UBERON:0000965: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=lens of camera-type eye | |name=lens of camera-type eye | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001801 | |part_of=UBERON:0001801 | ||
Latest revision as of 17:12, 12 September 2014
| Name: | lens of camera-type eye | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)] | ||
| Xrefs: |
| ||
| Synonyms: |
"camera-type eye lens" EXACT [GO:0002088] "crystalline lens" RELATED [BTO:0000723] "eye lens" EXACT SENSU [] "lens" EXACT SENSU [] "lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29] "ocular lens" RELATED [BTO:0000723] | ||
| Comments: | Taxon notes: This class excludes compound eye corneal lenses. | ||
| Alt_id: | UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0005389(transparent eye structure) |
|---|---|
| develops_from: | UBERON:0003073(lens placode),UBERON:0005426(lens vesicle) |
| part_of: | UBERON:0001801(anterior segment of eyeball) |
Children
| part of: | UBERON:0001803 (epithelium of lens),CL:0002222 (vertebrate lens cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000965 (lens of camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_bf7628fdbb77c7c9c868880a0ad37790 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_bf7628fdbb77c7c9c868880a0ad37790 | p1@CRYBB3 |
| 3.32e-74 | FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_3501be66381186fb3e195617408f3ce4 | p1@CRYBB2 |
| 3.32e-74 | FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_3501be66381186fb3e195617408f3ce4 | p1@CRYBB2 |
| 5.48e-74 | FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_b8f0f55557df01aa5642e9a0d4d2497e | p1@LIM2 |
| 5.48e-74 | FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_b8f0f55557df01aa5642e9a0d4d2497e | p1@LIM2 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_c2e50d6bb75fbf6a15f08eabbd28854b | p1@CRYBA4 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_c2e50d6bb75fbf6a15f08eabbd28854b | p1@CRYBA4 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_ca5c5c3b6cf6bd697f33eb909eaa2cf5 | p@chr20:61204240..61204241, + |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38 | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38 | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38 | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_4caf4d1f1bd2ff0abb65a6f54bbd7c38 | p7@SLC25A21 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_f21dd70918184d5d51b8304d91aed573 | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_f21dd70918184d5d51b8304d91aed573 | p1@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_f21dd70918184d5d51b8304d91aed573 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_f21dd70918184d5d51b8304d91aed573 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_f21dd70918184d5d51b8304d91aed573 | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_f21dd70918184d5d51b8304d91aed573 | p1@CU686889 |
| 6.27e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_e8c218d7a11798d28d4e7e47b24acbb2 | p11@PAX6 |
| 6.27e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_e8c218d7a11798d28d4e7e47b24acbb2 | p11@PAX6 |
| 1.92e-41 | FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_eb39978568cba818d6e32e02f0035198 | p1@CRYGS |
| 1.92e-41 | FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_eb39978568cba818d6e32e02f0035198 | p1@CRYGS |
| 4.94e-40 | FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_73bf020a98b5a1f6d05a4eb11c02af4f | p@chr5:112173525..112173532, + |
| 4.94e-40 | FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_73bf020a98b5a1f6d05a4eb11c02af4f | p@chr5:112173525..112173532, + |
| 1.62e-37 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_0e84c0a9e92db5ba165f7c8b201df4dd | p7@PTPRU |
| 1.62e-37 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_0e84c0a9e92db5ba165f7c8b201df4dd | p7@PTPRU |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_fa803b69ae0ce2906078d7f7c08d9ff3 | p3@SIX6 |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_fa803b69ae0ce2906078d7f7c08d9ff3 | p3@SIX6 |
| 6.73e-35 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_ca62458fc3b136fdbccb6798e6cf7486 | p4@SIX6 |
| 6.73e-35 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_ca62458fc3b136fdbccb6798e6cf7486 | p4@SIX6 |
| 5.06e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_c9c138dd5d177440519d5d3550fa7281 | p@chr11:31667372..31667383, - |
| 5.06e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_c9c138dd5d177440519d5d3550fa7281 | p@chr11:31667372..31667383, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_4d2594aee41f6b0adef4df16ecb8b9a5 | p@chr19:1470631..1470648, - |
| 8.36e-34 | FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_4d2594aee41f6b0adef4df16ecb8b9a5 | p@chr19:1470631..1470648, - |
