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|located_in=
|located_in=
|name=presumptive neural retina
|name=presumptive neural retina
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0003072
|part_of=UBERON:0003072

Latest revision as of 17:53, 12 September 2014

Name:presumptive neural retina
Namespace:FANTOM
Definition:"Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0001304
EMAPA:16675
TAO:0001071
VHOG:0000490

ZFA:0001071
Synonyms: "inner layer optic cup" EXACT [ZFA:0001071]
"optic cup inner layer" EXACT [EHDAA2:0001304]
"presumptive retinas" EXACT PLURAL [ZFA:0001071]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure),UBERON:0010312(immature eye)
part_of:UBERON:0003072(optic cup)



Children

develops from:UBERON:0003902 (retinal neural layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005425 (presumptive neural retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr7:15056365..15056368, -
2.55e-98FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:240176859..240176904, -
2.55e-98FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:103200303..103200307, +
2.55e-98FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr17:47107522..47107524, +
2.55e-98FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:172318159..172318160, +
2.55e-98FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:85119696..85119699, +
2.55e-98FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:33229308..33229311, -
2.55e-98FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:163246025..163246029, +
2.55e-98FFCP PHASE1:Hg19::chr18:61506836..61506840,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:61506836..61506840, +
2.55e-98FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:97626726..97626741, +
2.55e-98FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr21:45724075..45724081, +
2.55e-98FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:88034381..88034386, -
2.55e-98FFCP PHASE1:Hg19::chr3:77060783..77060789,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:77060783..77060789, +
2.55e-98FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_3ed8ef55777c3b623f5fc9b1f7764abfp7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr2:21277180..21277193,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:21277180..21277193, +
2.55e-98FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:73444812..73444816, +
2.55e-98FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:68589926..68589929, +
2.55e-98FFCP PHASE2:Hg19::chr3:27750995..27750997,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:27750995..27750997, -
2.55e-98FFCP PHASE2:Hg19::chr2:29645795..29645797,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:29645795..29645797, +
2.55e-98FFCP PHASE2:Hg19::chr2:192696669..192696673,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:192696669..192696673, +
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_3ed8ef55777c3b623f5fc9b1f7764abfp59@ANK3
2.55e-98FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:203036812..203036840, +
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_3ed8ef55777c3b623f5fc9b1f7764abfp3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr13:64423563..64423566, +
2.55e-98FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:171939999..171940009, -
2.55e-98FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:79291300..79291301, +
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:20382476..20382481, -
2.55e-98FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_3ed8ef55777c3b623f5fc9b1f7764abfp10@PPAP2A
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr15:36402459..36402465, -
2.55e-98FFCP PHASE2:Hg19::chr1:169073323..169073334,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr17:12935401..12935405, -
2.55e-98FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chrX:131884370..131884375, -
2.55e-98FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:126962527..126962529, -
2.55e-98FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:68527802..68527806, +
2.55e-98FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:37679189..37679193, +
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_3ed8ef55777c3b623f5fc9b1f7764abfp18@TGFB3
2.55e-98FFCP PHASE1:Hg19::chr11:30166055..30166059,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:30166055..30166059, -
2.55e-98FFCP PHASE1:Hg19::chr14:88034381..88034386,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:88034381..88034386, -
2.55e-98FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:33229308..33229311, -
2.55e-98FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_3ed8ef55777c3b623f5fc9b1f7764abfp7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_3ed8ef55777c3b623f5fc9b1f7764abfp10@NELL1
2.55e-98FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr21:22483836..22483880, +
2.55e-98FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:66713214..66713221, +
2.55e-98FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:172318159..172318160, +
2.55e-98FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr4:139501766..139501798, -
2.55e-98FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr9:79519652..79519664, -
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_3ed8ef55777c3b623f5fc9b1f7764abfp1@ENST00000510391
2.55e-98FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_3ed8ef55777c3b623f5fc9b1f7764abfp3@ENST00000558781
2.55e-98FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:72875355..72875358, +
2.55e-98FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@SNORD111B
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:73444812..73444816, +
2.55e-98FFCP PHASE2:Hg19::chr19:20382476..20382481,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:20382476..20382481, -
2.55e-98FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:27750995..27750997, -
2.55e-98FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:39827273..39827281, +
2.55e-98FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_3ed8ef55777c3b623f5fc9b1f7764abfp3@BC098451
2.55e-98FFCP PHASE2:Hg19::chr8:130597061..130597068,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:130597061..130597068, +
2.55e-98FFCP PHASE1:Hg19::chr14:85119696..85119699,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_3ed8ef55777c3b623f5fc9b1f7764abfp10@ALK
2.55e-98FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:88535666..88535671, +
2.55e-98FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_3ed8ef55777c3b623f5fc9b1f7764abfp12@C16orf62
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr4:130221053..130221071, +
2.55e-98FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:78718132..78718157, +

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