UBERON:0002108: Difference between revisions
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|located_in= | |located_in= | ||
|name=small intestine | |name=small intestine | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000160 | |part_of=UBERON:0000160 | ||
Latest revision as of 17:26, 12 September 2014
| Name: | small intestine | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. <a href | ||
| Xrefs: |
| ||
| Synonyms: |
"anterior intestine" RELATED [] "intestinum tenue" RELATED [BTO:0000651] "intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine] "mid intestine" RELATED [] "small bowel" EXACT [] "small intestine" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323 | ||
| Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
200px-Stomach_colon_rectum_diagram.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element) |
|---|---|
| part_of: | UBERON:0000160(intestine) |
Children
| derives from: | FF:0010024 (human small intestine - adult sample),FF:0010064 (human small intestine - fetal sample),FF:0011425 (mouse small intestine- neonate N16 sample) |
|---|---|
| part of: | UBERON:0001168 (wall of small intestine),UBERON:0001204 (mucosa of small intestine),UBERON:0001902 (epithelium of small intestine),UBERON:0002114 (duodenum),UBERON:0002116 (ileum),CL:0002254 (epithelial cell of small intestine),FF:0010064 (human small intestine - fetal sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10024-101D6 (small intestine, adult, pool1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
... further results Mouse (Mus musculus)
- 10024-101D6 (small intestine, adult, pool1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002108 (small intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.76e-118 | FFCP PHASE2:Hg19::chr11:619585..619593,-#_435964a2e31fa1616664c20df1d104c9 | p@chr11:619585..619593, - |
| 7.76e-118 | FFCP PHASE1:Hg19::chr5:176005056..176005065,+#_435964a2e31fa1616664c20df1d104c9 | p10@CDHR2 |
| 7.76e-118 | FFCP PHASE2:Hg19::chr11:65594646..65594649,-#_435964a2e31fa1616664c20df1d104c9 | p@chr11:65594646..65594649, - |
| 7.76e-118 | FFCP PHASE1:Hg19::chr11:65594646..65594649,-#_435964a2e31fa1616664c20df1d104c9 | p@chr11:65594646..65594649, - |
| 7.76e-118 | FFCP PHASE1:Hg19::chr11:116691672..116691682,-#_435964a2e31fa1616664c20df1d104c9 | p@chr11:116691672..116691682, - |
| 7.76e-118 | FFCP PHASE2:Hg19::chr11:116691672..116691682,-#_435964a2e31fa1616664c20df1d104c9 | p@chr11:116691672..116691682, - |
| 7.76e-118 | FFCP PHASE1:Hg19::chr1:220292349..220292367,-#_435964a2e31fa1616664c20df1d104c9 | p@chr1:220292349..220292367, - |
| 7.76e-118 | FFCP PHASE2:Hg19::chr1:220292349..220292367,-#_435964a2e31fa1616664c20df1d104c9 | p@chr1:220292349..220292367, - |
| 7.76e-118 | FFCP PHASE2:Hg19::chr5:176005056..176005065,+#_435964a2e31fa1616664c20df1d104c9 | p10@CDHR2 |
| 7.76e-118 | FFCP PHASE1:Hg19::chr11:619585..619593,-#_435964a2e31fa1616664c20df1d104c9 | p@chr11:619585..619593, - |
| 6.64e-89 | FFCP PHASE1:Hg19::chr6:56558260..56558263,-#_7da718c66ffbce892e7ecea27df01f8f | p154@DST |
| 6.64e-89 | FFCP PHASE1:Hg19::chr4:165675197..165675206,+#_7da718c66ffbce892e7ecea27df01f8f | p1@ENST00000515485 |
| 6.64e-89 | FFCP PHASE1:Hg19::chr4:156787425..156787429,-#_7da718c66ffbce892e7ecea27df01f8f | p1@ACCN5 |
| 6.64e-89 | FFCP PHASE2:Hg19::chr3:44248030..44248052,-#_7da718c66ffbce892e7ecea27df01f8f | p@chr3:44248030..44248052, - |
