UBERON:0006947: Difference between revisions
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|located_in= | |located_in= | ||
|name=male genital duct | |name=male genital duct | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004054 | |part_of=UBERON:0004054 | ||
Latest revision as of 17:59, 12 September 2014
| Name: | male genital duct | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: | "sperm duct" EXACT [ZFA:0001268] | ||
| Comments: | Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct | ||
| Alt_id: | UBERON:0010140 | ||
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005904(duct of male reproductive system),UBERON:0015212(lateral structure) |
|---|---|
| part_of: | UBERON:0004054(internal male genitalia) |
Children
| part of: | UBERON:0001000 (vas deferens),UBERON:0001301 (epididymis),UBERON:0006868 (seminal fluid secreting gland) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 51-27F8 (vesicular gland, adult)
- 58-23B2 (epididymis, adult)
Mouse (Mus musculus)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 1310-23B1 (epididymis and seminiferous tubule, neonate N00)
- 1387-42A2 (epididymis and seminiferous tubule, neonate N30)
- 1955-52E4
- 51-27F8 (vesicular gland, adult)
- 58-23B2 (epididymis, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006947 (male genital duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_adb36d4669ab3729bbe71f3a485c7abb | p@chr14:105935020..105935028, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_adb36d4669ab3729bbe71f3a485c7abb | p3@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_adb36d4669ab3729bbe71f3a485c7abb | p2@EDDM3A |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_adb36d4669ab3729bbe71f3a485c7abb | p2@PATE1 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125618661..125618677, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125618495..125618517, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr15:25165150..25165161, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_adb36d4669ab3729bbe71f3a485c7abb | p@chr14:105935020..105935028, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr15:25165150..25165161, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_adb36d4669ab3729bbe71f3a485c7abb | p2@EDDM3A |
| 2.79e-195 | FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_adb36d4669ab3729bbe71f3a485c7abb | p1@LCN9 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr3:140961228..140961237, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125618739..125618756, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:69950851..69950887, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125618661..125618677, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:69950851..69950887, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125617607..125617617, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_adb36d4669ab3729bbe71f3a485c7abb | p3@EDDM3A |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_adb36d4669ab3729bbe71f3a485c7abb | p2@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_adb36d4669ab3729bbe71f3a485c7abb | p1@LCN9 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr3:140961228..140961237, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125618739..125618756, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125617636..125617646, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_adb36d4669ab3729bbe71f3a485c7abb | p3@EDDM3A |
| 2.79e-195 | FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_adb36d4669ab3729bbe71f3a485c7abb | p@chrX:112044378..112044412, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125617607..125617617, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_adb36d4669ab3729bbe71f3a485c7abb | p3@PATE2 |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_adb36d4669ab3729bbe71f3a485c7abb | p2@PATE1 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_adb36d4669ab3729bbe71f3a485c7abb | p2@PATE2 |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:69951723..69951737, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:69951723..69951737, + |
| 2.79e-195 | FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125618495..125618517, + |
| 2.79e-195 | FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_adb36d4669ab3729bbe71f3a485c7abb | p@chrX:112044378..112044412, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_adb36d4669ab3729bbe71f3a485c7abb | p@chr11:125617636..125617646, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr10:119307515..119307518,+#_a8f659f2ac68083c30d3dc01096eb48f | p23@EMX2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:25702669..25702678,-#_a8f659f2ac68083c30d3dc01096eb48f | p4@ENST00000446840, p4@uc003sxp.1 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr16:2126158..2126172,+#_a8f659f2ac68083c30d3dc01096eb48f | p9@TSC2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_a8f659f2ac68083c30d3dc01096eb48f | p1@EDDM3A |
| 3.27e-147 | FFCP PHASE2:Hg19::chr10:114094924..114094935,-#_a8f659f2ac68083c30d3dc01096eb48f | p@chr10:114094924..114094935, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_a8f659f2ac68083c30d3dc01096eb48f | p1@EDDM3A |
| 3.27e-147 | FFCP PHASE1:Hg19::chr11:69951071..69951079,+#_a8f659f2ac68083c30d3dc01096eb48f | p@chr11:69951071..69951079, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr11:69951071..69951079,+#_a8f659f2ac68083c30d3dc01096eb48f | p@chr11:69951071..69951079, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr10:119307515..119307518,+#_a8f659f2ac68083c30d3dc01096eb48f | p23@EMX2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr10:114094924..114094935,-#_a8f659f2ac68083c30d3dc01096eb48f | p@chr10:114094924..114094935, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:25702669..25702678,-#_a8f659f2ac68083c30d3dc01096eb48f | p4@ENST00000446840, p4@uc003sxp.1 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr16:2126158..2126172,+#_a8f659f2ac68083c30d3dc01096eb48f | p9@TSC2 |
| 3.27e-147 | FFCP PHASE1:Hg19::chr11:92922903..92922918,+#_a8f659f2ac68083c30d3dc01096eb48f | p@chr11:92922903..92922918, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr11:92922903..92922918,+#_a8f659f2ac68083c30d3dc01096eb48f | p@chr11:92922903..92922918, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr11:125706033..125706038,+#_edbe3ef02773caa7a4679e3795099f3f | p@chr11:125706033..125706038, + |
| 5.41e-147 | FFCP PHASE1:Hg19::chr11:69950033..69950046,+#_edbe3ef02773caa7a4679e3795099f3f | p11@ANO1 |
