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|located_in=
|located_in=
|name=immature conventional dendritic cell
|name=immature conventional dendritic cell
|namespace=cell;;efo
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:38, 12 September 2014

Name:immature conventional dendritic cell
Namespace:FANTOM
Definition:"An immature cell of the conventional dendritic cell lineage, characterized by high levels of antigen uptake via endocytosis, macropinocytosis, and phagocytosis, and typically found resident in the tissues. Markers for this cell are CD80-low, CD86-low, and MHC-II-low." [GOC:add, GOC:tfm, PMID:9521319]
Synonyms: "immature myeloid dendritic cell" NARROW []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000766(myeloid leukocyte),CL:0000990(conventional dendritic cell)
develops_from:CL:0001029(common dendritic progenitor)



Children


is a:CL:0001016 (immature CD1a-positive Langerhans cell)
derives from:FF:0000044 (human monocyte immature derived dendritic cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11904-125F5 (immature langerhans cells, donor1)
  • 11905-125F6 (immature langerhans cells, donor2)

Mouse (Mus musculus)

  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11904-125F5 (immature langerhans cells, donor1)
  • 11905-125F6 (immature langerhans cells, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000840 (immature conventional dendritic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.64e-136FFCP PHASE2:Hg19::chr1:159272441..159272452,+#_931403614a9d239dc8a0da0a03725af0p5@FCER1A
2.64e-136FFCP PHASE1:Hg19::chr1:159272441..159272452,+#_931403614a9d239dc8a0da0a03725af0p5@FCER1A
3.49e-136FFCP PHASE2:Hg19::chr1:159272420..159272431,+#_593ebf643c3c73524329de2cfb25e987p3@FCER1A
3.49e-136FFCP PHASE1:Hg19::chr1:159272420..159272431,+#_593ebf643c3c73524329de2cfb25e987p3@FCER1A
4.61e-136FFCP PHASE2:Hg19::chr2:61080954..61080964,+#_e2bf9d4b28d10fd73c7a1f5086a9e4b5p@chr2:61080954..61080964, +
4.61e-136FFCP PHASE1:Hg19::chr2:61080954..61080964,+#_e2bf9d4b28d10fd73c7a1f5086a9e4b5p@chr2:61080954..61080964, +
1.07e-130FFCP PHASE2:Hg19::chr4:16267477..16267486,-#_cbdc55a3086352bdf55258ecae4b96e7p@chr4:16267477..16267486, -
1.07e-130FFCP PHASE1:Hg19::chr4:16267477..16267486,-#_cbdc55a3086352bdf55258ecae4b96e7p@chr4:16267477..16267486, -
1.07e-130FFCP PHASE1:Hg19::chr17:6982145..6982156,-#_cbdc55a3086352bdf55258ecae4b96e7p1@CU691636
1.07e-130FFCP PHASE2:Hg19::chr17:6982145..6982156,-#_cbdc55a3086352bdf55258ecae4b96e7p1@CU691636
3.08e-117FFCP PHASE2:Hg19::chr1:158224278..158224289,+#_50a585c090ad6fd4d7be035c7ad012f5p9@CD1A
3.08e-117FFCP PHASE1:Hg19::chr1:158224278..158224289,+#_50a585c090ad6fd4d7be035c7ad012f5p9@CD1A
6.33e-117FFCP PHASE2:Hg19::chr9:124030015..124030022,+#_21385c76ecc32c038902b58f98cd2ec0p43@GSN
6.33e-117FFCP PHASE1:Hg19::chr9:124030015..124030022,+#_21385c76ecc32c038902b58f98cd2ec0p43@GSN
6.76e-105FFCP PHASE1:Hg19::chr17:6983503..6983512,-#_edd16b8ccb168290f35ecb1c32b10a13p5@CLEC10A
6.76e-105FFCP PHASE2:Hg19::chr17:6983503..6983512,-#_edd16b8ccb168290f35ecb1c32b10a13p5@CLEC10A
1.51e-104FFCP PHASE1:Hg19::chr12:121976278..121976285,-#_45142518047a6acd5664f83a27fa5509p@chr12:121976278..121976285, -