| 5.55e-33 | FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_e6a1edd1e2367b4c1ab623f897ebb3c6 | p1@CRYAA |
| 5.55e-33 | FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_e6a1edd1e2367b4c1ab623f897ebb3c6 | p1@CRYAA |
| 9.55e-33 | FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_841f0e4562df6ebadbe03070c0cd0808 | p1@CRYBA1 |
| 9.55e-33 | FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_841f0e4562df6ebadbe03070c0cd0808 | p1@CRYBA1 |
| 2.74e-29 | FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_6a8ad5ba345672fb60e4aae9b0a62da5 | p2@ENST00000456467 |
| 2.74e-29 | FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_6a8ad5ba345672fb60e4aae9b0a62da5 | p2@ENST00000456467 |
| 3.65e-29 | FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_8bac19553cde3b06335c25326de51b0e | p13@NRCAM |
| 3.65e-29 | FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_8bac19553cde3b06335c25326de51b0e | p13@NRCAM |
| 7.46e-29 | FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_5e0973ef2a9a8f1261fe11caddb62f58 | p@chr13:114202163..114202178, + |
| 7.46e-29 | FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_5e0973ef2a9a8f1261fe11caddb62f58 | p@chr13:114202163..114202178, + |
| 1.36e-28 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_72194d1989075d42e04136a3c48eb207 | p10@NLGN1 |
| 1.36e-28 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_72194d1989075d42e04136a3c48eb207 | p10@NLGN1 |
| 2.64e-27 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_7992cd3a08195f1d2aac3a6862052f7f | p10@SIX3 |
| 2.64e-27 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_7992cd3a08195f1d2aac3a6862052f7f | p10@SIX3 |
| 8.39e-27 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_fa704f3d401b243ec1f60d3cda148b1f | p2@SIX6 |
| 8.39e-27 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_fa704f3d401b243ec1f60d3cda148b1f | p2@SIX6 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_99b3056610c333f5cc0da1456e00e964 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_99b3056610c333f5cc0da1456e00e964 | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_99b3056610c333f5cc0da1456e00e964 | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_99b3056610c333f5cc0da1456e00e964 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_99b3056610c333f5cc0da1456e00e964 | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_99b3056610c333f5cc0da1456e00e964 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_99b3056610c333f5cc0da1456e00e964 | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_99b3056610c333f5cc0da1456e00e964 | p1@GJA8 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_99b3056610c333f5cc0da1456e00e964 | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_99b3056610c333f5cc0da1456e00e964 | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_99b3056610c333f5cc0da1456e00e964 | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_99b3056610c333f5cc0da1456e00e964 | p@chr9:75848662..75848671, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr3:156322310..156322314, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_d394e44e71c606f8fbe367682d8ee9d4 | p3@NDUFA5 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_d394e44e71c606f8fbe367682d8ee9d4 | p5@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_d394e44e71c606f8fbe367682d8ee9d4 | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_d394e44e71c606f8fbe367682d8ee9d4 | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr5:45038620..45038622, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:693025..693036,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr2:693025..693036, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_d394e44e71c606f8fbe367682d8ee9d4 | p4@CU686889 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_d394e44e71c606f8fbe367682d8ee9d4 | p1@MIP |
| 7.14e-26 | FFCP PHASE1:Hg19::chr13:44875179..44875188,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:45769711..45769721,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr1:45769711..45769721, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:464155..464205,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr21:44592358..44592365, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_d394e44e71c606f8fbe367682d8ee9d4 | p11@UQCC |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr12:56848437..56848442,-#_d394e44e71c606f8fbe367682d8ee9d4 | p1@MIP |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:36253916..36253918,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr21:36253916..36253918, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_d394e44e71c606f8fbe367682d8ee9d4 | p30@PDP1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_d394e44e71c606f8fbe367682d8ee9d4 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr11:65361417..65361421,-#_d394e44e71c606f8fbe367682d8ee9d4 | p2@KCNK7 |