| 6.64e-89 | FFCP PHASE1:Hg19::chr3:44248030..44248052,-#_7da718c66ffbce892e7ecea27df01f8f | p@chr3:44248030..44248052, - |
| 6.64e-89 | FFCP PHASE2:Hg19::chr6:56558260..56558263,-#_7da718c66ffbce892e7ecea27df01f8f | p154@DST |
| 6.64e-89 | FFCP PHASE2:Hg19::chr4:165675197..165675206,+#_7da718c66ffbce892e7ecea27df01f8f | p1@ENST00000515485 |
| 6.64e-89 | FFCP PHASE2:Hg19::chr4:156787425..156787429,-#_7da718c66ffbce892e7ecea27df01f8f | p1@ACCN5 |
| 8.98e-89 | FFCP PHASE1:Hg19::chr11:621654..621664,-#_c2755f66139126ee99ab7acf73f5fb79 | p@chr11:621654..621664, - |
| 8.98e-89 | FFCP PHASE2:Hg19::chr7:100686501..100686512,+#_c2755f66139126ee99ab7acf73f5fb79 | p4@MUC17 |
| 8.98e-89 | FFCP PHASE2:Hg19::chr11:621654..621664,-#_c2755f66139126ee99ab7acf73f5fb79 | p@chr11:621654..621664, - |
| 8.98e-89 | FFCP PHASE1:Hg19::chr7:100686501..100686512,+#_c2755f66139126ee99ab7acf73f5fb79 | p4@MUC17 |
| 8.98e-89 | FFCP PHASE2:Hg19::chr3:100328486..100328495,+#_c2755f66139126ee99ab7acf73f5fb79 | p4@GPR128 |
| 8.98e-89 | FFCP PHASE1:Hg19::chr3:100328486..100328495,+#_c2755f66139126ee99ab7acf73f5fb79 | p4@GPR128 |
| 1.21e-88 | FFCP PHASE1:Hg19::chr2:211409943..211409950,+#_849bb4c6ed2ffaaa85b232e877b0baf5 | p@chr2:211409943..211409950, + |
| 1.21e-88 | FFCP PHASE2:Hg19::chr5:132149207..132149222,+#_849bb4c6ed2ffaaa85b232e877b0baf5 | p9@SOWAHA |
| 1.21e-88 | FFCP PHASE1:Hg19::chr5:132149207..132149222,+#_849bb4c6ed2ffaaa85b232e877b0baf5 | p9@SOWAHA |
| 1.21e-88 | FFCP PHASE2:Hg19::chr16:3704724..3704727,+#_849bb4c6ed2ffaaa85b232e877b0baf5 | p8@DNASE1 |
| 1.21e-88 | FFCP PHASE2:Hg19::chr2:211409943..211409950,+#_849bb4c6ed2ffaaa85b232e877b0baf5 | p@chr2:211409943..211409950, + |
| 1.21e-88 | FFCP PHASE1:Hg19::chr16:3704724..3704727,+#_849bb4c6ed2ffaaa85b232e877b0baf5 | p8@DNASE1 |
| 1.64e-88 | FFCP PHASE2:Hg19::chr4:667307..667315,+#_7e50b2510dea7dbaf67c74c2b796d88d | p17@MYL5 |
| 1.64e-88 | FFCP PHASE2:Hg19::chr10:19489600..19489603,+#_7e50b2510dea7dbaf67c74c2b796d88d | p@chr10:19489600..19489603, + |
| 1.64e-88 | FFCP PHASE1:Hg19::chr4:667307..667315,+#_7e50b2510dea7dbaf67c74c2b796d88d | p17@MYL5 |
| 1.64e-88 | FFCP PHASE1:Hg19::chr10:19489600..19489603,+#_7e50b2510dea7dbaf67c74c2b796d88d | p@chr10:19489600..19489603, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr17:26818577..26818591,+#_b946998361fa4f1c25de62773a32a310 | p@chr17:26818577..26818591, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr5:1219157..1219189,+#_b946998361fa4f1c25de62773a32a310 | p7@SLC6A19 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:27240078..27240086,-#_b946998361fa4f1c25de62773a32a310 | p7@NR0B2 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr12:14831594..14831617,-#_b946998361fa4f1c25de62773a32a310 | p@chr12:14831594..14831617, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:27240078..27240086,-#_b946998361fa4f1c25de62773a32a310 | p7@NR0B2 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr17:26818577..26818591,+#_b946998361fa4f1c25de62773a32a310 | p@chr17:26818577..26818591, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr15:42691624..42691627,+#_b946998361fa4f1c25de62773a32a310 | p@chr15:42691624..42691627, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr5:1219157..1219189,+#_b946998361fa4f1c25de62773a32a310 | p7@SLC6A19 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr15:42691624..42691627,+#_b946998361fa4f1c25de62773a32a310 | p@chr15:42691624..42691627, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr10:102792271..102792279,-#_b946998361fa4f1c25de62773a32a310 | p@chr10:102792271..102792279, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:27240046..27240053,-#_b946998361fa4f1c25de62773a32a310 | p8@NR0B2 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr10:102792271..102792279,-#_b946998361fa4f1c25de62773a32a310 | p@chr10:102792271..102792279, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:220292419..220292423,-#_b946998361fa4f1c25de62773a32a310 | p@chr1:220292419..220292423, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr12:14831594..14831617,-#_b946998361fa4f1c25de62773a32a310 | p@chr12:14831594..14831617, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:27240046..27240053,-#_b946998361fa4f1c25de62773a32a310 | p8@NR0B2 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:220292419..220292423,-#_b946998361fa4f1c25de62773a32a310 | p@chr1:220292419..220292423, - |
| 8.69e-79 | FFCP PHASE2:Hg19::chr2:201242740..201242755,+#_34fb8743a6f779cf1d15dd75a0d41ff2 | p25@SPATS2L |
| 8.69e-79 | FFCP PHASE1:Hg19::chr2:201242740..201242755,+#_34fb8743a6f779cf1d15dd75a0d41ff2 | p25@SPATS2L |
| 1.56e-71 | FFCP PHASE1:Hg19::chr3:124646562..124646577,+#_b64698bbda41ed82954e5e9e129749c6 | p@chr3:124646562..124646577, + |
| 1.56e-71 | FFCP PHASE2:Hg19::chr3:124646421..124646431,-#_b64698bbda41ed82954e5e9e129749c6 | p8@MUC13 |
| 1.56e-71 | FFCP PHASE1:Hg19::chr3:164786944..164786952,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr3:164786944..164786952, - |
| 1.56e-71 | FFCP PHASE2:Hg19::chr6:46048116..46048129,-#_b64698bbda41ed82954e5e9e129749c6 | p10@CLIC5 |
| 1.56e-71 | FFCP PHASE2:Hg19::chr17:48352265..48352274,+#_b64698bbda41ed82954e5e9e129749c6 | p4@TMEM92 |
| 1.56e-71 | FFCP PHASE2:Hg19::chr22:41273544..41273549,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr22:41273544..41273549, - |
| 1.56e-71 | FFCP PHASE2:Hg19::chr7:100551219..100551228,+#_b64698bbda41ed82954e5e9e129749c6 | p26@MUC3A, p26@MUC3B |
| 1.56e-71 | FFCP PHASE1:Hg19::chr3:124646421..124646431,-#_b64698bbda41ed82954e5e9e129749c6 | p8@MUC13 |
| 1.56e-71 | FFCP PHASE2:Hg19::chr8:145640636..145640647,-#_b64698bbda41ed82954e5e9e129749c6 | p11@SLC39A4 |
| 1.56e-71 | FFCP PHASE1:Hg19::chr7:100551219..100551228,+#_b64698bbda41ed82954e5e9e129749c6 | p26@MUC3A, p26@MUC3B |
| 1.56e-71 | FFCP PHASE2:Hg19::chr11:65594666..65594676,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr11:65594666..65594676, - |
| 1.56e-71 | FFCP PHASE1:Hg19::chr11:65594666..65594676,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr11:65594666..65594676, - |
| 1.56e-71 | FFCP PHASE1:Hg19::chr6:46048116..46048129,-#_b64698bbda41ed82954e5e9e129749c6 | p10@CLIC5 |
| 1.56e-71 | FFCP PHASE2:Hg19::chr3:124625556..124625575,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr3:124625556..124625575, - |
| 1.56e-71 | FFCP PHASE2:Hg19::chr4:82136518..82136527,-#_b64698bbda41ed82954e5e9e129749c6 | p5@PRKG2 |
| 1.56e-71 | FFCP PHASE1:Hg19::chr22:41273544..41273549,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr22:41273544..41273549, - |
| 1.56e-71 | FFCP PHASE2:Hg19::chr15:45689405..45689411,-#_b64698bbda41ed82954e5e9e129749c6 | p21@GATM |
| 1.56e-71 | FFCP PHASE2:Hg19::chr3:124646562..124646577,+#_b64698bbda41ed82954e5e9e129749c6 | p@chr3:124646562..124646577, + |
| 1.56e-71 | FFCP PHASE1:Hg19::chr11:116691835..116691843,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr11:116691835..116691843, - |
