CL:0000451: Difference between revisions
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|located_in= | |located_in= | ||
|name=dendritic cell | |name=dendritic cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:33, 12 September 2014
| Name: | dendritic cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149] | ||
| Xrefs: |
| ||
| Synonyms: |
"interdigitating cell" RELATED [] "veiled cell" RELATED [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000738(leukocyte) |
|---|---|
| disjoint_from: | CL:0000542(lymphocyte) |
Children
| is a: | CL:0000784 (plasmacytoid dendritic cell),CL:0000990 (conventional dendritic cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
- 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
- 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
- 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
- 11901-125F2 (migratory langerhans cells, donor1)
- 11902-125F3 (migratory langerhans cells, donor2)
... further results Mouse (Mus musculus)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
- 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
- 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
- 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
- 11901-125F2 (migratory langerhans cells, donor1)
- 11902-125F3 (migratory langerhans cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000451 (dendritic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.02e-142 | FFCP PHASE1:Hg19::chr15:101535004..101535045,+#_f4f460869cff33a633fadb55c7eb825f | p@chr15:101535004..101535045, + |
| 3.02e-142 | FFCP PHASE2:Hg19::chr15:101535004..101535045,+#_f4f460869cff33a633fadb55c7eb825f | p@chr15:101535004..101535045, + |
| 2.01e-127 | FFCP PHASE2:Hg19::chr6:341221..341236,-#_721bd7fb604e32170b22ad4c210410b2 | p@chr6:341221..341236, - |
| 2.01e-127 | FFCP PHASE1:Hg19::chr6:341221..341236,-#_721bd7fb604e32170b22ad4c210410b2 | p@chr6:341221..341236, - |
| 1.31e-124 | FFCP PHASE1:Hg19::chr15:101534994..101535003,+#_6c88667ba4f66defc0c656291de3b905 | p@chr15:101534994..101535003, + |
| 1.31e-124 | FFCP PHASE1:Hg19::chr17:1674976..1674981,+#_6c88667ba4f66defc0c656291de3b905 | p@chr17:1674976..1674981, + |
| 1.31e-124 | FFCP PHASE2:Hg19::chr16:57398251..57398254,+#_6c88667ba4f66defc0c656291de3b905 | p@chr16:57398251..57398254, + |
| 1.31e-124 | FFCP PHASE2:Hg19::chr15:101534994..101535003,+#_6c88667ba4f66defc0c656291de3b905 | p@chr15:101534994..101535003, + |
| 1.31e-124 | FFCP PHASE2:Hg19::chr17:1674976..1674981,+#_6c88667ba4f66defc0c656291de3b905 | p@chr17:1674976..1674981, + |
| 1.31e-124 | FFCP PHASE1:Hg19::chr16:57398251..57398254,+#_6c88667ba4f66defc0c656291de3b905 | p@chr16:57398251..57398254, + |
| 3.99e-114 | FFCP PHASE2:Hg19::chr13:75884283..75884317,-#_25f14e62665ff337b4815dc746a10587 | p@chr13:75884283..75884317, - |
| 3.99e-114 | FFCP PHASE1:Hg19::chr13:75884283..75884317,-#_25f14e62665ff337b4815dc746a10587 | p@chr13:75884283..75884317, - |
| 2.67e-109 | FFCP PHASE2:Hg19::chr15:101529373..101529387,+#_a56f1ed79591d3fbff65e955df9f46f5 | p@chr15:101529373..101529387, + |
| 2.67e-109 | FFCP PHASE1:Hg19::chr16:10960104..10960115,+#_a56f1ed79591d3fbff65e955df9f46f5 | p4@AB463580 |
| 2.67e-109 | FFCP PHASE1:Hg19::chr15:101529373..101529387,+#_a56f1ed79591d3fbff65e955df9f46f5 | p@chr15:101529373..101529387, + |
| 2.67e-109 | FFCP PHASE2:Hg19::chr16:10960104..10960115,+#_a56f1ed79591d3fbff65e955df9f46f5 | p4@AB463580 |
| 5.22e-107 | FFCP PHASE1:Hg19::chr3:119198717..119198735,+#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr3:119198717..119198735, + |
