UBERON:0004770: Difference between revisions
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|located_in= | |located_in= | ||
|name=articular system | |name=articular system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
Latest revision as of 17:48, 12 September 2014
| Name: | articular system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical system that consists of all the joints of the body." [VSAO:0000181] | ||
| Xrefs: |
| ||
| Synonyms: |
"joint system" EXACT [FMA:23878] "set of all joints" RELATED [] "set of all joints of body" EXACT [FMA:23878] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system),UBERON:0000477(anatomical cluster) |
|---|---|
| part_of: | UBERON:0001434(skeletal system) |
Children
| disjoint from: | UBERON:0004288 (skeleton) |
|---|---|
| part of: | UBERON:0000982 (skeletal joint),UBERON:0004905 (articulation) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10267-104D6
- 10295-104G7 (cruciate ligament, donor2)
- 10323-105A8
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004770 (articular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.05e-102 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_8fb33d8a9e004fb30db71adc97b7e370 | p@chr3:174737010..174737023, + |
| 5.05e-102 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_8fb33d8a9e004fb30db71adc97b7e370 | p@chr3:174737010..174737023, + |
| 6.68e-88 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_2a0f96777b9b0438750f48caf76b313b | p4@PAX1 |
| 6.68e-88 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_2a0f96777b9b0438750f48caf76b313b | p4@PAX1 |
| 5.7e-81 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_0c6d11e0c78536bf0083e34f7ea08934 | p15@SNED1 |
| 5.7e-81 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_0c6d11e0c78536bf0083e34f7ea08934 | p15@SNED1 |
| 3.87e-62 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_e23d979295193059c40229cd35c51d46 | p@chr5:30104176..30104187, - |
| 3.87e-62 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_e23d979295193059c40229cd35c51d46 | p@chr5:30104176..30104187, - |
| 5.39e-52 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_3f72f356f5c2c3da0afe05e28c712595 | p1@ENST00000436845 |
| 5.39e-52 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_3f72f356f5c2c3da0afe05e28c712595 | p1@ENST00000436845 |
| 5.25e-50 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_97e2e91c4c4d2a2e7ed17b690c25e679 | p6@SIX4 |
| 5.25e-50 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_97e2e91c4c4d2a2e7ed17b690c25e679 | p6@SIX4 |
| 1.71e-49 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_85600ff58e4a0e9ea20dbfa4f075ee58 | p4@NKX3-2 |
| 1.71e-49 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_85600ff58e4a0e9ea20dbfa4f075ee58 | p4@NKX3-2 |
| 4.01e-47 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_ed3707da8b53145eb0b54710afde1b73 | p@chr5:140887761..140887777, + |
| 4.01e-47 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_ed3707da8b53145eb0b54710afde1b73 | p@chr5:140887761..140887777, + |
| 3.73e-45 | FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_01a721db5315fc8920e4430b37dde8a0 | p@chr2:242009429..242009432, + |
| 3.73e-45 | FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_01a721db5315fc8920e4430b37dde8a0 | p@chr2:242009429..242009432, + |
| 5.04e-45 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_2e3bbddf85a06c41347f0220e21e3df9 | p@chr9:114135497..114135526, - |
| 5.04e-45 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_2e3bbddf85a06c41347f0220e21e3df9 | p@chr9:114135497..114135526, - |
| 1.45e-44 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_02d92bb26704c68158e6cada8f8eecd4 | p@chr2:241897125..241897142, - |
| 1.45e-44 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_02d92bb26704c68158e6cada8f8eecd4 | p@chr2:241897125..241897142, - |
| 5.55e-44 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_c57fa1384db29ddadaca9c263f911f92 | p@chr3:80727046..80727051, - |
| 5.55e-44 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_c57fa1384db29ddadaca9c263f911f92 | p@chr3:80727046..80727051, - |
| 5.66e-42 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_9bb02e095725779f626b605d07965b4b | p@chr7:100202784..100202796, - |
| 5.66e-42 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_9bb02e095725779f626b605d07965b4b | p@chr7:100202784..100202796, - |