| 1.56e-71 | FFCP PHASE1:Hg19::chr8:145640636..145640647,-#_b64698bbda41ed82954e5e9e129749c6 | p11@SLC39A4 |
| 1.56e-71 | FFCP PHASE1:Hg19::chr17:48352265..48352274,+#_b64698bbda41ed82954e5e9e129749c6 | p4@TMEM92 |
| 1.56e-71 | FFCP PHASE2:Hg19::chr11:116691835..116691843,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr11:116691835..116691843, - |
| 1.56e-71 | FFCP PHASE2:Hg19::chr3:164786944..164786952,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr3:164786944..164786952, - |
| 1.56e-71 | FFCP PHASE1:Hg19::chr3:124625556..124625575,-#_b64698bbda41ed82954e5e9e129749c6 | p@chr3:124625556..124625575, - |
| 1.56e-71 | FFCP PHASE1:Hg19::chr4:82136518..82136527,-#_b64698bbda41ed82954e5e9e129749c6 | p5@PRKG2 |
| 1.56e-71 | FFCP PHASE1:Hg19::chr15:45689405..45689411,-#_b64698bbda41ed82954e5e9e129749c6 | p21@GATM |
| 1.98e-71 | FFCP PHASE1:Hg19::chr6:49735878..49735918,+#_39de28d0956498d160745202dbfb0b4e | p@chr6:49735878..49735918, + |
| 1.98e-71 | FFCP PHASE2:Hg19::chr11:118404961..118404975,+#_39de28d0956498d160745202dbfb0b4e | p10@TMEM25 |
| 1.98e-71 | FFCP PHASE2:Hg19::chr3:124646456..124646472,-#_39de28d0956498d160745202dbfb0b4e | p5@MUC13 |
| 1.98e-71 | FFCP PHASE1:Hg19::chr11:118404961..118404975,+#_39de28d0956498d160745202dbfb0b4e | p10@TMEM25 |
| 1.98e-71 | FFCP PHASE1:Hg19::chr1:86934569..86934578,+#_39de28d0956498d160745202dbfb0b4e | p3@CLCA1 |
| 1.98e-71 | FFCP PHASE2:Hg19::chr4:57138426..57138434,+#_39de28d0956498d160745202dbfb0b4e | p5@KIAA1211 |
| 1.98e-71 | FFCP PHASE2:Hg19::chr7:100551230..100551237,+#_39de28d0956498d160745202dbfb0b4e | p27@MUC3A, p27@MUC3B |
| 1.98e-71 | FFCP PHASE2:Hg19::chr1:86934569..86934578,+#_39de28d0956498d160745202dbfb0b4e | p3@CLCA1 |
| 1.98e-71 | FFCP PHASE1:Hg19::chr3:124646456..124646472,-#_39de28d0956498d160745202dbfb0b4e | p5@MUC13 |
| 1.98e-71 | FFCP PHASE2:Hg19::chr3:164776780..164776815,-#_39de28d0956498d160745202dbfb0b4e | p@chr3:164776780..164776815, - |
| 1.98e-71 | FFCP PHASE1:Hg19::chr7:100551230..100551237,+#_39de28d0956498d160745202dbfb0b4e | p27@MUC3A, p27@MUC3B |
| 1.98e-71 | FFCP PHASE1:Hg19::chr4:57138426..57138434,+#_39de28d0956498d160745202dbfb0b4e | p5@KIAA1211 |
| 1.98e-71 | FFCP PHASE2:Hg19::chr6:49735878..49735918,+#_39de28d0956498d160745202dbfb0b4e | p@chr6:49735878..49735918, + |
| 1.98e-71 | FFCP PHASE1:Hg19::chr3:164776780..164776815,-#_39de28d0956498d160745202dbfb0b4e | p@chr3:164776780..164776815, - |
| 2.52e-71 | FFCP PHASE1:Hg19::chr4:82136547..82136556,-#_1f563d10183c067de93d33f35cd4a38e | p8@PRKG2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr8:145640522..145640534,-#_1f563d10183c067de93d33f35cd4a38e | p12@SLC39A4 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr4:82136439..82136449,-#_1f563d10183c067de93d33f35cd4a38e | p9@PRKG2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr22:39864954..39864993,+#_1f563d10183c067de93d33f35cd4a38e | p@chr22:39864954..39864993, + |
| 2.52e-71 | FFCP PHASE1:Hg19::chr17:77704749..77704760,+#_1f563d10183c067de93d33f35cd4a38e | p3@ENPP7 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr6:24667649..24667660,-#_1f563d10183c067de93d33f35cd4a38e | p12@TDP2 |
| 2.52e-71 | FFCP PHASE1:Hg19::chr1:120337001..120337022,-#_1f563d10183c067de93d33f35cd4a38e | p@chr1:120337001..120337022, - |
| 2.52e-71 | FFCP PHASE2:Hg19::chr3:124646501..124646510,-#_1f563d10183c067de93d33f35cd4a38e | p6@MUC13 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