| 5.22e-107 | FFCP PHASE2:Hg19::chr2:61080954..61080964,+#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr2:61080954..61080964, + |
| 5.22e-107 | FFCP PHASE1:Hg19::chr18:59991691..59991708,+#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr18:59991691..59991708, + |
| 5.22e-107 | FFCP PHASE1:Hg19::chr2:61080954..61080964,+#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr2:61080954..61080964, + |
| 5.22e-107 | FFCP PHASE2:Hg19::chr18:59991691..59991708,+#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr18:59991691..59991708, + |
| 5.22e-107 | FFCP PHASE1:Hg19::chr14:68233218..68233229,-#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr14:68233218..68233229, - |
| 5.22e-107 | FFCP PHASE2:Hg19::chr14:68233218..68233229,-#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr14:68233218..68233229, - |
| 5.22e-107 | FFCP PHASE2:Hg19::chr3:119198717..119198735,+#_7f6161daa184ff20fdd0c8a918f5dc1f | p@chr3:119198717..119198735, + |
| 4.24e-104 | FFCP PHASE1:Hg19::chr16:10960091..10960099,+#_bfcb99f8d5e721ec5bb535e7cfc6ab79 | p3@AB463580 |
| 4.24e-104 | FFCP PHASE2:Hg19::chr16:10960091..10960099,+#_bfcb99f8d5e721ec5bb535e7cfc6ab79 | p3@AB463580 |
| 2.9e-97 | FFCP PHASE1:Hg19::chr16:57398441..57398460,+#_ab0b563d097bcb9a07b0ba130b2ad4d4 | p@chr16:57398441..57398460, + |
| 2.9e-97 | FFCP PHASE2:Hg19::chr12:112513512..112513567,-#_ab0b563d097bcb9a07b0ba130b2ad4d4 | p@chr12:112513512..112513567, - |
| 2.9e-97 | FFCP PHASE2:Hg19::chr16:57398441..57398460,+#_ab0b563d097bcb9a07b0ba130b2ad4d4 | p@chr16:57398441..57398460, + |
| 2.9e-97 | FFCP PHASE1:Hg19::chr12:112513512..112513567,-#_ab0b563d097bcb9a07b0ba130b2ad4d4 | p@chr12:112513512..112513567, - |
| 1.57e-95 | FFCP PHASE2:Hg19::chr7:150066722..150066738,+#_cd4840276288ab740f242b6d9c0aa675 | p10@REPIN1 |
| 1.57e-95 | FFCP PHASE1:Hg19::chr7:150066722..150066738,+#_cd4840276288ab740f242b6d9c0aa675 | p10@REPIN1 |
| 2.01e-95 | FFCP PHASE1:Hg19::chr13:75884320..75884362,-#_cec99754e1cae439feb45bb161292a64 | p@chr13:75884320..75884362, - |
| 2.01e-95 | FFCP PHASE2:Hg19::chr13:75884320..75884362,-#_cec99754e1cae439feb45bb161292a64 | p@chr13:75884320..75884362, - |
| 5.68e-92 | FFCP PHASE2:Hg19::chr11:117805926..117805937,+#_06e3273ecc959ed3c8190c40f9403f4e | p@chr11:117805926..117805937, + |
| 5.68e-92 | FFCP PHASE1:Hg19::chr11:117805926..117805937,+#_06e3273ecc959ed3c8190c40f9403f4e | p@chr11:117805926..117805937, + |
| 6.65e-92 | FFCP PHASE2:Hg19::chr10:61810336..61810349,+#_17fa55682aed5b189c7c04768ba8f726 | p@chr10:61810336..61810349, + |
| 6.65e-92 | FFCP PHASE2:Hg19::chr16:57398263..57398266,+#_17fa55682aed5b189c7c04768ba8f726 | p@chr16:57398263..57398266, + |
| 6.65e-92 | FFCP PHASE1:Hg19::chr16:57398263..57398266,+#_17fa55682aed5b189c7c04768ba8f726 | p@chr16:57398263..57398266, + |
| 6.65e-92 | FFCP PHASE1:Hg19::chr10:61810336..61810349,+#_17fa55682aed5b189c7c04768ba8f726 | p@chr10:61810336..61810349, + |
| 7.78e-92 | FFCP PHASE2:Hg19::chr16:57398271..57398274,+#_e301a2cdf81aac2db0478e63e9ede744 | p@chr16:57398271..57398274, + |
| 7.78e-92 | FFCP PHASE1:Hg19::chr16:57398271..57398274,+#_e301a2cdf81aac2db0478e63e9ede744 | p@chr16:57398271..57398274, + |
| 1.93e-89 | FFCP PHASE2:Hg19::chr8:120974832..120974840,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr8:120974832..120974840, + |
| 1.93e-89 | FFCP PHASE1:Hg19::chr16:10959880..10959887,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p6@AB463580 |