1.51e-104FFCP PHASE2:Hg19::chr12:121976278..121976285,-#_45142518047a6acd5664f83a27fa5509p@chr12:121976278..121976285, -
6.22e-103FFCP PHASE1:Hg19::chr1:158224235..158224244,+#_420eb3608e013c60307e18d7c23842dap10@CD1A
6.22e-103FFCP PHASE2:Hg19::chr1:158224235..158224244,+#_420eb3608e013c60307e18d7c23842dap10@CD1A
9.47e-103FFCP PHASE1:Hg19::chr17:6983479..6983490,-#_ac0f7a23411634ffd4b3e07d11d2c161p4@CLEC10A
9.47e-103FFCP PHASE2:Hg19::chr17:6983479..6983490,-#_ac0f7a23411634ffd4b3e07d11d2c161p4@CLEC10A
4.11e-102FFCP PHASE1:Hg19::chr15:101535004..101535045,+#_92678a14e4537d9c4054cd11267f5641p@chr15:101535004..101535045, +
4.11e-102FFCP PHASE2:Hg19::chr15:101535004..101535045,+#_92678a14e4537d9c4054cd11267f5641p@chr15:101535004..101535045, +
1.83e-98FFCP PHASE2:Hg19::chr11:1870362..1870366,-#_433ffed6aaf030609cbb815c90826d62p@chr11:1870362..1870366, -
1.83e-98FFCP PHASE2:Hg19::chr8:97906247..97906259,+#_433ffed6aaf030609cbb815c90826d62p@chr8:97906247..97906259, +
1.83e-98FFCP PHASE2:Hg19::chr11:7544941..7544949,+#_433ffed6aaf030609cbb815c90826d62p@chr11:7544941..7544949, +
1.83e-98FFCP PHASE1:Hg19::chr4:91005462..91005483,+#_433ffed6aaf030609cbb815c90826d62p@chr4:91005462..91005483, +
1.83e-98FFCP PHASE2:Hg19::chr2:218954217..218954224,+#_433ffed6aaf030609cbb815c90826d62p@chr2:218954217..218954224, +
1.83e-98FFCP PHASE1:Hg19::chr2:218933972..218933980,+#_433ffed6aaf030609cbb815c90826d62p1@RUFY4
1.83e-98FFCP PHASE2:Hg19::chr16:5070595..5070602,-#_433ffed6aaf030609cbb815c90826d62p@chr16:5070595..5070602, -
1.83e-98FFCP PHASE1:Hg19::chr4:169633317..169633344,+#_433ffed6aaf030609cbb815c90826d62p43@PALLD
1.83e-98FFCP PHASE2:Hg19::chr10:119014647..119014658,+#_433ffed6aaf030609cbb815c90826d62p@chr10:119014647..119014658, +
1.83e-98FFCP PHASE1:Hg19::chr8:97906247..97906259,+#_433ffed6aaf030609cbb815c90826d62p@chr8:97906247..97906259, +
1.83e-98FFCP PHASE2:Hg19::chr4:78105380..78105389,+#_433ffed6aaf030609cbb815c90826d62p@chr4:78105380..78105389, +
1.83e-98FFCP PHASE1:Hg19::chr20:15229663..15229673,+#_433ffed6aaf030609cbb815c90826d62p@chr20:15229663..15229673, +
1.83e-98FFCP PHASE1:Hg19::chr17:26970962..26970974,-#_433ffed6aaf030609cbb815c90826d62p5@KIAA0100
1.83e-98FFCP PHASE1:Hg19::chr10:127738495..127738498,-#_433ffed6aaf030609cbb815c90826d62p@chr10:127738495..127738498, -
1.83e-98FFCP PHASE1:Hg19::chr5:86707848..86707855,-#_433ffed6aaf030609cbb815c90826d62p@chr5:86707848..86707855, -
1.83e-98FFCP PHASE1:Hg19::chr17:46058415..46058422,+#_433ffed6aaf030609cbb815c90826d62p@chr17:46058415..46058422, +
1.83e-98FFCP PHASE2:Hg19::chr6:42145703..42145716,+#_433ffed6aaf030609cbb815c90826d62p@chr6:42145703..42145716, +
1.83e-98FFCP PHASE2:Hg19::chr19:10246051..10246052,+#_433ffed6aaf030609cbb815c90826d62p@chr19:10246051..10246052, +
1.83e-98FFCP PHASE1:Hg19::chr1:153744224..153744233,+#_433ffed6aaf030609cbb815c90826d62p@chr1:153744224..153744233, +
1.83e-98FFCP PHASE2:Hg19::chr10:127738551..127738554,-#_433ffed6aaf030609cbb815c90826d62p@chr10:127738551..127738554, -
1.83e-98FFCP PHASE2:Hg19::chr5:52909608..52909635,+#_433ffed6aaf030609cbb815c90826d62p@chr5:52909608..52909635, +