| 9.63e-42 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_fd8bb16820f0b5478f8010cf7baded1d | p20@CAPZB |
| 9.63e-42 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_fd8bb16820f0b5478f8010cf7baded1d | p20@CAPZB |
| 2.13e-39 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_5afa36eb2d803636590c3fc2690be943 | p@chr1:19778678..19778689, - |
| 2.13e-39 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_5afa36eb2d803636590c3fc2690be943 | p@chr1:19778678..19778689, - |
| 1.04e-37 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_b2679799224fa1e5d198958f94ad2032 | p@chr2:241897189..241897221, - |
| 1.04e-37 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_b2679799224fa1e5d198958f94ad2032 | p@chr2:241897189..241897221, - |
| 1.51e-37 | FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_49340f08a45e8f92758e29fbd3438d4f | p22@SNED1 |
| 1.51e-37 | FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_49340f08a45e8f92758e29fbd3438d4f | p22@SNED1 |
| 3.4e-36 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_8044fe1dfe595cb15b5fcb0f27cf5e9c | p1@uc010aki.1 |
| 3.4e-36 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_8044fe1dfe595cb15b5fcb0f27cf5e9c | p1@uc010aki.1 |
| 6.5e-34 | FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_9354a5f5e54792be906fc9f29f51e99f | p31@SEMA3C |
| 6.5e-34 | FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_9354a5f5e54792be906fc9f29f51e99f | p31@SEMA3C |
| 9.08e-34 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_4651b65fc544af9f6110b98b8240a1a1 | p3@uc010aki.1 |
| 9.08e-34 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_4651b65fc544af9f6110b98b8240a1a1 | p3@uc010aki.1 |
| 1.15e-32 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_cfa3b77e5e2fd3716a4cf60543d8c296 | p3@PAX1 |
| 1.15e-32 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_cfa3b77e5e2fd3716a4cf60543d8c296 | p3@PAX1 |
| 1.77e-32 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_5670a9657894d5222a23b71f2c205011 | p@chr10:81923378..81923389, - |
| 1.77e-32 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_5670a9657894d5222a23b71f2c205011 | p@chr10:81923378..81923389, - |
| 2.19e-32 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_487a9594f68e790af83c3981dfcf7a6e | p@chr2:12248310..12248334, - |
| 2.19e-32 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_487a9594f68e790af83c3981dfcf7a6e | p@chr2:12248310..12248334, - |
| 8.44e-32 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_05620b785936dd7aa6eae3fd87d6cdce | p19@HDAC9 |
| 8.44e-32 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_05620b785936dd7aa6eae3fd87d6cdce | p19@HDAC9 |
| 3.34e-31 | FFCP PHASE2:Hg19::chr20:43343610..43343645,+#_c30e28263318cbcdcde73426f6e33232 | p5@WISP2 |
| 3.34e-31 | FFCP PHASE1:Hg19::chr20:43343610..43343645,+#_c30e28263318cbcdcde73426f6e33232 | p5@WISP2 |
| 1.1e-30 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_8cbda5fc851724b56b18b879f478b58e | p@chr7:158224707..158224729, - |
| 1.1e-30 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_8cbda5fc851724b56b18b879f478b58e | p@chr7:158224707..158224729, - |
| 4.93e-30 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_3cf6b37bdfa3b4d350e2661fdcad8b05 | p@chr1:65888177..65888194, + |
| 4.93e-30 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_3cf6b37bdfa3b4d350e2661fdcad8b05 | p@chr1:65888177..65888194, + |
| 1.3e-29 | FFCP PHASE1:Hg19::chr2:241937787..241937803,+#_d76f9de46735c8f213a4875717f9f07b | p5@SNED1 |
| 1.3e-29 | FFCP PHASE2:Hg19::chr2:241937787..241937803,+#_d76f9de46735c8f213a4875717f9f07b | p5@SNED1 |
| 6.39e-29 | FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_aecc6c230c06b3bc8e7e10f600207622 | p@chr17:38613285..38613298, - |
| 6.39e-29 | FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_aecc6c230c06b3bc8e7e10f600207622 | p@chr17:38613285..38613298, - |
| 6.71e-29 | FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_8b1b4ee5bc1e59e1ef5a73918bba5bf0 | p34@LPAR1 |
| 6.71e-29 | FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_8b1b4ee5bc1e59e1ef5a73918bba5bf0 | p34@LPAR1 |
| 1.23e-28 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_f8968bfdc09edd66fd6d32c629e0fd8f | p3@NKX3-2 |
| 1.23e-28 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_f8968bfdc09edd66fd6d32c629e0fd8f | p3@NKX3-2 |
| 1.72e-28 | FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_b18d63485f2b87fc81e9fa92ece499ae | p6@WISP2 |