| 1.93e-89 | FFCP PHASE2:Hg19::chr16:10959868..10959879,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p2@AB463580 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr16:10885979..10885991,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr16:10885979..10885991, + |
| 1.93e-89 | FFCP PHASE2:Hg19::chr6:32726761..32726781,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr6:32726761..32726781, - |
| 1.93e-89 | FFCP PHASE2:Hg19::chr16:10885979..10885991,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr16:10885979..10885991, + |
| 1.93e-89 | FFCP PHASE2:Hg19::chr16:10959880..10959887,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p6@AB463580 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr8:120974832..120974840,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr8:120974832..120974840, + |
| 1.93e-89 | FFCP PHASE2:Hg19::chr7:4773446..4773457,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr7:4773446..4773457, - |
| 1.93e-89 | FFCP PHASE2:Hg19::chr3:52813932..52813943,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p11@ITIH1 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr6:32726761..32726781,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr6:32726761..32726781, - |
| 1.93e-89 | FFCP PHASE2:Hg19::chr6:32729529..32729536,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p3@M95729 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr19:45487650..45487661,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr19:45487650..45487661, + |
| 1.93e-89 | FFCP PHASE1:Hg19::chr16:10959804..10959811,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p5@AB463580 |
| 1.93e-89 | FFCP PHASE2:Hg19::chr3:119188705..119188718,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr3:119188705..119188718, + |
| 1.93e-89 | FFCP PHASE1:Hg19::chr7:4773446..4773457,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr7:4773446..4773457, - |
| 1.93e-89 | FFCP PHASE2:Hg19::chr19:45487650..45487661,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr19:45487650..45487661, + |
| 1.93e-89 | FFCP PHASE2:Hg19::chr1:201376546..201376550,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr1:201376546..201376550, + |
| 1.93e-89 | FFCP PHASE1:Hg19::chr3:52813932..52813943,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p11@ITIH1 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr13:75884392..75884395,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr13:75884392..75884395, - |
| 1.93e-89 | FFCP PHASE1:Hg19::chr16:10959868..10959879,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p2@AB463580 |
| 1.93e-89 | FFCP PHASE2:Hg19::chr16:10959804..10959811,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p5@AB463580 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr6:32729529..32729536,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p3@M95729 |
| 1.93e-89 | FFCP PHASE1:Hg19::chr3:119188705..119188718,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr3:119188705..119188718, + |
| 1.93e-89 | FFCP PHASE2:Hg19::chr13:75884392..75884395,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr13:75884392..75884395, - |
| 1.93e-89 | FFCP PHASE1:Hg19::chr1:201376546..201376550,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87a | p@chr1:201376546..201376550, + |
| 2.24e-88 | FFCP PHASE2:Hg19::chr16:57397882..57397931,-#_e94d712097b48c7c83056b6b6c2f3fa2 | p1@CU693343 |
| 2.24e-88 | FFCP PHASE1:Hg19::chr16:57397882..57397931,-#_e94d712097b48c7c83056b6b6c2f3fa2 | p1@CU693343 |
| 2.51e-88 | FFCP PHASE1:Hg19::chr16:57397593..57397602,+#_5d429a179c40b07fbe495a7e9962e31c | p@chr16:57397593..57397602, + |
