41 | FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr6:36733594..36733607, - |
| 4.07e-41 | FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr12:53721918..53721923, - |
| 4.07e-41 | FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr12:53721918..53721923, - |
| 4.07e-41 | FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr16:53707116..53707125, - |
| 4.07e-41 | FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr16:53707116..53707125, - |
| 4.07e-41 | FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8 | p16@AIG1 |
| 4.07e-41 | FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8 | p16@AIG1 |
| 4.07e-41 | FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr6:36733594..36733607, - |
| 4.67e-41 | FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr17:1932231..1932269, + |
| 4.67e-41 | FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr17:1932231..1932269, + |
| 4.67e-41 | FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr4:88732513..88732528, + |
| 4.67e-41 | FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr4:88732513..88732528, + |
| 5.35e-41 | FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16b | p@chr2:53859899..53859908, - |
| 5.35e-41 | FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16b | p@chr2:53859899..53859908, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chrX:57934585..57934628,-#_579d13471e77cd4806a73e1c84d61bdc | p@chrX:57934585..57934628, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr19:28163893..28163904,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28163893..28163904, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr13:42264610..42264621,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr13:42264610..42264621, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr6:160023967..160023971,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr6:160023967..160023971, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr1:112316957..112316974,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr1:112316957..112316974, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr11:124489771..124489792,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr11:124489771..124489792, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr17:79968480..79968490,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr17:79968480..79968490, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr8:97570368..97570378,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr8:97570368..97570378, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr11:81619863..81619881,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr11:81619863..81619881, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr19:45821290..45821301,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:45821290..45821301, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr1:199050050..199050059,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr1:199050050..199050059, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr17:79965942..79965947,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr17:79965942..79965947, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr11:46326686..46326700,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr11:46326686..46326700, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:28237057..28237073,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28237057..28237073, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr6:81430111..81430117,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr6:81430111..81430117, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr20:17519265..17519274,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr20:17519265..17519274, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr20:4444563..4444585,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr20:4444563..4444585, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr17:79968480..79968490,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr17:79968480..79968490, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:28164112..28164118,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28164112..28164118, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr16:53706815..53706819,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr16:53706815..53706819, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr4:16020432..16020477,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr4:16020432..16020477, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr19:28198179..28198195,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28198179..28198195, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr6:161454830..161454839,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr6:161454830..161454839, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr20:4444563..4444585,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr20:4444563..4444585, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr9:29940198..29940204,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr9:29940198..29940204, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chrX:58052946..58052954,+#_579d13471e77cd4806a73e1c84d61bdc | p@chrX:58052946..58052954, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr17:79965942..79965947,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr17:79965942..79965947, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr1:21894015..21894027,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr1:21894015..21894027, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr13:42264610..42264621,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr13:42264610..42264621, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:45821324..45821328,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:45821324..45821328, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr4:88654323..88654347,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr4:88654323..88654347, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr1:199050050..199050059,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr1:199050050..199050059, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr6:81435467..81435479,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr6:81435467..81435479, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:28269266..28269269,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28269266..28269269, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr15:30360639..30360648,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr15:30360639..30360648, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr8:134020867..134020882,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr8:134020867..134020882, - |