| 1.72e-28 | FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_b18d63485f2b87fc81e9fa92ece499ae | p6@WISP2 |
| 1.13e-27 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_0dfc85178598b47996e20fadf62bd6c0 | p1@MGC27382 |
| 1.13e-27 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_0dfc85178598b47996e20fadf62bd6c0 | p1@MGC27382 |
| 3.37e-27 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_5f527a178ead1cf307306afdfc8ffdc2 | p18@HDAC9 |
| 3.37e-27 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_5f527a178ead1cf307306afdfc8ffdc2 | p18@HDAC9 |
| 9.5e-27 | FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_f348a2a5472d8a25cf48dc2a1bd97f3e | p@chr8:25337491..25337504, + |
| 9.5e-27 | FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_f348a2a5472d8a25cf48dc2a1bd97f3e | p@chr8:25337491..25337504, + |
| 2.17e-26 | FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_d410c753723a6557959f9857e0089e39 | p@chr14:61113228..61113233, - |
| 2.17e-26 | FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_d410c753723a6557959f9857e0089e39 | p@chr14:61113228..61113233, - |
| 5.22e-26 | FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_242eb124e00e8ba8391f484dacea703c | p@chr2:181751144..181751146, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_242eb124e00e8ba8391f484dacea703c | p@chr13:24914614..24914622, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_242eb124e00e8ba8391f484dacea703c | p@chr1:172134755..172134764, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_242eb124e00e8ba8391f484dacea703c | p@chr9:33028063..33028067, - |
| 5.22e-26 | FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_242eb124e00e8ba8391f484dacea703c | p1@ENST00000517363 |
| 5.22e-26 | FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_242eb124e00e8ba8391f484dacea703c | p9@SKOR1 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_242eb124e00e8ba8391f484dacea703c | p@chr1:172134667..172134711, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_242eb124e00e8ba8391f484dacea703c | p@chr12:130786785..130786827, - |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_242eb124e00e8ba8391f484dacea703c | p@chr1:172134736..172134739, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_242eb124e00e8ba8391f484dacea703c | p@chr1:172134667..172134711, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_242eb124e00e8ba8391f484dacea703c | p@chr9:33028063..33028067, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_242eb124e00e8ba8391f484dacea703c | p@chr12:130786785..130786827, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_242eb124e00e8ba8391f484dacea703c | p@chr2:181751144..181751146, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_242eb124e00e8ba8391f484dacea703c | p@chr1:172134755..172134764, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_242eb124e00e8ba8391f484dacea703c | p@chr1:172134736..172134739, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_242eb124e00e8ba8391f484dacea703c | p@chr13:24914614..24914622, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_242eb124e00e8ba8391f484dacea703c | p1@ENST00000517363 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_242eb124e00e8ba8391f484dacea703c | p9@SKOR1 |
| 8.65e-26 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_1cf85b0a588b845f5e7da31aadf580a0 | p@chr18:22150956..22150983, + |
| 8.65e-26 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_1cf85b0a588b845f5e7da31aadf580a0 | p@chr18:22150956..22150983, + |
| 8.65e-26 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_1cf85b0a588b845f5e7da31aadf580a0 | p5@PTGFR |
| 8.65e-26 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_1cf85b0a588b845f5e7da31aadf580a0 | p5@PTGFR |
| 9.05e-26 | FFCP PHASE2:Hg19::chr6:1626414..1626429,-#_aaff97b1563c259a094f6f323931d98f | p7@GMDS |
| 9.05e-26 | FFCP PHASE1:Hg19::chr6:1626414..1626429,-#_aaff97b1563c259a094f6f323931d98f | p7@GMDS |
| 1.44e-25 | FFCP PHASE1:Hg19::chr9:113798435..113798442,-#_de197fa607f73fd722d417f7f3b8c420 | p42@LPAR1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr9:113798435..113798442,-#_de197fa607f73fd722d417f7f3b8c420 | p42@LPAR1 |
| 1.56e-25 | FFCP PHASE1:Hg19::chr5:17743903..17743914,+#_95dce78527ece60734bfc70673da4cbf | p@chr5:17743903..17743914, + |
| 1.56e-25 | FFCP PHASE2:Hg19::chr5:17743903..17743914,+#_95dce78527ece60734bfc70673da4cbf | p@chr5:17743903..17743914, + |