| 2.51e-88 | FFCP PHASE2:Hg19::chr16:57397593..57397602,+#_5d429a179c40b07fbe495a7e9962e31c | p@chr16:57397593..57397602, + |
| 3.53e-88 | FFCP PHASE2:Hg19::chr16:57399022..57399038,+#_8c5b82dae79cb2e57c0993a1085a6d42 | p@chr16:57399022..57399038, + |
| 3.53e-88 | FFCP PHASE1:Hg19::chr16:57399022..57399038,+#_8c5b82dae79cb2e57c0993a1085a6d42 | p@chr16:57399022..57399038, + |
| 7.43e-88 | FFCP PHASE1:Hg19::chr16:57394436..57394449,+#_e83d7d168155ed0c99e18590f83c99cb | p@chr16:57394436..57394449, + |
| 7.43e-88 | FFCP PHASE2:Hg19::chr16:57394436..57394449,+#_e83d7d168155ed0c99e18590f83c99cb | p@chr16:57394436..57394449, + |
| 9.6e-88 | FFCP PHASE2:Hg19::chr16:57399043..57399070,+#_400a7c7783d49389760e065940938259 | p@chr16:57399043..57399070, + |
| 9.6e-88 | FFCP PHASE1:Hg19::chr16:57399043..57399070,+#_400a7c7783d49389760e065940938259 | p@chr16:57399043..57399070, + |
| 1.09e-87 | FFCP PHASE2:Hg19::chr16:57397927..57397934,+#_77c403bad37ba1adf026a942f99cb6f5 | p@chr16:57397927..57397934, + |
| 1.09e-87 | FFCP PHASE1:Hg19::chr16:57397927..57397934,+#_77c403bad37ba1adf026a942f99cb6f5 | p@chr16:57397927..57397934, + |
| 2.47e-82 | FFCP PHASE2:Hg19::chr16:57398987..57399006,+#_c8c945a7d1034e9739341c6fe180ae18 | p@chr16:57398987..57399006, + |
| 2.47e-82 | FFCP PHASE1:Hg19::chr16:57397735..57397758,-#_c8c945a7d1034e9739341c6fe180ae18 | p3@CU693343 |
| 2.47e-82 | FFCP PHASE1:Hg19::chr16:57398987..57399006,+#_c8c945a7d1034e9739341c6fe180ae18 | p@chr16:57398987..57399006, + |
| 2.47e-82 | FFCP PHASE2:Hg19::chr16:57397735..57397758,-#_c8c945a7d1034e9739341c6fe180ae18 | p3@CU693343 |
| 1.43e-80 | FFCP PHASE1:Hg19::chr10:61810305..61810318,+#_06594fbaca0bfda7295980d9760eb3d4 | p@chr10:61810305..61810318, + |
| 1.43e-80 | FFCP PHASE2:Hg19::chr10:61810305..61810318,+#_06594fbaca0bfda7295980d9760eb3d4 | p@chr10:61810305..61810318, + |
| 4.69e-80 | FFCP PHASE1:Hg19::chr6:341268..341280,-#_72dc91c74d6a051c8a2c483e8ca0044e | p@chr6:341268..341280, - |
| 4.69e-80 | FFCP PHASE2:Hg19::chr6:341268..341280,-#_72dc91c74d6a051c8a2c483e8ca0044e | p@chr6:341268..341280, - |
| 2.14e-79 | FFCP PHASE1:Hg19::chr12:50099795..50099808,-#_e6d518c9940f0139657f55bb5c8a119b | p@chr12:50099795..50099808, - |
| 2.14e-79 | FFCP PHASE2:Hg19::chr12:50099795..50099808,-#_e6d518c9940f0139657f55bb5c8a119b | p@chr12:50099795..50099808, - |
| 1.07e-77 | FFCP PHASE2:Hg19::chr6:337994..338015,+#_f1f6979ceef4005837fb45890e378951 | p@chr6:337994..338015, + |
| 1.07e-77 | FFCP PHASE1:Hg19::chr6:337994..338015,+#_f1f6979ceef4005837fb45890e378951 | p@chr6:337994..338015, + |
| 5.2e-77 | FFCP PHASE2:Hg19::chr17:1674956..1674967,+#_68dbb7f73d05d7f5244579561ac10a2c | p@chr17:1674956..1674967, + |
| 5.2e-77 | FFCP PHASE1:Hg19::chr17:1674956..1674967,+#_68dbb7f73d05d7f5244579561ac10a2c | p@chr17:1674956..1674967, + |
| 7.7e-77 | FFCP PHASE2:Hg19::chr16:57397561..57397572,+#_c5591d524f3ee23be59b239e41342b75 | p@chr16:57397561..57397572, + |
| 7.7e-77 | FFCP PHASE1:Hg19::chr16:57397561..57397572,+#_c5591d524f3ee23be59b239e41342b75 | p@chr16:57397561..57397572, + |
| 8.79e-75 | FFCP PHASE1:Hg19::chr2:173867941..173867955,+#_c0621686af8972180e53853ae5301c92 | p@chr2:173867941..173867955, + |
| 8.79e-75 | FFCP PHASE1:Hg19::chr1:159272441..159272452,+#_c0621686af8972180e53853ae5301c92 | p5@FCER1A |
| 8.79e-75 | FFCP PHASE1:Hg19::chr13:75884255..75884262,-#_c0621686af8972180e53853ae5301c92 | p@chr13:75884255..75884262, - |
| 8.79e-75 | FFCP PHASE2:Hg19::chr1:159272441..159272452,+#_c0621686af8972180e53853ae5301c92 | p5@FCER1A |