1.83e-98FFCP PHASE2:Hg19::chr17:46058415..46058422,+#_433ffed6aaf030609cbb815c90826d62p@chr17:46058415..46058422, +
1.83e-98FFCP PHASE1:Hg19::chr6:42145678..42145695,+#_433ffed6aaf030609cbb815c90826d62p@chr6:42145678..42145695, +
1.83e-98FFCP PHASE2:Hg19::chr17:26970962..26970974,-#_433ffed6aaf030609cbb815c90826d62p5@KIAA0100
1.83e-98FFCP PHASE1:Hg19::chr12:8278143..8278154,+#_433ffed6aaf030609cbb815c90826d62p@chr12:8278143..8278154, +
1.83e-98FFCP PHASE2:Hg19::chr1:224398082..224398104,-#_433ffed6aaf030609cbb815c90826d62p2@ENST00000453760
1.83e-98FFCP PHASE1:Hg19::chr6:32156759..32156767,+#_433ffed6aaf030609cbb815c90826d62p@chr6:32156759..32156767, +
1.83e-98FFCP PHASE1:Hg19::chr14:55590616..55590617,+#_433ffed6aaf030609cbb815c90826d62p33@LGALS3
1.83e-98FFCP PHASE2:Hg19::chr11:1870376..1870388,-#_433ffed6aaf030609cbb815c90826d62p@chr11:1870376..1870388, -
1.83e-98FFCP PHASE2:Hg19::chr9:131235669..131235680,+#_433ffed6aaf030609cbb815c90826d62p@chr9:131235669..131235680, +
1.83e-98FFCP PHASE1:Hg19::chr11:7544914..7544928,+#_433ffed6aaf030609cbb815c90826d62p@chr11:7544914..7544928, +
1.83e-98FFCP PHASE1:Hg19::chr2:218954217..218954224,+#_433ffed6aaf030609cbb815c90826d62p@chr2:218954217..218954224, +
1.83e-98FFCP PHASE2:Hg19::chr10:119014661..119014665,+#_433ffed6aaf030609cbb815c90826d62p@chr10:119014661..119014665, +
1.83e-98FFCP PHASE2:Hg19::chr3:152588255..152588266,+#_433ffed6aaf030609cbb815c90826d62p@chr3:152588255..152588266, +
1.83e-98FFCP PHASE2:Hg19::chr12:8278143..8278154,+#_433ffed6aaf030609cbb815c90826d62p@chr12:8278143..8278154, +
1.83e-98FFCP PHASE1:Hg19::chr4:78105380..78105389,+#_433ffed6aaf030609cbb815c90826d62p@chr4:78105380..78105389, +
1.83e-98FFCP PHASE1:Hg19::chr17:46058427..46058445,+#_433ffed6aaf030609cbb815c90826d62p@chr17:46058427..46058445, +
1.83e-98FFCP PHASE1:Hg19::chr14:91019196..91019216,-#_433ffed6aaf030609cbb815c90826d62p@chr14:91019196..91019216, -
1.83e-98FFCP PHASE2:Hg19::chr8:20258288..20258300,+#_433ffed6aaf030609cbb815c90826d62p@chr8:20258288..20258300, +
1.83e-98FFCP PHASE2:Hg19::chr14:55590616..55590617,+#_433ffed6aaf030609cbb815c90826d62p33@LGALS3
1.83e-98FFCP PHASE2:Hg19::chr17:46058427..46058445,+#_433ffed6aaf030609cbb815c90826d62p@chr17:46058427..46058445, +
1.83e-98FFCP PHASE1:Hg19::chr5:52909608..52909635,+#_433ffed6aaf030609cbb815c90826d62p@chr5:52909608..52909635, +
1.83e-98FFCP PHASE1:Hg19::chr6:42145703..42145716,+#_433ffed6aaf030609cbb815c90826d62p@chr6:42145703..42145716, +
1.83e-98FFCP PHASE1:Hg19::chr19:10246051..10246052,+#_433ffed6aaf030609cbb815c90826d62p@chr19:10246051..10246052, +
1.83e-98FFCP PHASE1:Hg19::chr1:224398082..224398104,-#_433ffed6aaf030609cbb815c90826d62p2@ENST00000453760
1.83e-98FFCP PHASE2:Hg19::chr16:57399108..57399115,+#_433ffed6aaf030609cbb815c90826d62p@chr16:57399108..57399115, +
1.83e-98FFCP PHASE2:Hg19::chr9:131235697..131235702,+#_433ffed6aaf030609cbb815c90826d62p@chr9:131235697..131235702, +
1.83e-98FFCP PHASE2:Hg19::chr14:91019196..91019216,-#_433ffed6aaf030609cbb815c90826d62p@chr14:91019196..91019216, -
1.83e-98FFCP PHASE1:Hg19::chr11:7544941..7544949,+#_433ffed6aaf030609cbb815c90826d62p@chr11:7544941..7544949, +