| 5.41e-147 | FFCP PHASE2:Hg19::chr11:69950033..69950046,+#_edbe3ef02773caa7a4679e3795099f3f | p11@ANO1 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr15:64423864..64423884,+#_edbe3ef02773caa7a4679e3795099f3f | p8@SNX1 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr17:59475447..59475455,+#_edbe3ef02773caa7a4679e3795099f3f | p@chr17:59475447..59475455, + |
| 5.41e-147 | FFCP PHASE2:Hg19::chr15:64423864..64423884,+#_edbe3ef02773caa7a4679e3795099f3f | p8@SNX1 |
| 5.41e-147 | FFCP PHASE2:Hg19::chr11:125706033..125706038,+#_edbe3ef02773caa7a4679e3795099f3f | p@chr11:125706033..125706038, + |
| 5.41e-147 | FFCP PHASE2:Hg19::chr17:59475447..59475455,+#_edbe3ef02773caa7a4679e3795099f3f | p@chr17:59475447..59475455, + |
| 8.93e-147 | FFCP PHASE1:Hg19::chr10:102505147..102505162,+#_5f425a27b68e2f71bef962ac178da169 | p9@PAX2 |
| 8.93e-147 | FFCP PHASE2:Hg19::chr2:87985242..87985251,-#_5f425a27b68e2f71bef962ac178da169 | p@chr2:87985242..87985251, - |
| 8.93e-147 | FFCP PHASE1:Hg19::chr2:87985242..87985251,-#_5f425a27b68e2f71bef962ac178da169 | p@chr2:87985242..87985251, - |
| 8.93e-147 | FFCP PHASE2:Hg19::chr10:102505147..102505162,+#_5f425a27b68e2f71bef962ac178da169 | p9@PAX2 |
| 1.47e-146 | FFCP PHASE1:Hg19::chr3:107201385..107201388,-#_dac6ac1d8758c7a85c89858384e45f8d | p@chr3:107201385..107201388, - |
| 1.47e-146 | FFCP PHASE2:Hg19::chr3:107201385..107201388,-#_dac6ac1d8758c7a85c89858384e45f8d | p@chr3:107201385..107201388, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:15706318..15706336,+#_63fbf71a93de793951981a83aabd5ccd | p@chr19:15706318..15706336, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr13:103347376..103347414,-#_63fbf71a93de793951981a83aabd5ccd | p@chr13:103347376..103347414, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr6:50017636..50017649,-#_63fbf71a93de793951981a83aabd5ccd | p@chr6:50017636..50017649, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43838343..43838355,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43838343..43838355, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:26217127..26217131,+#_63fbf71a93de793951981a83aabd5ccd | p@chr1:26217127..26217131, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr15:91849918..91849931,+#_63fbf71a93de793951981a83aabd5ccd | p@chr15:91849918..91849931, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr15:25165137..25165145,+#_63fbf71a93de793951981a83aabd5ccd | p@chr15:25165137..25165145, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43850995..43851023,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43850995..43851023, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:20265757..20265766,+#_63fbf71a93de793951981a83aabd5ccd | p@chr19:20265757..20265766, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr21:47337358..47337375,+#_63fbf71a93de793951981a83aabd5ccd | p@chr21:47337358..47337375, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43851326..43851348,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43851326..43851348, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43836162..43836169,-#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43836162..43836169, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr2:80773061..80773072,+#_63fbf71a93de793951981a83aabd5ccd | p@chr2:80773061..80773072, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43853005..43853012,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43853005..43853012, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43836736..43836753,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43836736..43836753, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr11:34816713..34816719,-#_63fbf71a93de793951981a83aabd5ccd | p@chr11:34816713..34816719, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr11:1025034..1025037,-#_63fbf71a93de793951981a83aabd5ccd | p@chr11:1025034..1025037, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr19:15733036..15733039,+#_63fbf71a93de793951981a83aabd5ccd | p@chr19:15733036..15733039, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr11:69954393..69954400,-#_63fbf71a93de793951981a83aabd5ccd | p@chr11:69954393..69954400, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr6:49989700..49989711,-#_63fbf71a93de793951981a83aabd5ccd | p1@DEFB110 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43850664..43850675,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43850664..43850675, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr15:91849948..91849962,+#_63fbf71a93de793951981a83aabd5ccd | p@chr15:91849948..91849962, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr4:42942084..42942100,+#_63fbf71a93de793951981a83aabd5ccd | p@chr4:42942084..42942100, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43850941..43850991,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43850941..43850991, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:123140..123152,+#_63fbf71a93de793951981a83aabd5ccd | p3@DEFB126 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851878..43851883,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43851878..43851883, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:182369766..182369777,-#_63fbf71a93de793951981a83aabd5ccd | p1@TEDDM1 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43852958..43852972,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43852958..43852972, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr14:21059530..21059539,-#_63fbf71a93de793951981a83aabd5ccd | p@chr14:21059530..21059539, - |
| 8.98e-131 | FFCP PHASE2:Hg19::chr19:15729741..15729749,+#_63fbf71a93de793951981a83aabd5ccd | p@chr19:15729741..15729749, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr16:55909231..55909242,-#_63fbf71a93de793951981a83aabd5ccd | p2@CES5A |
| 8.98e-131 | FFCP PHASE2:Hg19::chr11:1030990..1030995,-#_63fbf71a93de793951981a83aabd5ccd | p@chr11:1030990..1030995, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr3:49699854..49699887,+#_63fbf71a93de793951981a83aabd5ccd | p@chr3:49699854..49699887, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:44207890..44207899,-#_63fbf71a93de793951981a83aabd5ccd | p2@WFDC8 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr19:15732081..15732088,+#_63fbf71a93de793951981a83aabd5ccd | p@chr19:15732081..15732088, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chrX:16913211..16913222,+#_63fbf71a93de793951981a83aabd5ccd | p@chrX:16913211..16913222, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr20:43850651..43850662,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43850651..43850662, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr20:43851492..43851518,+#_63fbf71a93de793951981a83aabd5ccd | p@chr20:43851492..43851518, + |