1.83e-98FFCP PHASE1:Hg19::chr9:131235669..131235680,+#_433ffed6aaf030609cbb815c90826d62p@chr9:131235669..131235680, +
1.83e-98FFCP PHASE2:Hg19::chr10:127738495..127738498,-#_433ffed6aaf030609cbb815c90826d62p@chr10:127738495..127738498, -
1.83e-98FFCP PHASE2:Hg19::chr4:26887004..26887011,-#_433ffed6aaf030609cbb815c90826d62p@chr4:26887004..26887011, -
1.83e-98FFCP PHASE1:Hg19::chr17:67125354..67125365,-#_433ffed6aaf030609cbb815c90826d62p@chr17:67125354..67125365, -
1.83e-98FFCP PHASE1:Hg19::chr10:127738525..127738534,-#_433ffed6aaf030609cbb815c90826d62p@chr10:127738525..127738534, -
1.83e-98FFCP PHASE1:Hg19::chr12:1725865..1725884,+#_433ffed6aaf030609cbb815c90826d62p7@WNT5B
1.83e-98FFCP PHASE1:Hg19::chr10:46048740..46048751,-#_433ffed6aaf030609cbb815c90826d62p@chr10:46048740..46048751, -
1.83e-98FFCP PHASE2:Hg19::chr8:20258347..20258360,+#_433ffed6aaf030609cbb815c90826d62p@chr8:20258347..20258360, +
1.83e-98FFCP PHASE1:Hg19::chr16:5070595..5070602,-#_433ffed6aaf030609cbb815c90826d62p@chr16:5070595..5070602, -
1.83e-98FFCP PHASE2:Hg19::chr6:154521063..154521071,-#_433ffed6aaf030609cbb815c90826d62p@chr6:154521063..154521071, -
1.83e-98FFCP PHASE1:Hg19::chr8:20258288..20258300,+#_433ffed6aaf030609cbb815c90826d62p@chr8:20258288..20258300, +
1.83e-98FFCP PHASE1:Hg19::chr3:152588255..152588266,+#_433ffed6aaf030609cbb815c90826d62p@chr3:152588255..152588266, +
1.83e-98FFCP PHASE1:Hg19::chr15:45454976..45454985,+#_433ffed6aaf030609cbb815c90826d62p@chr15:45454976..45454985, +
1.83e-98FFCP PHASE1:Hg19::chr11:1870362..1870366,-#_433ffed6aaf030609cbb815c90826d62p@chr11:1870362..1870366, -
1.83e-98FFCP PHASE2:Hg19::chr17:67125354..67125365,-#_433ffed6aaf030609cbb815c90826d62p@chr17:67125354..67125365, -
1.83e-98FFCP PHASE1:Hg19::chr17:26961255..26961266,-#_433ffed6aaf030609cbb815c90826d62p@chr17:26961255..26961266, -
1.83e-98FFCP PHASE2:Hg19::chr8:17777952..17777982,-#_433ffed6aaf030609cbb815c90826d62p@chr8:17777952..17777982, -
1.83e-98FFCP PHASE2:Hg19::chr19:17843005..17843009,+#_433ffed6aaf030609cbb815c90826d62p@chr19:17843005..17843009, +
1.83e-98FFCP PHASE1:Hg19::chr9:131235697..131235702,+#_433ffed6aaf030609cbb815c90826d62p@chr9:131235697..131235702, +
1.83e-98FFCP PHASE1:Hg19::chr10:119014647..119014658,+#_433ffed6aaf030609cbb815c90826d62p@chr10:119014647..119014658, +
1.83e-98FFCP PHASE2:Hg19::chr17:26961255..26961266,-#_433ffed6aaf030609cbb815c90826d62p@chr17:26961255..26961266, -
1.83e-98FFCP PHASE2:Hg19::chr15:45454976..45454985,+#_433ffed6aaf030609cbb815c90826d62p@chr15:45454976..45454985, +
1.83e-98FFCP PHASE1:Hg19::chr4:26887004..26887011,-#_433ffed6aaf030609cbb815c90826d62p@chr4:26887004..26887011, -
1.83e-98FFCP PHASE1:Hg19::chr10:127738551..127738554,-#_433ffed6aaf030609cbb815c90826d62p@chr10:127738551..127738554, -
1.83e-98FFCP PHASE2:Hg19::chr4:91005462..91005483,+#_433ffed6aaf030609cbb815c90826d62p@chr4:91005462..91005483, +
1.83e-98FFCP PHASE1:Hg19::chr17:46058452..46058468,+#_433ffed6aaf030609cbb815c90826d62p@chr17:46058452..46058468, +
1.83e-98FFCP PHASE2:Hg19::chr11:7544914..7544928,+#_433ffed6aaf030609cbb815c90826d62p@chr11:7544914..7544928, +

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